View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17239_high_1 (Length: 1096)

Name: NF17239_high_1
Description: NF17239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17239_high_1
NF17239_high_1
[»] chr5 (7 HSPs)
chr5 (10-1080)||(43018859-43019924)
chr5 (95-482)||(35058098-35058482)
chr5 (303-395)||(42807576-42807670)
chr5 (241-285)||(42807682-42807726)
chr5 (145-184)||(42807763-42807802)
chr5 (92-129)||(42807839-42807876)
chr5 (31-60)||(35058499-35058528)
[»] chr7 (2 HSPs)
chr7 (905-1075)||(30599806-30599978)
chr7 (962-1075)||(6035211-6035325)
[»] chr1 (1 HSPs)
chr1 (1016-1076)||(12759905-12759965)
[»] chr4 (1 HSPs)
chr4 (886-1075)||(13956593-13956784)
[»] chr6 (1 HSPs)
chr6 (819-857)||(13005720-13005758)


Alignment Details
Target: chr5 (Bit Score: 877; Significance: 0; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 877; E-Value: 0
Query Start/End: Original strand, 10 - 1080
Target Start/End: Complemental strand, 43019924 - 43018859
Alignment:
Q  10 catcatcaacaccaccgtcaacgacctatgcaagaagagccaccacgttcatgcaaactcgaatgcaaacgaccacgttcttccgcaacatcaaacggtt 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43019924 catcatcaacaccaccgtcaacgacctatgcaagaagagccaccacgttcatgcaaactcgaatgcaaacgaccacgttcttccgcaacatcaaacggtt 43019825  T
Q  110 attacgaagtgagaaaaaatgaagacagcaatgacgatgatcgacatttcaaaaggagacggccgaggtatgagttggtggcagcataggcgaagaacaa 209  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43019824 attacgaagtgagaaaaaatgaagacaacaatgacgatgatcgacatttcaaaaggagacggccgaggtatgagttggtggcagcataggcgaagaacaa 43019725  T
Q  210 caactgtaccgttggaaggatttttagggaaatttgatttgatggcatatttcaattattttgccactgtaatttgnnnnnnnnnnnnnnaagtacaatc 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||              ||||||||||    
T  43019724 caactgtaccgttggaaggatttttagggaaatttgatttgatggcatatttcaattattttgccactgtaatttgtttttcttttttttaagtacaatc 43019625  T
Q  310 gacattgtaattttacgtttcttcaattcaatgaaagtttacttttttaaattcaaattcgtctcttcctttttctatttctgtccttcactccttcata 409  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43019624 gacattgtaattttacgtttcttcaattcaatgaaagtttacttttttaaattcaaattcgtctcttcctttttctatttctgtccttcactccttcata 43019525  T
Q  410 ttttatgatttaaattttacaagaatatgtaaattatatgcataattgaatcaacctatctaaaatttgaagagaaatttttaaaaataaaacttctaag 509  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43019524 ttttatgatttaaattttacaagaatatgtaaattatatgcataattgaatcaacctatctaaaatttgaagagaaatttttaaaaataaaacttctaag 43019425  T
Q  510 tctagcttaaattagtagtttagagttcagactcggtacaaaacnnnnnnnnnnnnnnnnnnnagataatagttttaaaatggtgaattctatatatggt 609  Q
    ||||||||||||||||||||||||||||||||||||||||||||                   |||||||||||||||||||||||||||||||||||||    
T  43019424 tctagcttaaattagtagtttagagttcagactcggtacaaaac-ttatttttttatttttttagataatagttttaaaatggtgaattctatatatggt 43019326  T
Q  610 gaggtatttaataagtcctttgtcggtgaaccacgtaaacaacgattaaaatcctttagattaatttatcatatcatttatttgagatcattatttagca 709  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43019325 gaggtatttaataagtcctttgtcggtgaaccacgtaaacaacgattaaaatcctttagattaatttatcatatcatttatttgagatcattatttagca 43019226  T
Q  710 caatcataccagaggtagagtattaggctagtgaatannnnnnnnctggtggaaactaataaatatgctgtgttggaatattcaagnnnnnnnnnnnnat 809  Q
    |||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||            ||    
T  43019225 caatcataccagaggtagagtattaggctagtgaata-tatttttctggtggaaactaataaatatgctgtgttggaatattcaag---tttttttttat 43019130  T
