View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17239_high_16 (Length: 387)
Name: NF17239_high_16
Description: NF17239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17239_high_16 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 10 - 387
Target Start/End: Complemental strand, 47494926 - 47494553
Alignment:
| Q |
10 |
atgaaaaagaaacgtgcttggaagttgaagagatagatgaagaatggtcaatgaatcaatcacttcaagaatttggtgtatctgaggaggagcatgttgg |
109 |
Q |
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| T |
47494926 |
atgaaaaagaaacgtgcttggaagttgaagagagagatgaagaatggtcaatgaatcaatcacatcaagaatttggtgtatctgaggaggagcatgttgg |
47494827 |
T |
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| Q |
110 |
attattgcttcaaagagagattgcttttggattcaaaaaagatgaaaatgttgtgcttgaagactccttcaaacgtgctcgtttgaatgcaatcaattgg |
209 |
Q |
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| T |
47494826 |
attattgcttcaaagagagattgcttttggattcaaaaaagatgaaaatgttgtgcttgaagactccttcaaacgtgctcgtttgaatgcaatcaattgg |
47494727 |
T |
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| Q |
210 |
attctcaaagttagttcatccactatttttctcttttattatatgttattattctaattcagcttcattaatgaaattacaattggagaagnnnnnnnnn |
309 |
Q |
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| T |
47494726 |
attctcaaagttagttcatccactatttttctcttttattatatgttattattctaattcagcttcattaatgaaattacaattggagaa----aaaaaa |
47494631 |
T |
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| Q |
310 |
ntcttgatttggcttcaattttttcctgattttgtgttgataattatctcagagcagagaagcattggattttcactt |
387 |
Q |
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| T |
47494630 |
atcttgatttggcttcaattttttcctgattttggattgataattatctcagaaaagagaagcattggattttcactt |
47494553 |
T |
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