View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17238_low_4 (Length: 311)
Name: NF17238_low_4
Description: NF17238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17238_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 41 - 299
Target Start/End: Original strand, 23144432 - 23144690
Alignment:
| Q |
41 |
gaaatcacatttatggcctatgaaacagaaatcaatttaaagagtatttgaaatgctgctaatttagattttatacctattgtgtatttttgcctgagga |
140 |
Q |
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| T |
23144432 |
gaaatcacatttatggcctatgaaacagaaatcaatttaaagagtatttgaaatgctgctaatttagattttatacctattgtgtatttttgcctgagga |
23144531 |
T |
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| Q |
141 |
ttattaaaaattactcattataatttgatacacatgttccataacnnnnnnnncatacattgagaagcaagattgcaacattcaacagagtacgcattga |
240 |
Q |
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| T |
23144532 |
ttattaaaaattactcattataatttgatacacatgttccataacttttttttcatacattgagaagcaagattgcaacattcaacagagtacgcattga |
23144631 |
T |
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| Q |
241 |
aatggtttggnnnnnnngcggggaatcaaattatgcaagagatgctctgaccacaggtt |
299 |
Q |
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| T |
23144632 |
aatggtttggaaaaaaagcggggaatcaaattatgcaagagatgctctgaccactggtt |
23144690 |
T |
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