View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17239_high_3 (Length: 752)
Name: NF17239_high_3
Description: NF17239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17239_high_3 |
 |  |
|
Alignment Details
Target: chr4 (Bit Score: 668; Significance: 0; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 668; E-Value: 0
Query Start/End: Original strand, 15 - 737
Target Start/End: Original strand, 33997853 - 33998577
Alignment:
| Q |
15 |
gcaaaggggctaaatcttagggggcaaaattttcannnnnnn-attagggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttag |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33997853 |
gcaaaggggctaaatcttagggggcaaaattttcattttttttattagggggtcaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttag |
33997952 |
T |
 |
| Q |
114 |
ccaagataatttgcgaaagttttgggcaatgacagaaagagctataaagtgattatcaagcattctcttgagaaagagtgctgtgaataatgcaggttct |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33997953 |
ccaagataatttgcgaaagttttgggcaatgacagaaagagctataaagtgattatcaagcattctcttgagaaagagtgctgtgaataatgcaggttct |
33998052 |
T |
 |
| Q |
214 |
gatttctgaaggcaacaacatatcatcacccttatgaacttgaaatcttttgtgttgaaggaacatagttatgggatccgtatggtataagtatggagct |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
33998053 |
gatttctgaaggcaacaacatatcatcacccttatgaacttgaaatcttttgtgttgaaggaacatagttatgggatccgtatggtataagtgtggagct |
33998152 |
T |
 |
| Q |
314 |
tggaaagagagacattggtccctacaagcatttaggtgcaattgatgctaaatctttcaatgcaagtcacaatagagaaacctcatcaaagcttcattta |
413 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33998153 |
tgaaaagagagacattggtccctacaagcatttaggtgcaattgatgctaaatctttcaatgcaagtcacaatagagaaacctcatcaaagcttcattta |
33998252 |
T |
 |
| Q |
414 |
aaggaatcaattttcaatctgt-caagatgaagttaggaagcacaatagcactattgtaagtgaatctgtccagaaaaagtaaaaccaattggtgccaat |
512 |
Q |
| |
|
|||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33998253 |
aaggaatcaattttgaatctgtccaagatgaagttaggaagcacaatagcactattgtaagtgaatctgtccagaaaaagtaaaaccaattggtgccaat |
33998352 |
T |
 |
| Q |
513 |
gaaataaggcatctcaacaagaataatctctatatctatgattgaatcttgagttaattaggtgaacgatatgcactccactctaacttgctacaagaat |
612 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33998353 |
gaaataaggcatctcaacaagaatgatctctatatctatgattgaatcttgagttaattaggtgaacgatatgcactccactctaacttgctacaagaat |
33998452 |
T |
 |
| Q |
613 |
tcaccacaatctcttatattgacaaatcatgacttttcaaatcaaattatacacatattcttcacaaggaatgatgttttaattagttaactgaaaacaa |
712 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33998453 |
tcaccacaatctcttatattgacaaatcatgacttttcaaatcaaattatacacatattcttcacaaggaatgatgttttaattagttaactgaaaacaa |
33998552 |
T |
 |
| Q |
713 |
tgcaacgataagatctgaagaaaat |
737 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
33998553 |
tgcaacgataagatctgaagaaaat |
33998577 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 15 - 115
Target Start/End: Complemental strand, 8747792 - 8747691
Alignment:
| Q |
15 |
gcaaaggggctaaatcttagggggcaaaattttcannnnnnn-attagggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttag |
113 |
Q |
| |
|
|||||||||||||| | ||||||||||||| |||| ||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| |
|
|
| T |
8747792 |
gcaaaggggctaaaacatagggggcaaaatattcattttttttattagggggccaaaatcgcaacattggcaaacttaaggggtcaaaactgtagtttag |
8747693 |
T |
 |
| Q |
114 |
cc |
115 |
Q |
| |
|
|| |
|
|
| T |
8747692 |
cc |
8747691 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 15 - 115
Target Start/End: Original strand, 8749004 - 8749104
Alignment:
| Q |
15 |
gcaaaggggctaaatcttagggggcaaaattttcannnnnnnattagggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttagc |
114 |
Q |
| |
|
|||||||||||||| | ||||||||||||| || | ||||||||||||||||||||||||| ||||||||| |||||||||| ||||||||||| |