Q  810 aatatacatgatacaaaacctgacataaaaaaggacatctaacaaaaaggagataaattgactttacaagctcattacaaaaaataccatcagagtcaac 909  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43019129 aatatacatgatacaaaatctgacataaaaaaggacatctaacaaaaaggagataaattgactttacaagctcattacaaaaaataccatcagagtcaac 43019030  T
Q  910 tataacactcctaaaaagagattatgtcgagtcaaaatcctttcgtgaagctgttgtcaagagaatacattcaccttaagatgagaccaaaactcacacc 1009  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||    
T  43019029 tataacactcctaaaaagagattatgtcgagtcaaaatcctttcgtgaagctgttgtcaagagaatacattcaccttgagatgagatcaaaactcacacc 43018930  T
Q  1010 ctttacaagaagttgcataatttcttctgacctcacttccaccatactaactctcatatgaaggaaagtat 1080  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  43018929 ctttacaagaagttgcataatttcttctgacctctcttccaccatactaactctcatatgaaggaaagtat 43018859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 95 - 482
Target Start/End: Complemental strand, 35058482 - 35058098
Alignment:
Q  95 caacatcaaacggttattacgaagtgagaaaaaatgaagacagcaatgacgatgatcgacatttcaaaaggagacggccgaggtatgagttggtggcagc 194  Q
    ||||||||||| |||||||||||||||||||||| ||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  35058482 caacatcaaactgttattacgaagtgagaaaaaacgaagacaga---gacgatgatcgacatttcaaaaggagacggccgaggtatgagttggtggaagc 35058386  T
Q  195 ataggcgaaga---acaacaactgtaccgttggaaggatttttagggaaatttgatttgatggcatatttcaattattttgccactgtaatttgnnnnnn 291  Q
    ||||| |||||   ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||          
T  35058385 ataggtgaagagcaacaacaactttaccgttggaaggatttttagggaaattttatttgatggcatatttcaattattttgccaatgtaatttgtttttt 35058286  T
Q  292 nnnnnnnnaagtacaatcgacattgtaattttacgtttcttcaattcaatgaaa-gtttacttttttaaattcaaattcgtctcttcctttttctatttc 390  Q
             ||| |||||||||||||||||||| |||||||||||||||||||| ||| |||||||| ||||||||||||||||||||||||||||||||    
T  35058285 tttgg----agttcaatcgacattgtaattttatgtttcttcaattcaatgaaaagttaactttttttaattcaaattcgtctcttcctttttctatttc 35058190  T
Q  391 tgtccttcactccttcatattttatgatttaaattttacaagaatatgtaaattatatgcataattgaatcaacctatctaaaatttgaaga 482  Q
    ||||| ||| ||||||||| ||||||||||||||||||||||||||| |||||||||||||| ||| |||||||||||||||||||||||||    
T  35058189 tgtccatcagtccttcataatttatgatttaaattttacaagaatatataaattatatgcattattcaatcaacctatctaaaatttgaaga 35058098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 58; E-Value: 8e-24
Query Start/End: Original strand, 303 - 395
Target Start/End: Complemental strand, 42807670 - 42807576
Alignment:
Q  303 tacaatcgacattgtaattttacgtttcttcaattcaatgaaagtttacttttttaaattcaaattcgtctc---ttcctttttctatttctgtcc 395  Q
    |||||||||||||||||||||| |||| ||||||||||||||||| ||||||||| ||||||||||||||||   |||||||||||| ||||||||    
T  42807670 tacaatcgacattgtaattttatgtttgttcaattcaatgaaagtctactttttt-aattcaaattcgtctcctattcctttttctacttctgtcc 42807576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 241 - 285
Target Start/End: Complemental strand, 42807726 - 42807682
Alignment:
Q  241 atttgatttgatggcatatttcaattattttgccactgtaatttg 285  Q
    |||||||||||||||||| |||||||||||||||| |||||||||    
T  42807726 atttgatttgatggcataattcaattattttgccaatgtaatttg 42807682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 145 - 184
Target Start/End: Complemental strand, 42807802 - 42807763
Alignment:
Q  145 gatgatcgacatttcaaaaggagacggccgaggtatgagt 184  Q
    ||||||||||||||||||||||||||| ||||||||||||    
