View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17239_high_33 (Length: 238)

Name: NF17239_high_33
Description: NF17239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17239_high_33
NF17239_high_33
[»] chr5 (3 HSPs)
chr5 (19-219)||(2682191-2682392)
chr5 (19-219)||(842432-842632)
chr5 (25-105)||(13640312-13640392)
[»] chr4 (7 HSPs)
chr4 (19-219)||(19837585-19837786)
chr4 (19-138)||(43469468-43469587)
chr4 (23-218)||(19309077-19309273)
chr4 (20-113)||(53678709-53678802)
chr4 (167-218)||(14529203-14529254)
chr4 (165-218)||(17997370-17997423)
chr4 (172-220)||(7447365-7447413)
[»] chr6 (6 HSPs)
chr6 (19-220)||(5866353-5866555)
chr6 (20-219)||(1308156-1308356)
chr6 (20-219)||(16467870-16468070)
chr6 (23-85)||(3489482-3489544)
chr6 (165-219)||(14551999-14552053)
chr6 (74-114)||(10922058-10922098)
[»] chr3 (3 HSPs)
chr3 (23-219)||(11584531-11584728)
chr3 (20-219)||(19233516-19233715)
chr3 (20-129)||(16896155-16896264)
[»] chr8 (1 HSPs)
chr8 (19-219)||(41691249-41691450)
[»] chr7 (5 HSPs)
chr7 (20-219)||(4164490-4164690)
chr7 (41-219)||(45459784-45459963)
chr7 (20-219)||(34206781-34206981)
chr7 (167-218)||(45844840-45844891)
chr7 (169-218)||(28740424-28740473)
[»] scaffold0674 (1 HSPs)
scaffold0674 (165-218)||(589-642)
[»] chr2 (3 HSPs)
chr2 (165-218)||(20636897-20636950)
chr2 (172-219)||(27336121-27336168)
chr2 (165-218)||(18669705-18669758)
[»] chr1 (1 HSPs)
chr1 (165-215)||(22584166-22584216)


Alignment Details
Target: chr5 (Bit Score: 126; Significance: 4e-65; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 19 - 219
Target Start/End: Original strand, 2682191 - 2682392
Alignment:
Q  19 acctaaacgttttgatatactttcttcaaaccaactaccaccctccacacctatgccattttgaattctaactatctccctccaccaagatgaacatgtc 118  Q
    ||||||| ||||| |||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||    
T  2682191 acctaaatgttttaatatacttccttcaaaccaactaccactctccacacctatgccattttgaattctaacaatctccctccaccaagatgaacctgtc 2682290  T
Q  119 acgccaccctctcttaaccgatctctcttcgccccatagcgagagg-caacaccttaaaccacaaactctccctgtccactaaacacctccaacaccatt 217  Q
    ||||||||||||| || || | |||||| | ||| |||||||||||  |||||||||||||||| || ||||||||||||||| ||||||||||||||||    
T  2682291 acgccaccctctcgtagcctacctctctcctccctatagcgagaggaaaacaccttaaaccacagaccctccctgtccactaagcacctccaacaccatt 2682390  T
Q  218 ta 219  Q
    ||    
T  2682391 ta 2682392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 19 - 219
Target Start/End: Original strand, 842432 - 842632
Alignment:
Q  19 acctaaacgttttgatatactttcttcaaaccaactaccaccctccacacctatgccattttgaattctaactatctccctccaccaagatgaacatgtc 118  Q
    |||||||| |||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| ||||||||||||||||| ||| ||| |  |||    
T  842432 acctaaacattttgatatactttcttcaaaccaactatcaccctccacacctattccattttgaattttaactatctccctccactaagctgaccccgtc 842531  T
Q  119 acgccaccctctcttaaccgatctctcttcgccccatagcgag-aggcaacaccttaaaccacaaactctccctgtccactaaacacctccaacaccatt 217  Q
    || |||||||| || ||||||  ||||| |  | |||| |||| || |||||| ||||||||||||| || ||| |||||||||||| ||||||||||||    
T  842532 acaccaccctccctcaaccgacatctctgctactcataacgagaagacaacacattaaaccacaaaccct-cctatccactaaacacttccaacaccatt 842630  T
Q  218 ta 219  Q
    ||    
T  842631 ta 842632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 105
Target Start/End: Complemental strand, 13640392 - 13640312
Alignment:
