View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17238_high_2 (Length: 545)
Name: NF17238_high_2
Description: NF17238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17238_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 253; Significance: 1e-140; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 236 - 529
Target Start/End: Original strand, 33536244 - 33536537
Alignment:
| Q |
236 |
ggaggtatattaattgttgtcacgttcatttttcttgtattatatcatatttttccaattattttgatgatcataactttatgagatgatatgatgatta |
335 |
Q |
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| T |
33536244 |
ggaggtatattaattgt---cacgttcatttttcttgtattatatcatatttttccaattattttgatgatcataactttatgagatgaaatgatgatta |
33536340 |
T |
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| Q |
336 |
gtttagttggtaaataggtaatgtgattgataa---tgccgttcatttgttagcaacgtcgtcattgtcgtacgctagcttccaaatttatgatcatatg |
432 |
Q |
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| T |
33536341 |
gtttagttggtaaataggtaatgtgattgataataatgccgttcatttgttagcaacgttgtcattgtcgtatgctagcttccaaatttatgatcatatg |
33536440 |
T |
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| Q |
433 |
tcatcttgtattatgaccgaagatctattgtatgattgatattattattttttcgactttcagaaaattgtagttgatttcattgaagattgaaagt |
529 |
Q |
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| T |
33536441 |
tcatcttatattatgaccgaagatctattgtatgattgatattattattttttcgactttcagaaaattgtagttgatttcattgaagattgaaagt |
33536537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 95 - 172
Target Start/End: Original strand, 33536060 - 33536137
Alignment:
| Q |
95 |
aagattcaattctctttccaaacctttccagccaagaactgtcctatactttnnnnnnnatgttgtcatcaacattca |
172 |
Q |
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| T |
33536060 |
aagattcaattctctttccaaacctttccagccaagaactgtcctatacttttcctcccatgttgtcatcaacattca |
33536137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 412 - 444
Target Start/End: Complemental strand, 38078237 - 38078205
Alignment:
| Q |
412 |
ttccaaatttatgatcatatgtcatcttgtatt |
444 |
Q |
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| T |
38078237 |
ttccaaattcatgatcatatgtcatcttgtatt |
38078205 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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