|
|
| T |
8749004 |
gcaaaggggctaaaacatagggggcaaaatatttatttttttattagggggccaaaatcgcaacattggcaaacttaaggggtcaaaagtgtagtttagc |
8749103 |
T |
 |
| Q |
115 |
c |
115 |
Q |
| |
|
| |
|
|
| T |
8749104 |
c |
8749104 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 57 - 115
Target Start/End: Original strand, 8896953 - 8897011
Alignment:
| Q |
57 |
attagggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttagcc |
115 |
Q |
| |
|
|||||||| ||||||||| |||||| |||||||||||| |||||||||||||||||||| |
|
|
| T |
8896953 |
attaggggaccaaaatcgtaacattggcaaacttagggagtcaaaactgtagtttagcc |
8897011 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 57 - 117
Target Start/End: Original strand, 48157678 - 48157738
Alignment:
| Q |
57 |
attagggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttagccaa |
117 |
Q |
| |
|
|||||||||||||||||||| | ||| ||| ||||||||||||||||| ||||||||||| |
|
|
| T |
48157678 |
attagggggccaaaatcgcacctttatgaaagttagggggtcaaaactgcagtttagccaa |
48157738 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 59 - 115
Target Start/End: Complemental strand, 40168695 - 40168639
Alignment:
| Q |
59 |
tagggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttagcc |
115 |
Q |
| |
|
|||||||||||||||||| |||| ||| ||||||||||||||||| ||||||||| |
|
|
| T |
40168695 |
tagggggccaaaatcgcaccattgtaaaagttagggggtcaaaactgcagtttagcc |
40168639 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 122
Target Start/End: Original strand, 9397437 - 9397500
Alignment:
| Q |
59 |
tagggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttagccaagataa |
122 |
Q |
| |
|
||||||||||||||| ||||||| ||||||||||||| |||| || ||||||||||| |||| |
|
|
| T |
9397437 |
tagggggccaaaatcccaacattttaaaacttagggggtgaaaagtgcagtttagccaaaataa |
9397500 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 114
Target Start/End: Original strand, 40169781 - 40169836
Alignment:
| Q |
59 |
tagggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttagc |
114 |
Q |
| |
|
|||||||||||||||||| |||| ||| ||||||||||||||||| |||||||| |
|
|
| T |
40169781 |
tagggggccaaaatcgcaccattgtgaaagttagggggtcaaaactgcagtttagc |
40169836 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 67; Significance: 2e-29; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 15 - 117
Target Start/End: Original strand, 27553764 - 27553867
Alignment:
| Q |
15 |
gcaaaggggctaaatcttagggggcaaaattttcannnnnnn-attagggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttag |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
27553764 |
gcaaaggggctaaatcttagggggcaaaattttcattttttttattaggaggccaaaatcgcaacattagcaaacttagggggttaaaactgtagtttag |
27553863 |
T |
 |
| Q |
114 |
ccaa |
117 |
Q |
| |
|
|||| |
|
|
| T |
27553864 |
ccaa |
27553867 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 15 - 115
Target Start/End: Complemental strand, 27552553 - 27552452
Alignment:
| Q |
15 |
gcaaaggggctaaatcttagggggcaaaattttcannnnnnn-attagggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttag |
113 |
Q |
| |
|
||||||||| ||||||||||||||| ||||||||| ||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
27552553 |
gcaaaggggttaaatcttagggggctaaattttcattttttttattagggagccaaaatcgcaacattggcaaatttagggggtcaaaactgtagtttag |
27552454 |
T |
 |
| Q |
114 |
cc |
115 |
Q |
| |
|
|| |
|
|
| T |
27552453 |
cc |
27552452 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 57 - 115
Target Start/End: Complemental strand, 12812894 - 12812836
Alignment:
| Q |
57 |
attagggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttagcc |
115 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| | |||||||||||||| |||||| |
|
|
| T |
12812894 |
attagggggccaaaatctcaacattagcaaacttaagaggtcaaaactgtagcttagcc |
