View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17239_high_18 (Length: 376)
Name: NF17239_high_18
Description: NF17239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17239_high_18 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 357
Target Start/End: Original strand, 55694701 - 55695057
Alignment:
| Q |
1 |
aatggattataaacaacaaattagtgtagatctctttccctgtgtttatttttcataatccaaaaaagatcaataatcaatttgctcttnnnnnnnttaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |
|
|
| T |
55694701 |
aatggattataaacaacaaattagtgtagatctctttccctgtgtttatttttcataatccaaaaaagatcaataatcaatttgctcttgaaaaaat-aa |
55694799 |
T |
|
| Q |
101 |
ttgattctactacattgtattattgttatttaaagcagaacttcaatcaaaaatatctatcaagttatttgaagataagacatatgaattatgaagtatg |
200 |
Q |
| |
|
||||||||||||||||||||| || ||| | |||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
55694800 |
ttgattctactacattgtatttttattactagaagcagcacttcaatcaaaaatatctatcaagttatttgaatataagacatatgaattatgaagtatg |
55694899 |
T |
|
| Q |
201 |
atttgatcatgttccctatgagttacttggtcatataaacataacaaaacatgttgagcattggtggttaatgaaaat-ggattctgcaggttgaaacac |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||| ||||||| ||| |||| ||||||||||||||| |
|
|
| T |
55694900 |
ttttgatcatgttccctatgagttacttggtcatataaacataacaaaatatgtttagcattagtgtttaatgataatgggatattgcaggttgaaacac |
55694999 |
T |
|
| Q |
300 |
agcaagtagcaacaaccgtgacagaaaatgaaacagttgagttaaccaaggtcgagga |
357 |
Q |
| |
|
|||||| | ||||||| ||||||||||| |||||||||||| |||||||||||||||| |
|
|
| T |
55695000 |
agcaagcaccaacaactgtgacagaaaaggaaacagttgaggtaaccaaggtcgagga |
55695057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University