Q  25 acgttttgatatactttcttcaaaccaactaccaccctccacacctatgccattttgaattctaactatctccctccacca 105  Q
    |||||||| |||||| |||||||||||| | |||||||  |||||||| || |  |||||| | |||||||||||||||||    
T  13640392 acgttttgttatactatcttcaaaccaattcccacccttaacacctatcccgtcatgaatttttactatctccctccacca 13640312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 106; Significance: 4e-53; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 19 - 219
Target Start/End: Original strand, 19837585 - 19837786
Alignment:
Q  19 acctaaacgttttgatatactttcttcaaaccaactaccaccctccacacctatgccattttgaattctaactatctccctccaccaagatgaacatgtc 118  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||| || |||||||||||| ||||||||||||||||||| | ||| |  ||     
T  19837585 acctaaacgtttggatatactttcttcaaaccaactaccaccctccacaccaattccattttgaattttaactatctccctccaccatgctgaccccgtt 19837684  T
Q  119 acgccaccctctcttaaccgatctctcttcgccccatagcgag-aggcaacaccttaaaccacaaactctccctgtccactaaacacctccaacaccatt 217  Q
    || ||||| || || |||||| |||||| | ||||||| |||| || |||||||||||||||||| | |||||| |||||||||||||||||||||||||    
T  19837685 acaccaccttccctcaaccgacctctctgctccccataacgagaagacaacaccttaaaccacaagccctccctatccactaaacacctccaacaccatt 19837784  T
Q  218 ta 219  Q
    ||    
T  19837785 ta 19837786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 19 - 138
Target Start/End: Complemental strand, 43469587 - 43469468
Alignment:
Q  19 acctaaacgttttgatatactttcttcaaaccaactaccaccctccacacctatgccattttgaattctaactatctccctccaccaagatgaacatgtc 118  Q
    |||||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||| |||| | || |||||||||||||||| ||| |  |||    
T  43469587 acctaaacgttttgttacactttcttcaaaccaactacaaccctccacacctatgccattttaaatttttacaatctccctccaccaagctgaccccgtc 43469488  T
Q  119 acgccaccctctcttaaccg 138  Q
     |||||||||| ||||||||    
T  43469487 gcgccaccctcccttaaccg 43469468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 23 - 218
Target Start/End: Complemental strand, 19309273 - 19309077
Alignment:
Q  23 aaacgttttgatatactttcttcaaaccaactaccaccctccacacctatgccattttgaattctaactatctccctccaccaagatgaacatgtcacgc 122  Q
    |||||||||  ||||||||||||||||||| |  |||||||||||||||| |||||||||||| | |||||||||||||||||||  || |  ||||| |    
T  19309273 aaacgttttattatactttcttcaaaccaattctcaccctccacacctattccattttgaatttttactatctccctccaccaagcagaccccgtcactc 19309174  T
Q  123 caccctctcttaaccgatctctcttcgccccatagcgag-aggcaacaccttaaaccacaaactctccctgtccactaaacacctccaacaccattt 218  Q
    ||||||| ||||||||  |||| |   ||||||| || | |  |||||||||| |||| || | ||||||| |||||||||| ||||||||||||||    
T  19309173 caccctcccttaaccgccctctatgttccccataacgggaaaacaacaccttataccataagccctccctgaccactaaacatctccaacaccattt 19309077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 20 - 113
Target Start/End: Complemental strand, 53678802 - 53678709
Alignment:
Q  20 cctaaacgttttgatatactttcttcaaaccaactaccaccctccacacctatgccattttgaattctaactatctccctccaccaagatgaac 113  Q
    |||||||||||||| ||||||| ||| |||||||||||||| ||||| ||||   ||||||||||| ||| ||||||| ||||||||| |||||    
T  53678802 cctaaacgttttgagatacttttttcgaaccaactaccaccttccacgcctacatcattttgaattttaattatctccttccaccaagctgaac 53678709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 167 - 218
Target Start/End: Original strand, 14529203 - 14529254
Alignment:
Q  167 acaccttaaaccacaaactctccctgtccactaaacacctccaacaccattt 218  Q
    ||||||||||||||||||| ||||| ||||||||||||||||||||| ||||    