12812836 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 15 - 115
Target Start/End: Complemental strand, 10852013 - 10851913
Alignment:
| Q |
15 |
gcaaaggggctaaatcttagggggcaaaattttcannnnnnnattagggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttagc |
114 |
Q |
| |
|
|||||||||||||| | ||||||| |||||||||| | ||||||| |||||||||||||| ||| |||||||||||||||||||||||||| |
|
|
| T |
10852013 |
gcaaaggggctaaaacatagggggtaaaattttcatttttttaatagggggttaaaatcgcaacattgataaagttagggggtcaaaactgtagtttagc |
10851914 |
T |
 |
| Q |
115 |
c |
115 |
Q |
| |
|
| |
|
|
| T |
10851913 |
c |
10851913 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 59 - 117
Target Start/End: Original strand, 28851674 - 28851732
Alignment:
| Q |
59 |
tagggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttagccaa |
117 |
Q |
| |
|
||||||| ||||||||||||||| ||| ||||||||||||||||| ||||||||||| |
|
|
| T |
28851674 |
tagggggtcaaaatcgcaacattgtgaaagttagggggtcaaaactgcagtttagccaa |
28851732 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 68 - 116
Target Start/End: Complemental strand, 24192291 - 24192244
Alignment:
| Q |
68 |
aaaatcgcaacattagcaaacttagggggtcaaaactgtagtttagcca |
116 |
Q |
| |
|
||||||||||||||||||||||| |||| ||||||||||||||||||| |
|
|
| T |
24192291 |
aaaatcgcaacattagcaaactt-tggggccaaaactgtagtttagcca |
24192244 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 59 - 115
Target Start/End: Original strand, 45413479 - 45413535
Alignment:
| Q |
59 |
tagggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttagcc |
115 |
Q |
| |
|
|||||||||||||||||| |||| ||| ||||||||||||||||| ||||||||| |
|
|
| T |
45413479 |
tagggggccaaaatcgcaccattgtgaaagttagggggtcaaaactgcagtttagcc |
45413535 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 59 - 117
Target Start/End: Complemental strand, 1389289 - 1389231
Alignment:
| Q |
59 |
tagggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttagccaa |
117 |
Q |
| |
|
|||||||||||||||||| |||| ||| ||||||||| ||||||| ||||||||||| |
|
|
| T |
1389289 |
tagggggccaaaatcgcaccattctgaaagttagggggttaaaactgcagtttagccaa |
1389231 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 15 - 45
Target Start/End: Complemental strand, 28618023 - 28617993
Alignment:
| Q |
15 |
gcaaaggggctaaatcttagggggcaaaatt |
45 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
28618023 |
gcaaaggggctaaatcttagggggcaaaatt |
28617993 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 62; Significance: 2e-26; HSPs: 10)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 265 - 378
Target Start/End: Original strand, 6230075 - 6230188
Alignment:
| Q |
265 |
gtgttgaaggaacatagttatgggatccgtatggtataagtatggagcttggaaagagagacattggtccctacaagcatttaggtgcaattgatgctaa |
364 |
Q |
| |
|
|||||||||||||| |||| ||||| |||||||| || || |||| |||||| ||| || ||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
6230075 |
gtgttgaaggaacagagttttgggacccgtatggcatctgtctggaatttggaaggagggatattggtccctacaagcatttatgtgcaattgatgctaa |
6230174 |
T |
 |
| Q |
365 |
atctttcaatgcaa |
378 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
6230175 |
atctttcaatgcaa |
6230188 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 15 - 117
Target Start/End: Original strand, 46525799 - 46525902
Alignment:
| Q |
15 |
gcaaaggggctaaatcttagggggcaaaattttcannnnnnn-attagggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttag |
113 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| |||||| |||||||||||||||||| |||||||||||||| ||||||||||| |||| |
|
|
| T |
46525799 |
gcaaaggggctaaatcttagggggccaaattttcattttttttattaggaggccaaaatcgcaacattggcaaacttagggggccaaaactgtagattag |
46525898 |
T |
 |
| Q |
114 |
ccaa |
117 |
Q |
| |
|
|||| |
|
|
| T |
46525899 |
ccaa |
46525902 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 57 - 115
