View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17237_low_1 (Length: 933)

Name: NF17237_low_1
Description: NF17237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17237_low_1
NF17237_low_1
[»] chr3 (2 HSPs)
chr3 (19-933)||(45973704-45974620)
chr3 (247-310)||(10946384-10946447)
[»] chr5 (1 HSPs)
chr5 (19-96)||(9496913-9496993)
[»] chr1 (1 HSPs)
chr1 (247-310)||(29175841-29175904)


Alignment Details
Target: chr3 (Bit Score: 750; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 750; E-Value: 0
Query Start/End: Original strand, 19 - 933
Target Start/End: Original strand, 45973704 - 45974620
Alignment:
Q  19 attgtctccgtctgggttgcagacttgataagtcgctgtctttatcaaagcttgatgaatcaacccatttatgtttaaagacattcatcgtgttaaagat 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||    
T  45973704 attgtctccgtctgggttgcagacttgataagtcgctgtctttatcaaagcttgatgaatcaacccatttatgtttaa-gacattcatcgtgttgaagat 45973802  T
Q  119 ggtgagaaacacaaggagaaagggaggag---tttgagattccaaatttttacagaagaacgtgtttgagcaggcaaatattctgtgtagtgggtttaac 215  Q
    |||||||||||||||||||||||||||||   |||| ||||||||||||||||||||||||||||||         ||||||||||| ||||||||||||    
T  45973803 ggtgagaaacacaaggagaaagggaggaggagtttgggattccaaatttttacagaagaacgtgttt---------aatattctgtgcagtgggtttaac 45973893  T
Q  216 gtggaataaattagagaaggcaaatat----------tttaatcagatggttatgtttcgtttaagtgtgtgactgtgttattttattgaatgcagtgaa 305  Q
    |||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45973894 gtggaataaattagagaaggcaaatatataccgttattttaatcagatggttatgtttcgtttaagtgtgtgactgtgttattttattgaatgcagtgaa 45973993  T
Q  306 tcacaatccgaattttagttgataagaaagtactcttgtgttttctttcccaccaccaccaccattggcattgactattttgcaactctccaacccatta 405  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  45973994 tcacaatccgaattttagttgataagaaagtactcttgtgttttctttcccaccaccaccaccactggcattgactattttgcaactctccaacccatta 45974093  T
Q  406 caagttaaatcaacagtgcacaatgtcacaagttcacaaccaaccacattacatcaccatcacattcacgttttctctgtgtttttcagttaccagtacc 505  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45974094 caagttaaatcaacagtgcacaatgtcacaagttcacaaccaaccacattacatcaccatcacattcacgttttctctgtgtttttcagttaccagtacc 45974193  T
Q  506 tccattattattagcactatagcatatcacatttcctctttatcggaaaaccatatcccgctttaaacatcgcaactacgcgattatacttatcaatctg 605  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45974194 tccattattattagcactatagcatatcacatttcctctttatcggaaaaccatatcccgctttaaacatcgcaactacgcgattatacttatcaatctg 45974293  T
Q  606 tcttctaagtttcttaagagtaaaatacaattcagcttccaactatatattatgcataataattagttcaagtgctgttatttgattgttgcaataagag 705  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  45974294 tcttctaagtttcttaagagtaaaatacaattcagcttccaactatatattatgcataataattagttgaagtgctgttatttgattgttgcaataagag 45974393  T
Q  706 atttgcatgcgttgagnnnnnnnnnnnnnnnnnnncagcgaagaggacggtgtcggtaacggccaagtttccgtttgtttcttggtttgctacgtggcag 805  Q
    ||||||||||||||||                   || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  45974394 atttgcatgcgttgaggaaagaagaagaagaacagcaacgaagaggacggtgtcggtaacggccaagtttccgtttgtttcttggtttgctacgtggc-g 45974492  T
Q  806 caagaggctcgtgagtgaaaatgccacatagagcaacttactttttcccgcgtcaatttccggagcgaggattggatgaatcatccaaaaagctattaga 905  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45974493 caagaggctcgtgagtgaaaatgccacatagagcaacttactttttcccgcgtcaatttccggagcgaggattggatgaatcatccaaaaagctattaga 45974592  T
Q  906 tcaagataaggacaaaatcgtcaactcc 933  Q
    ||||||||||||||||||||||||||||    
T  45974593 tcaagataaggacaaaatcgtcaactcc 45974620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 247 - 310
Target Start/End: Complemental strand, 10946447 - 10946384
Alignment:
Q  247 atcagatggttatgtttcgtttaagtgtgtgactgtgttattttattgaatgcagtgaatcaca 310  Q
    ||||||||||| ||| | |||||| |||||||||| || |||||| ||| ||||||||||||||    
T  10946447 atcagatggttttgtattgtttaactgtgtgactgcgtcattttaatgactgcagtgaatcaca 10946384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 96
Target Start/End: Original strand, 9496913 - 9496993
Alignment:
Q  19 attgtctccgtctgggttgcagacttgataagtcgct-gtctttatcaaagcttgatgaatcaacc--catttatgtttaa 96  Q
    ||||||||||||| ||||||||||||||| ||| |||  ||||| |||||||||||||||||||||  |||||||||||||    
T  9496913 attgtctccgtcttggttgcagacttgatgagttgctaatctttttcaaagcttgatgaatcaacccgcatttatgtttaa 9496993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 247 - 310
Target Start/End: Complemental strand, 29175904 - 29175841
Alignment:
Q  247 atcagatggttatgtttcgtttaagtgtgtgactgtgttattttattgaatgcagtgaatcaca 310  Q
    ||||||||||||||||| |||| | ||||||||||||| |||||| ||| |||||||| |||||    
T  29175904 atcagatggttatgttttgtttgaatgtgtgactgtgtcattttactgactgcagtgagtcaca 29175841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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