View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17238_low_3 (Length: 420)
Name: NF17238_low_3
Description: NF17238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17238_low_3 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 411; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 10 - 420
Target Start/End: Original strand, 5695538 - 5695948
Alignment:
| Q |
10 |
catcatcacttagaattgaggactgcctagtatttgcatacatcatattggctgttctcttgtctattgtggcctatgactatcaggtgcagttgttatt |
109 |
Q |
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| T |
5695538 |
catcatcacttagaattgaggactgcctagtatttgcatacatcatattggctgttctcttgtctattgtggcctatgactatcaggtgcagttgttatt |
5695637 |
T |
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| Q |
110 |
gtctttaaaaagtctcaaatatacttttggtcagattttcaatcttgaagtctacatttgactcatcaatttttcatgtgcaggaaattggagttcttgt |
209 |
Q |
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| T |
5695638 |
gtctttaaaaagtctcaaatatacttttggtcagattttcaatcttgaagtctacatttgactcatcaatttttcatgtgcaggaaattggagttcttgt |
5695737 |
T |
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| Q |
210 |
gacactttttagcttgtttcatgcttgtgttggcttcgttttaccatcacttgctagattgaggaccatgtaatctcattacaaagagttgtacttcttt |
309 |
Q |
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| T |
5695738 |
gacactttttagcttgtttcatgcttgtgttggcttcgttttaccatcacttgctagattgaggaccatgtaatctcattacaaagagttgtacttcttt |
5695837 |
T |
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| Q |
310 |
gtttgctcaataatggatttatatttttaatttccttgtttgcaggtatgtacctaatgaattgcgtggagggatgatggggctctctcttgcccctgca |
409 |
Q |
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| T |
5695838 |
gtttgctcaataatggatttatatttttaatttccttgtttgcaggtatgtacctaatgaattgcgtggagggatgatggggctctctcttgcccctgca |
5695937 |
T |
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| Q |
410 |
aatgctgcaat |
420 |
Q |
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| T |
5695938 |
aatgctgcaat |
5695948 |
T |
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