Target Start/End: Complemental strand, 46312123 - 46312065
Alignment:
| Q |
57 |
attagggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttagcc |
115 |
Q |
| |
|
||||||||||||||||||||||||| | ||| ||||||||||||||||||||||||||| |
|
|
| T |
46312123 |
attagggggccaaaatcgcaacattggtaaagttagggggtcaaaactgtagtttagcc |
46312065 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 15 - 117
Target Start/End: Complemental strand, 2999591 - 2999489
Alignment:
| Q |
15 |
gcaaaggggctaaatcttagggggcaaaattttcannnnnnnattagggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttagc |
114 |
Q |
| |
|
|||||||||||||| ||||||| ||||||||||| |||||||| ||||||||||||||| |||| |||| ||||||||||||||||||||| |
|
|
| T |
2999591 |
gcaaaggggctaaaatttaggggtcaaaattttcatttttttattaggggatcaaaatcgcaacattgacaaagttagagggtcaaaactgtagtttagc |
2999492 |
T |
 |
| Q |
115 |
caa |
117 |
Q |
| |
|
||| |
|
|
| T |
2999491 |
caa |
2999489 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 15 - 115
Target Start/End: Original strand, 3000170 - 3000271
Alignment:
| Q |
15 |
gcaaaggggctaaatcttagggggcaaaattttcannnnnnn-attagggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttag |
113 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| | ||||| || |||||||||||||||| |||| ||| ||||||||||||||||||||| |
|
|
| T |
3000170 |
gcaaaggggctaaaacttagggggcaaaatttttattttttttattagaggatcaaaatcgcaacattaacaaaattaaggggtcaaaactgtagtttag |
3000269 |
T |
 |
| Q |
114 |
cc |
115 |
Q |
| |
|
|| |
|
|
| T |
3000270 |
cc |
3000271 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 68 - 115
Target Start/End: Original strand, 14512669 - 14512716
Alignment:
| Q |
68 |
aaaatcgcaacattagcaaacttagggggtcaaaactgtagtttagcc |
115 |
Q |
| |
|
|||||||||||||||| |||||||||||| |||||||||||||||||| |
|
|
| T |
14512669 |
aaaatcgcaacattagtaaacttagggggccaaaactgtagtttagcc |
14512716 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 113
Target Start/End: Complemental strand, 46524641 - 46524542
Alignment:
| Q |
15 |
gcaaaggggctaaatcttagggggcaaaattttcannnnnnn-attagggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttag |
113 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| | || ||||| ||||||| |||||||| | |||||||||||| |||||||||||||||| |
|
|
| T |
46524641 |
gcaaaggggctaaatcttagggggccaaatttttattttttttatcaggggaccaaaattgcaacattggtaaacttagggggccaaaactgtagtttag |
46524542 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 115
Target Start/End: Complemental strand, 14204939 - 14204837
Alignment:
| Q |
15 |
gcaaaggggctaaatcttag-ggggcaaaattttcannnnnnn-attagggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagttta |
112 |
Q |
| |
|
|||||||||||||||||||| |||| |||||||||| ||||| |||||||||||||| |||| ||||| || |||| ||||||||||||||| |
|
|
| T |
14204939 |
gcaaaggggctaaatcttagaggggtaaaattttcaatatttttattagagggccaaaatcgcagcattgtcaaacataaggggccaaaactgtagttta |
14204840 |
T |
 |
| Q |
113 |
gcc |
115 |
Q |
| |
|
||| |
|
|
| T |
14204839 |
gcc |
14204837 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 57 - 115
Target Start/End: Original strand, 50379972 - 50380030
Alignment:
| Q |
57 |
attagggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttagcc |
115 |
Q |
| |
|
|||||||| ||||||||||| | ||| ||| ||||||||||||||||| ||||||||| |
|
|
| T |
50379972 |
attaggggaccaaaatcgcacctttatgaaagttagggggtcaaaactgcagtttagcc |
50380030 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 120
Target Start/End: Original strand, 43706901 - 43706962
Alignment:
| Q |
59 |
tagggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttagccaagat |
120 |
Q |
| |
|
||||||||||||||||||||||| ||| |||||||| |||| || |||||||||||||| |
|
|
| T |
43706901 |
tagggggccaaaatcgcaacattttaaaaattagggggcaaaaagtggagtttagccaagat |
