View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17239_high_10 (Length: 493)
Name: NF17239_high_10
Description: NF17239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17239_high_10 |
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Alignment Details
Target: chr7 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 1 - 477
Target Start/End: Complemental strand, 9764843 - 9764370
Alignment:
| Q |
1 |
cttctgaagcttagatggcctttggtacatcaacctctatcttaccaaaccaaagttcatcatccaatatagatgtactttctcagaatttgggtggtga |
100 |
Q |
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||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9764843 |
cttctgaagcttagatggcctttggtatatcaacctatatcttaccaaaccaaagttcatcatccaatatagatgtactttctcagaatttgggtggtga |
9764744 |
T |
|
| Q |
101 |
actatctaaacaaataccaacccaaactacacaaatagcccctgaaacaataactgaaccaattgtttcagaaactcaacatcaaccctcactcccacag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9764743 |
actatctaaacaaataccaacccaaactacacaaatagcccctgaaacaataactgaaccaattgtttcagaaactcaacatcaaccctcactcccacag |
9764644 |
T |
|
| Q |
201 |
aaagccactgatacaacaactgcacaagttgtataagaaccgnnnnnnnnnnnnnnnnnnnncacaatagaatctgaaccaccctccattacatccactc |
300 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
9764643 |
aaagccactgatacaacaactgcacaagttgtatcagaaccg---caaacaacaacaacaaccacaatagaatctgaaccaccctccattacatccactc |
9764547 |
T |
|
| Q |
301 |
acatagtgtttgatacatcataagtatcaaaagacaaacccatcatagccatacccctacactttgccaaattagaaacgaaccaaacagattctgatgt |
400 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9764546 |
acacagtgtttgatacatcataagtatcaaaagacaaacccatcatagccatacccctacactttgccaaattagaaacgaaccaaacagattctgatgt |
9764447 |
T |
|
| Q |
401 |
tctcatgcttgaggcatcataagatgttatctaacctggaacacaacttctcaccaccactcaaacaaccttgacct |
477 |
Q |
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| T |
9764446 |
tctcatgcttgaggcatcataagatgttatttaacctggaacacaacttctcaccaccactcaaacaaccttgacct |
9764370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 311 - 465
Target Start/End: Original strand, 24493421 - 24493575
Alignment:
| Q |
311 |
tgatacatcataagtatcaaaagacaaacccatcatagccatacccctacactttgccaaattagaaacgaaccaaacagattctgatgttctcatgctt |
410 |
Q |
| |
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||||||||||| ||||||| |||||||||| ||||||||||| || |||| ||||| ||| ||||| |||||||| || |||||||||||||||||| |
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| T |
24493421 |
tgatacatcatcagtatcagaagacaaaccaatcatagccatgaccttacaatttgcaaaacctgaaaccaaccaaactgactctgatgttctcatgctt |
24493520 |
T |
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| Q |
411 |
gaggcatcataagatgttatctaacctggaacacaacttctcaccaccactcaaa |
465 |
Q |
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| T |
24493521 |
gaggcgtcagaagatgttatccaacctgaaactcaacctcttacctccactcaaa |
24493575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 69 - 153
Target Start/End: Original strand, 19641538 - 19641622
Alignment:
| Q |
69 |
atagatgtactttctcagaatttgggtggtgaactatctaaacaaataccaacccaaactacacaaatagcccctgaaacaataa |
153 |
Q |
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|||||||| ||||| || || ||||||| |||||| ||||||||||||||||||||||||| |||| ||| |||||||||||| |
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| T |
19641538 |
atagatgttctttcacaacatctgggtggagaactacctaaacaaataccaacccaaactactcaaacagcttctgaaacaataa |
19641622 |
T |
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