T  14529203 acaccttaaaccacaaactgtccctatccactaaacacctccaacacaattt 14529254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 165 - 218
Target Start/End: Original strand, 17997370 - 17997423
Alignment:
Q  165 caacaccttaaaccacaaactctccctgtccactaaacacctccaacaccattt 218  Q
    |||||||| |||||||||| | ||||| | ||||||||||||||||||||||||    
T  17997370 caacacctgaaaccacaaattgtccctattcactaaacacctccaacaccattt 17997423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 220
Target Start/End: Original strand, 7447365 - 7447413
Alignment:
Q  172 ttaaaccacaaactctccctgtccactaaacacctccaacaccatttag 220  Q
    ||||||||||| |  || || ||||||||||||||||||||||||||||    
T  7447365 ttaaaccacaacccgtctctatccactaaacacctccaacaccatttag 7447413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 99; Significance: 5e-49; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 19 - 220
Target Start/End: Complemental strand, 5866555 - 5866353
Alignment:
Q  19 acctaaacgttttgatatactttcttcaaaccaactaccaccctccacacctatgccattttgaattctaactatctccctccaccaagatgaacatgtc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||| ||||||||||||||||||  | ||| |  |||    
T  5866555 acctaaacgttttgatatactttcttcaaaccaactaccaccctctacaccaattccattttgaattttaactatctccctccaccgtgctgaccccgtc 5866456  T
Q  119 acgccaccctctcttaaccgatctctcttcgccccatagcgag-aggcaacaccttaaaccacaaactctccctgtccactaaacacctccaacaccatt 217  Q
    || ||||| ||  | |||||| |||||| | ||||||| |||| || |||||||||||||||||| | |||||| |||||||||||||||||||| ||||    
T  5866455 acaccaccttccttcaaccgacctctctgctccccataacgagaagacaacaccttaaaccacaagccctccctatccactaaacacctccaacatcatt 5866356  T
Q  218 tag 220  Q
    |||    
T  5866355 tag 5866353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 20 - 219
Target Start/End: Complemental strand, 1308356 - 1308156
Alignment:
Q  20 cctaaacgttttgatatactttcttcaaaccaactaccaccctccacacctatgccattttgaattctaactatctccctccaccaagatgaacatgtca 119  Q
    |||||||||||||| ||||||||||| |||||||||||||| |||||| |||  |||||||||||| ||| ||||||||||||||||| ||||| |||||    
T  1308356 cctaaacgttttgagatactttcttcgaaccaactaccaccttccacatctactccattttgaattttaattatctccctccaccaagctgaacctgtca 1308257  T
Q  120 cgccaccctctcttaaccgatctctcttcgccccatagcgagagg-caacaccttaaaccacaaactctccctgtccactaaacacctccaacaccattt 218  Q
     ||| |||||  | |||||| | |  | | ||||||| ||||||| ||||||| ||||||| |||| |||||| ||||||||||||||||||||||||||    
T  1308256 tgcccccctccttcaaccgaccaccttgctccccatatcgagaggacaacaccctaaaccataaaccctccctatccactaaacacctccaacaccattt 1308157  T
Q  219 a 219  Q
    |    
T  1308156 a 1308156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 20 - 219
Target Start/End: Original strand, 16467870 - 16468070
Alignment:
Q  20 cctaaacgttttgatatactttcttcaaaccaactaccaccctccacacctatgccattttgaattctaactatctccctccaccaagatgaacatgtca 119  Q
    ||||||||||| || ||| ||||||| |||||||||||||| || || ||||  |||||||||||| ||| ||||||||||||||||| | |||  ||||    
T  16467870 cctaaacgtttagagatattttcttcgaaccaactaccaccttcgacgcctacaccattttgaattttaattatctccctccaccaagctaaacccgtca 16467969  T
Q  120 cgccaccctctcttaaccgatctctcttcgccccatagcgagagg-caacaccttaaaccacaaactctccctgtccactaaacacctccaacaccattt 218  Q
    |||| |||||    |||||| | |  | | ||||||| ||||||| ||||||| ||||||| |||| |||||| ||||  |||||| |||||||||||||    
T  16467970 cgcccccctcctacaaccgaccaccttgctccccatatcgagaggacaacaccctaaaccataaaccctccctatccatgaaacacgtccaacaccattt 16468069  T