43706962 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 59; Significance: 1e-24; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 15 - 117
Target Start/End: Original strand, 10584039 - 10584142
Alignment:
| Q |
15 |
gcaaaggggctaaatcttagggggcaaaattttcannnnnnn-attagggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttag |
113 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| | ||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |
|
|
| T |
10584039 |
gcaaaggggctaaatcttagggggccaaattttaattttttttattagggggccaaaatcgcaacattggcaaacttaggggatcaaaactgtagtttag |
10584138 |
T |
 |
| Q |
114 |
ccaa |
117 |
Q |
| |
|
|||| |
|
|
| T |
10584139 |
ccaa |
10584142 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 15 - 117
Target Start/End: Complemental strand, 32829841 - 32829738
Alignment:
| Q |
15 |
gcaaaggggctaaatcttagggggcaaaattttcannnnnnn-attagggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttag |
113 |
Q |
| |
|
|||||||||||||| | ||||||||||||| |||| ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |
|
|
| T |
32829841 |
gcaaaggggctaaaacatagggggcaaaatattcattttttttattagggggccaaaatcgcaaaattggcaaacttagggggtcaaaactgtagtttag |
32829742 |
T |
 |
| Q |
114 |
ccaa |
117 |
Q |
| |
|
|||| |
|
|
| T |
32829741 |
ccaa |
32829738 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 15 - 115
Target Start/End: Original strand, 51220560 - 51220660
Alignment:
| Q |
15 |
gcaaaggggctaaatcttagggggcaaaattttcannnnnnnattagggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttagc |
114 |
Q |
| |
|
|||||||||||||| | ||||||||||||| |||| |||||||||| |||||||||||||| |||||||| |||||||||||||||||||||| |
|
|
| T |
51220560 |
gcaaaggggctaaaacatagggggcaaaatattcatttttttattagggggctaaaatcgcaacattgacaaacttaaggggtcaaaactgtagtttagc |
51220659 |
T |
 |
| Q |
115 |
c |
115 |
Q |
| |
|
| |
|
|
| T |
51220660 |
c |
51220660 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 59 - 117
Target Start/End: Complemental strand, 26722589 - 26722531
Alignment:
| Q |
59 |
tagggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttagccaa |
117 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||||| |||||||||||||||||||| |
|
|
| T |
26722589 |
tagggggccaaaatcgcaacattggtaaacttagggggccaaaactgtagtttagccaa |
26722531 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 59 - 115
Target Start/End: Original strand, 26723906 - 26723962
Alignment:
| Q |
59 |
tagggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttagcc |
115 |
Q |
| |
|
|||||||||||||| |||||||||| |||||||||||| |||||||||||||||||| |
|
|
| T |
26723906 |
tagggggccaaaattgcaacattagtaaacttagggggccaaaactgtagtttagcc |
26723962 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 57 - 117
Target Start/End: Complemental strand, 51219520 - 51219460
Alignment:
| Q |
57 |
attagggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttagccaa |
117 |
Q |
| |
|
|||||||||||||||| |||||||| |||||||||| ||||||||||||||||||||||| |
|
|
| T |
51219520 |
attagggggccaaaattgcaacattgacaaacttaggaggtcaaaactgtagtttagccaa |
51219460 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 57 - 115
Target Start/End: Original strand, 32831090 - 32831148
Alignment:
| Q |
57 |
attagggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttagcc |
115 |
Q |
| |
|
||||| ||| ||||||||||||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
32831090 |
attagagggtcaaaatcgcaacattgacaaacatagggggtcaaaactgtagtttagcc |
32831148 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 57 - 115
Target Start/End: Original strand, 53157176 - 53157233
Alignment:
| Q |
57 |
attagggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttagcc |
115 |
Q |
| |
|
||||| |||||| |||||||||||| ||||||||| ||||||||||||||||||||||| |
|
|