T  42807802 gatgatcgacatttcaaaaggagacggtcgaggtatgagt 42807763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 92 - 129
Target Start/End: Complemental strand, 42807876 - 42807839
Alignment:
Q  92 ccgcaacatcaaacggttattacgaagtgagaaaaaat 129  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  42807876 ccgcaacatcaaacggttattacgaagtgagaagaaat 42807839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 60
Target Start/End: Complemental strand, 35058528 - 35058499
Alignment:
Q  31 cgacctatgcaagaagagccaccacgttca 60  Q
    ||||||||||||||||||||||||||||||    
T  35058528 cgacctatgcaagaagagccaccacgttca 35058499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 905 - 1075
Target Start/End: Original strand, 30599806 - 30599978
Alignment:
Q  905 tcaactataacactccta-aaaagagattatgtcgagtcaaaatcctttcgtgaagctgttgtcaagagaatacattcaccttaagatgagaccaaaa-- 1001  Q
    ||||||||||| |||||  ||||||||||||| ||||||| |||| | |  |||||| |||| || ||||| ||||||||||| ||||||||  || |      
T  30599806 tcaactataactctccttcaaaagagattatgccgagtcacaatcatattctgaagcagttgacatgagaaaacattcaccttgagatgagatgaagatt 30599905  T
Q  1002 ctcacaccctttacaagaagttgcataatttcttctgacctcacttccaccatactaactctcatatgaaggaa 1075  Q
    ||||||||| || ||| |||||||| ||||| || ||||||    ||||||| |||||||||||| ||||||||    
T  30599906 ctcacaccc-ttgcaataagttgcacaattttttatgaccttttgtccaccacactaactctcatgtgaaggaa 30599978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 962 - 1075
Target Start/End: Complemental strand, 6035325 - 6035211
Alignment:
Q  962 gttgtcaagagaatacattcaccttaagatgagaccaaaactcacac-cctttacaagaagttgcataatttcttctgacctcacttccaccatactaac 1060  Q
    |||| |||||||| || |||||||| ||| |||||||| |||| ||  |||||  |||||| ||||||||||| ||||||||||  ||||||  |||| |    
T  6035325 gttgccaagagaaaactttcaccttgagaagagaccaagactcccaaacctttgaaagaagctgcataatttcatctgacctcatatccacctcactagc 6035226  T
Q  1061 tctcatatgaaggaa 1075  Q
    |||| ||| ||||||    
T  6035225 tctcttataaaggaa 6035211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 1016 - 1076
Target Start/End: Complemental strand, 12759965 - 12759905
Alignment:
Q  1016 aagaagttgcataatttcttctgacctcacttccaccatactaactctcatatgaaggaaa 1076  Q
    ||||||| ||| |||||||||||||||| | ||||||| |||| ||||||||| |||||||    
T  12759965 aagaagtcgcacaatttcttctgacctctcatccaccacactagctctcatattaaggaaa 12759905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 886 - 1075
Target Start/End: Complemental strand, 13956784 - 13956593
Alignment:
Q  886 acaaaaaataccatcagagtcaactataacactccta-aaaagagattatgtcgagtcaaaatcctttcgtgaagctgttgtcaagagaatacattcacc 984  Q
    |||| |||||||| |||  ||||||||||  |||||  |||||||||| || ||||||  |||| | || |||| | | || |||||||| |||||||||    
T  13956784 acaagaaataccaccaggatcaactataattctccttgaaaagagattctggcgagtcggaatcgtatcctgaatcagctggcaagagaaaacattcacc 13956685  T
Q  985 ttaagatgagaccaaaactcacaccct-ttacaagaagttgcataatttcttctgacctcacttccaccatactaactctcatatgaaggaa 1075  Q
    ||  || |||||||  |||| ||| || || ||||||| |||| || |||||||||| |||| ||| ||| |||| |||| |||||||||||    
T  13956684 ttgcgaggagaccacgactctcacactcttgcaagaagctgcacaaattcttctgacttcacatcccccacactagctcttatatgaaggaa 13956593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 819 - 857
Target Start/End: Complemental strand, 13005758 - 13005720
Alignment:
Q  819 gatacaaaacctgacataaaaaaggacatctaacaaaaa 857  Q
    ||||| ||||||||| |||||||||||||||||||||||    
T  13005758 gataccaaacctgacttaaaaaaggacatctaacaaaaa 13005720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University