Q  219 a 219  Q
    |    
T  16468070 a 16468070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 23 - 85
Target Start/End: Complemental strand, 3489544 - 3489482
Alignment:
Q  23 aaacgttttgatatactttcttcaaaccaactaccaccctccacacctatgccattttgaatt 85  Q
    |||||||||| ||||||||||||||||||||| ||||||||||| ||||| ||||||||||||    
T  3489544 aaacgttttgttatactttcttcaaaccaactcccaccctccactcctattccattttgaatt 3489482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 165 - 219
Target Start/End: Original strand, 14551999 - 14552053
Alignment:
Q  165 caacaccttaaaccacaaactctccctgtccactaaacacctccaacaccattta 219  Q
    |||||||||| ||||||||| ||| || ||||||| |||||||||||||||||||    
T  14551999 caacaccttataccacaaaccctctctatccactagacacctccaacaccattta 14552053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 114
Target Start/End: Original strand, 10922058 - 10922098
Alignment:
Q  74 ccattttgaattctaactatctccctccaccaagatgaaca 114  Q
    |||| ||||||||| |||||||||||||||||||| |||||    
T  10922058 ccatcttgaattctcactatctccctccaccaagaagaaca 10922098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 90; Significance: 1e-43; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 23 - 219
Target Start/End: Original strand, 11584531 - 11584728
Alignment:
Q  23 aaacgttttgatatactttcttcaaaccaactaccaccctccacacctatgccattttgaattctaactatctccctccaccaagatgaacatgtcacgc 122  Q
    |||||||||| |||||||||||| |||||||||| ||||||||||||||| |||||||||||| || || ||||||||||||||| | ||| | ||  ||    
T  11584531 aaacgttttgttatactttcttcgaaccaactactaccctccacacctattccattttgaattttagctctctccctccaccaagctaaacctatcgtgc 11584630  T
Q  123 caccctctcttaaccgatctctcttcgccccatagcgagagg-caacaccttaaaccacaaactctccctgtccactaaacacctccaacaccattta 219  Q
    ||||||| || |||| | |||||| | ||||||| ||||||| ||| ||||||||||||| || |||| |||||| ||||||||||||||||||||||    
T  11584631 caccctccctcaacctacctctctgctccccataccgagaggacaaaaccttaaaccacagaccctccatgtccattaaacacctccaacaccattta 11584728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 20 - 219
Target Start/End: Original strand, 19233516 - 19233715
Alignment:
Q  20 cctaaacgttttgatatactttcttcaaaccaactaccaccctccacacctatgccattttgaattctaactatctccctccaccaagatgaacatgtca 119  Q
    |||||||||||||| ||||||||||| ||||||||||| || ||||| ||||  |||||||||||| ||| ||||||||||||||||| |||||  ||||    
T  19233516 cctaaacgttttgagatactttcttcgaaccaactacctccttccacgcctacaccattttgaattttaattatctccctccaccaagctgaacccgtca 19233615  T
Q  120 cgccaccctctcttaaccgatctctcttcgccccatagcgagagg-caacaccttaaaccacaaactctccctgtccactaaacacctccaacaccattt 218  Q
    | || |||||  | |||||| | |  | | ||||||| ||||||| ||||||| ||||||| |||| |||||| ||||||||||||||||||||||||||    
T  19233616 cacc-ccctccttcaaccgaccaccttgctccccatatcgagaggacaacaccctaaaccataaaccctccctatccactaaacacctccaacaccattt 19233714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 20 - 129
Target Start/End: Complemental strand, 16896264 - 16896155
Alignment:
Q  20 cctaaacgttttgatatactttcttcaaaccaactaccaccctccacacctatgccattttgaattctaactatctccctccaccaagatgaacatgtca 119  Q
    |||||||||||||| ||||||||||| |||||||||||||| ||||||||||  |||||||||||| ||| ||||||||||||||||| |||||||||||    
T  16896264 cctaaacgttttgagatactttcttcgaaccaactaccaccttccacacctactccattttgaattttaattatctccctccaccaagctgaacatgtca 16896165  T
Q  120 cgccaccctc 129  Q
     ||| |||||    
T  16896164 tgcccccctc 16896155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 19 - 219