| T |
53157176 |
attagagggccagaatcgcaacattggcaaactta-ggggtcaaaactgtagtttagcc |
53157233 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 2e-23; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 15 - 115
Target Start/End: Original strand, 9805383 - 9805484
Alignment:
| Q |
15 |
gcaaaggggctaaatcttagggggcaaaattttcannnnnnn-attagggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttag |
113 |
Q |
| |
|
||||||||||||||||| ||||||| ||||||||| ||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
9805383 |
gcaaaggggctaaatctcagggggccaaattttcattttttctattagagggccaaaatcgcaacattggcaaacttagggggtcaaaactgtagtttag |
9805482 |
T |
 |
| Q |
114 |
cc |
115 |
Q |
| |
|
|| |
|
|
| T |
9805483 |
cc |
9805484 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 15 - 117
Target Start/End: Complemental strand, 35080384 - 35080281
Alignment:
| Q |
15 |
gcaaaggggctaaatcttagggggcaaaattttcannnnnnn-attagggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttag |
113 |
Q |
| |
|
|||||||||||||| | ||||||||||||| |||| |||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
35080384 |
gcaaaggggctaaaacatagggggcaaaatattcattttttttattaggggaccaaaatcgcaacattggcaaacttagggggtcaaaactgtagtttag |
35080285 |
T |
 |
| Q |
114 |
ccaa |
117 |
Q |
| |
|
|||| |
|
|
| T |
35080284 |
ccaa |
35080281 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 15 - 115
Target Start/End: Original strand, 35081558 - 35081659
Alignment:
| Q |
15 |
gcaaaggggctaaatcttagggggcaaaattttcannnnnnn-attagggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttag |
113 |
Q |
| |
|
|||||||||||||| | ||||||||||||| |||| ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
35081558 |
gcaaaggggctaaaacatagggggcaaaatattcattttttttattagggcgccaaaatcgcaacattgacaaacttagggggtcaaaactgtagtttag |
35081657 |
T |
 |
| Q |
114 |
cc |
115 |
Q |
| |
|
|| |
|
|
| T |
35081658 |
cc |
35081659 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 66 - 115
Target Start/End: Original strand, 23621990 - 23622039
Alignment:
| Q |
66 |
ccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttagcc |
115 |
Q |
| |
|
|||||||||||||||| ||||||||||| || |||||||||||||||||| |
|
|
| T |
23621990 |
ccaaaatcgcaacattggcaaacttaggaggccaaaactgtagtttagcc |
23622039 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 53; Significance: 5e-21; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 57 - 117
Target Start/End: Complemental strand, 22417716 - 22417656
Alignment:
| Q |
57 |
attagggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttagccaa |
117 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
22417716 |
attagggggccaaaatcgtaacattagcaaacttagggggtcaaaactgtagtttaaccaa |
22417656 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 15 - 120
Target Start/End: Original strand, 22418894 - 22419000
Alignment:
| Q |
15 |
gcaaaggggctaaatcttagggggcaaaattttca-nnnnnnnattagggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttag |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||| | ||||||| |||||| ||||||||||||| |||||| ||||||||| |
|
|
| T |
22418894 |
gcaaaggggctaaatcttagggggcaaaattttcattttttttattaggggacaaaaatcgtaacattgacaaacttagggggccaaaaccgtagtttag |
22418993 |
T |
 |
| Q |
114 |
ccaagat |
120 |
Q |
| |
|
|| |||| |
|
|
| T |
22418994 |
cctagat |
22419000 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 59 - 123
Target Start/End: Original strand, 6978139 - 6978203
Alignment:
| Q |
59 |
tagggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttagccaagataat |
123 |
Q |
| |
|
||||| |||||||||||| |||| ||| ||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
6978139 |
tagggagccaaaatcgcaccattgtgaaagttagggggttaaaactgcagtttagccaagataat |
6978203 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 59 - 115
