View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17239_high_12 (Length: 482)
Name: NF17239_high_12
Description: NF17239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17239_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 1 - 468
Target Start/End: Complemental strand, 14871387 - 14870923
Alignment:
| Q |
1 |
tttttgcatagaacgatcaagttaaataacaagactaattatatttttattttgataattaattcattgaaataagctcccaacaacgattttgctttga |
100 |
Q |
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| T |
14871387 |
tttttgcacagaacgatcaagttaaataacaagactaattatatttttattttgataattaattcattgaaataagctcccaacaacgattttgctttga |
14871288 |
T |
|
| Q |
101 |
tttggcattgaacgcatccacatgagaaatccatccaccttcttcattccgattattcatggaagcagctgcagaaagatccaatccaaccatgcgctgc |
200 |
Q |
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| T |
14871287 |
tttggcattgaacacatccacatgagaaatccatccaccttcttcattccgatt---catggaagcagctgcagaaagatccaatccaaccatgcgctgc |
14871191 |
T |
|
| Q |
201 |
ggttgtaggcgaggtgccaagatggattgctgctaaaggcactgcatgagtttatatcatggccgaatcttgtggagaagctctctcttggtataatagg |
300 |
Q |
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| T |
14871190 |
ggttgtaggcgaggtgccaagatggattgctgctaaaggcactgcaggagtttatatcatggccgaatcttgtggagaagctctctcttggtataatagt |
14871091 |
T |
|
| Q |
301 |
ttgtggtaaaagtaaaaggtagcgaaaatctttactttcatgattttaacataatacaactgtattcagtccaacacaagnnnnnnnggctcaagaaccg |
400 |
Q |
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| T |
14871090 |
ttgtggtaaaagtaaaaggtagcgaaaatctttactttcatgattctaacataatacaaccgtattcagtccaacacaagtttttttggctcaagaaccg |
14870991 |
T |
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| Q |
401 |
gctaaatctcaccgtctactagcgggtgtcttaattgaagtcacaacaaaatggactagccgaacata |
468 |
Q |
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| T |
14870990 |
gctaaatctcaccgtctactagcgggtgtctcaattgaagtcacaacaatatggactagccgaacata |
14870923 |
T |
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