View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17237_low_2 (Length: 569)
Name: NF17237_low_2
Description: NF17237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17237_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 479; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 11 - 553
Target Start/End: Original strand, 29142403 - 29142945
Alignment:
| Q |
11 |
cacagaaaattgaaggtaaatttattgtcaatacaaaaggaaacattttcactgaggcagtagaaggtgtgttgatcacttcatggcttttggaggcact |
110 |
Q |
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| T |
29142403 |
cacagaaaattgaaggtaactttattgtcaatacaaaaggaaacattttcactgaggcagtagaaggtgtgttgatcacttcatggcttttggaggcact |
29142502 |
T |
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| Q |
111 |
ctaacagctgaaacaaataatgtaatcacaagtttcatcagttttctttttcaaaatatttcttattcattactaactatgaaacatatataagaaacgt |
210 |
Q |
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| T |
29142503 |
ctaacagctgaaacaaataatgtaatcacaagtttcatcagttttctttttcaaaatatttcttattcattactaactatgaaacatataaaagaaacgt |
29142602 |
T |
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| Q |
211 |
gtgtgcgcgcgcgcgtaaatgaatagatagaagatcttataatgtaaccnnnnnnnn--gatggaagatcttacatccacattgcattcctgctggaact |
308 |
Q |
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| T |
29142603 |
gtgtgtgcgcgcg--taaatgaagagatagaagatcttataatgtaaccaaaaaaaaaagatggaagatcttacatccacattgcattcctgctggaact |
29142700 |
T |
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| Q |
309 |
ttcaatccacaagaccttgcaacagatattgctttttgaacactcacaaacttttccatttctttagtgatgagattacaagcacatgggacatcaaagt |
408 |
Q |
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| T |
29142701 |
ttcaatccgcaagaccttgcaacagatattgctttttgaacactcacaaacttttccatttctttagtgatgagattacaagcacatgggacatcaaagt |
29142800 |
T |
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| Q |
409 |
ttctcatcactgcacaacaccctggtgatggtggaatgtttggtcctgatttctcaacaaactttgaacattgtgatataagatctggaagacttcctcc |
508 |
Q |
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| T |
29142801 |
ttctcatcactgcacaacaccctggtgatggtggaatgtttggtcctgatttctcaacaaactttgaacattgtgatataagatctggaagacttcctcc |
29142900 |
T |
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| Q |
509 |
acattgacctgaaacttgatttgtgttgtataataatgttccaaa |
553 |
Q |
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| T |
29142901 |
acattgacctgaaacttgatttgtgttgtataataatgttccaaa |
29142945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 276 - 553
Target Start/End: Complemental strand, 29569350 - 29569073
Alignment:
| Q |
276 |
atcttacatccacattgcattcctgctggaactttcaatccacaagaccttgcaacagatattgctttttgaacactcacaaacttttccatttctttag |
375 |
Q |
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| T |
29569350 |
atcttacatccacattgcattcctgctggaagcttcactccacaagaccttgcaacagatattgcctttggaacactcacaaacttttcagcttctttag |
29569251 |
T |
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| Q |
376 |
tgatgagattacaagcacatgggacatcaaagtttctcatcactgcacaacaccctggtgatggtggaatgtttggtcctgatttctcaacaaactttga |
475 |
Q |
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| T |
29569250 |
tgatgagtttgcaagcacatgggacatcaaagcttctaatggctgcacaacaccctggtgatggtgcaatctttggtcctgatttctgaacaaactttga |
29569151 |
T |
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| Q |
476 |
acattgtgatataagatctggaagacttcctccacattgacctgaaacttgatttgtgttgtataataatgttccaaa |
553 |
Q |
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| T |
29569150 |
acattctgatataagtgctggaaggcttcctccacattgacctgaaacttgatttgtgttgtataataatgttccaaa |
29569073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 81 - 171
Target Start/End: Complemental strand, 29569486 - 29569394
Alignment:
| Q |
81 |
gttgatcacttcat--ggcttttggaggcactctaacagctgaaacaaataatgtaatcacaagtttcatcagttttctttttcaaaatattt |
171 |
Q |
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| T |
29569486 |
gttgatcacttcatatggctttcggtgggattctaatagctgaaacaaacaatgtcatcacaagttttgtcagttttctttctcaaaatattt |
29569394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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