Target Start/End: Complemental strand, 20409123 - 20409067
Alignment:
| Q |
59 |
tagggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttagcc |
115 |
Q |
| |
|
|||||||||||||||||| |||| ||| ||||||||||||||||| ||||||||| |
|
|
| T |
20409123 |
tagggggccaaaatcgcaccattgtgaaagttagggggtcaaaactgcagtttagcc |
20409067 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 115
Target Start/End: Complemental strand, 12181650 - 12181595
Alignment:
| Q |
60 |
agggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttagcc |
115 |
Q |
| |
|
|||||||||||||| ||||||| |||| ||||| ||||||||||| ||||||||| |
|
|
| T |
12181650 |
agggggccaaaatcccaacatttacaaagttaggaggtcaaaactgcagtttagcc |
12181595 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 67 - 117
Target Start/End: Complemental strand, 10120223 - 10120173
Alignment:
| Q |
67 |
caaaatcgcaacattagcaaacttagggggtcaaaactgtagtttagccaa |
117 |
Q |
| |
|
||||||||||||||| ||||||||||||| ||||| ||| |||||||||| |
|
|
| T |
10120223 |
caaaatcgcaacattgacaaacttagggggccaaaattgttgtttagccaa |
10120173 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 96
Target Start/End: Complemental strand, 15889027 - 15888990
Alignment:
| Q |
59 |
tagggggccaaaatcgcaacattagcaaacttaggggg |
96 |
Q |
| |
|
|||||||||||||| |||||||| |||||||||||||| |
|
|
| T |
15889027 |
tagggggccaaaattgcaacatttgcaaacttaggggg |
15888990 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 2e-20; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 15 - 115
Target Start/End: Original strand, 124487 - 124587
Alignment:
| Q |
15 |
gcaaaggggctaaatcttagggggcaaaattttcannnnnnnattagggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttagc |
114 |
Q |
| |
|
|||||||||||||| ||||||||||||| |||| ||||||||||||||||||||||||| ||||||||| | |||||||||||||||||||| |
|
|
| T |
124487 |
gcaaaggggctaaaatatagggggcaaaatattcatttttttattagggggccaaaatcgcaacattggcaaacttaagaggtcaaaactgtagtttagc |
124586 |
T |
 |
| Q |
115 |
c |
115 |
Q |
| |
|
| |
|
|
| T |
124587 |
c |
124587 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 15 - 117
Target Start/End: Original strand, 5504093 - 5504196
Alignment:
| Q |
15 |
gcaaaggggctaaatcttagggggcaaaattttcannnnnnn-attagggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttag |
113 |
Q |
| |
|
|||||||||||||| | ||||||||||||| |||| ||||||||| ||||||||||||||| ||||||||| | ||||||||||||||||||| |
|
|
| T |
5504093 |
gcaaaggggctaaaacatagggggcaaaatattcattttttttattagggggtcaaaatcgcaacattggcaaacttaagaggtcaaaactgtagtttag |
5504192 |
T |
 |
| Q |
114 |
ccaa |
117 |
Q |
| |
|
|||| |
|
|
| T |
5504193 |
ccaa |
5504196 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 62 - 115
Target Start/End: Complemental strand, 3597376 - 3597323
Alignment:
| Q |
62 |
ggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttagcc |
115 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| |||||||||||||||||| |
|
|
| T |
3597376 |
ggggccaaaatcgcaacattagtaaacttagggggccaaaactgtagtttagcc |
3597323 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 59 - 117
Target Start/End: Original strand, 3598924 - 3598982
Alignment:
| Q |
59 |
tagggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttagccaa |
117 |
Q |
| |
|
||||||||||||||||||||||| | ||| ||||||| |||||||||||||||||||| |
|
|
| T |
3598924 |
tagggggccaaaatcgcaacattggtaaatttaggggaccaaaactgtagtttagccaa |
3598982 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 57 - 115
Target Start/End: Complemental strand, 5502975 - 5502918
Alignment:
| Q |
57 |
attagggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttagcc |
115 |
Q |
| |
|
|||||||||||||||| |||||||| ||||||||| |||||||||||||||||||||| |
|
|
| T |
5502975 |
attagggggccaaaattgcaacattggcaaactta-agggtcaaaactgtagtttagcc |
5502918 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 57 - 115
Target Start/End: Complemental strand, 121407 - 121349
Alignment:
| Q |
57 |
attagggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttagcc |
115 |
Q |
| |
|
||||||||| |||||| |||||||| ||||| |||| | |||||||||||||||||||| |
|
|
| T |
121407 |
attagggggtcaaaattgcaacattggcaaatttagagtgtcaaaactgtagtttagcc |
121349 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 116
Target Start/End: Complemental strand, 14189722 - 14189663
Alignment:
| Q |
57 |
attagggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttagcca |
116 |
Q |
| |
|
|||||||| ||||||||||| | ||| ||| ||||||||||||||||| |||||||||| |
|
|
| T |
14189722 |
attaggggaccaaaatcgcacctttatgaaagttagggggtcaaaactgcagtttagcca |
14189663 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 57 - 115
Target Start/End: Original strand, 14190487 - 14190545
Alignment:
| Q |
57 |
attagggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttagcc |
115 |
Q |
| |
|
|||||||| ||||||||||| | ||| ||| ||||||||||||||||| ||||||||| |
|
|
| T |
14190487 |
attaggggaccaaaatcgcacctttatgaaagttagggggtcaaaactgcagtttagcc |
14190545 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 59 - 117
Target Start/End: Complemental strand, 17414600 - 17414542
Alignment:
| Q |
59 |
tagggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttagccaa |
117 |
Q |
| |
|
|||||||||||||||||| |||| ||| |||| |||||||||||| ||||||||||| |
|
|
| T |
17414600 |
tagggggccaaaatcgcaccattgtaaaagttagagggtcaaaactgcagtttagccaa |
17414542 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 63 - 117
Target Start/End: Original strand, 17415695 - 17415749
Alignment:
| Q |
63 |
gggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttagccaa |
117 |
Q |
| |
|
|||||||||||||| |||| ||| ||||||||||||||||| ||||||||||| |
|
|
| T |
17415695 |
gggccaaaatcgcaccattgtgaaagttagggggtcaaaactgcagtttagccaa |
17415749 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 67 - 115
Target Start/End: Original strand, 13883878 - 13883926
Alignment:
| Q |
67 |
caaaatcgcaacattagcaaacttagggggtcaaaactgtagtttagcc |
115 |
Q |
| |
|
||||||||||||||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
13883878 |
caaaatcgcaacattgacaaacttaaggggtcaaaactgtagtttagcc |
13883926 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 115
Target Start/End: Complemental strand, 38612275 - 38612219
Alignment:
| Q |
59 |
tagggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttagcc |
115 |
Q |
| |
|
||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||| |
|
|
| T |
38612275 |
tagggggccaaaatcgcaacattgtgaaagttagggggtcaaaactgcagtttagcc |
38612219 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 115
Target Start/End: Original strand, 38613419 - 38613475
Alignment:
| Q |
59 |
tagggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttagcc |
115 |
Q |
| |
|
||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||| |
|
|
| T |
38613419 |
tagggggccaaaatcgcaacattgtgaaagttagggggtcaaaactgcagtttagcc |
38613475 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 15 - 115
Target Start/End: Complemental strand, 13882756 - 13882655
Alignment:
| Q |
15 |
gcaaaggggctaaatcttagggggcaaaattttcannnnnnn-attagggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttag |
113 |
Q |
| |
|
|||||||||||||| | ||||||||||||| |||| ||||||||| |||||| ||||||| ||||||||||| | |||||| |||||||||| |
|
|
| T |
13882756 |
gcaaaggggctaaaacatagggggcaaaatattcattttttttattagggggtcaaaattacaacattggcaaacttaggagatcaaaattgtagtttag |
13882657 |
T |
 |
| Q |
114 |
cc |
115 |
Q |
| |
|
|| |
|
|
| T |
13882656 |
cc |
13882655 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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