Target Start/End: Complemental strand, 41691450 - 41691249
Alignment:
Q  19 acctaaacgttttgatatactttcttcaaaccaactaccaccctccacacctatgccattttgaattctaactatctccctccaccaagatgaacatgtc 118  Q
    |||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |||||||||||| | ||||||||||||||||||| ||| |  |||    
T  41691450 acctaaacgttttgttatactttcttcaaaccaactcccaccctccacacctataccattttgaatttttactatctccctccaccaagctgaccccgtc 41691351  T
Q  119 acgccaccctctcttaaccgatctctcttcgccccatagcgag-aggcaacaccttaaaccacaaactctccctgtccactaaacacctccaacaccatt 217  Q
    || ||||| || ||||| ||  |||| |   ||||||| |||| |  |||||||||| |||| || | |||||| |||||||||||||||||||||||||    
T  41691350 actccaccttcccttaatcgccctctatgttccccataacgagaatacaacaccttataccataagccctccctatccactaaacacctccaacaccatt 41691251  T
Q  218 ta 219  Q
    ||    
T  41691250 ta 41691249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 85; Significance: 1e-40; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 20 - 219
Target Start/End: Original strand, 4164490 - 4164690
Alignment:
Q  20 cctaaacgttttgatatactttcttcaaaccaactaccaccctccacacctatgccattttgaattctaactatctccctccaccaagatgaacatgtca 119  Q
    |||||||||||||| ||||||||||| |||||||||||||| ||||||||||  |||||||||||| ||| ||||||||||||||||| ||||| |||||    
T  4164490 cctaaacgttttgagatactttcttcgaaccaactaccaccttccacacctactccattttgaattttaattatctccctccaccaagctgaacctgtca 4164589  T
Q  120 cgccaccctctcttaaccgatctctcttcgccccatagcgagagg-caacaccttaaaccacaaactctccctgtccactaaacacctccaacaccattt 218  Q
     ||| |||||  | |||||| | |  | | ||||||| ||||||| || |||| ||||||| |||| |||||| ||||||| ||||||||||||||||||    
T  4164590 tgcccccctccttcaaccgaccaccttgctccccatatcgagaggacagcaccctaaaccataaaccctccctatccactagacacctccaacaccattt 4164689  T
Q  219 a 219  Q
    |    
T  4164690 a 4164690  T

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Target: chr7; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 41 - 219
Target Start/End: Original strand, 45459784 - 45459963
Alignment:
Q  41 tcttcaaaccaactaccaccctccacacctatgccattttgaattctaactatctccctccaccaagatgaacatgtcacgccaccctctcttaaccgat 140  Q
    ||||||||||||||||||||||||||||| || |||||||||||| ||||||||||||||||||| | ||| |  ||| | ||||| || || ||||||     
T  45459784 tcttcaaaccaactaccaccctccacaccaattccattttgaattttaactatctccctccaccatgctgaccccgtcgcaccaccttccctcaaccgac 45459883  T
Q  141 ctctcttcgccccatagcgag-aggcaacaccttaaaccacaaactctccctgtccactaaacacctccaacaccattta 219  Q
    |||| | | ||||||| |||| || |||||||||||||||||| | |||||| |||| ||||||||||||||||||||||    
T  45459884 ctctatgctccccataacgagaagacaacaccttaaaccacaagccctccctatccattaaacacctccaacaccattta 45459963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 20 - 219
Target Start/End: Original strand, 34206781 - 34206981
Alignment:
Q  20 cctaaacgttttgatatactttcttcaaaccaactaccaccctccacacctatgccattttgaattctaactatctccctccaccaagatgaacatgtca 119  Q
    |||||||||||||| ||||||||||| |||||||||||||| ||||||||||  |||||||||||| ||| |||||| ||| |||||| ||||| | |||    
T  34206781 cctaaacgttttgagatactttcttcgaaccaactaccaccttccacacctactccattttgaattttaattatctcactcaaccaagctgaacctatca 34206880  T
Q  120 cgccaccctctcttaaccgatctctcttcgccccatagcgagagg-caacaccttaaaccacaaactctccctgtccactaaacacctccaacaccattt 218  Q
     ||| |||||  | |||||| | |  | | | ||||| | ||||| ||||||| ||||||| |||| |||||| ||||||| ||||||||||||||||||    
T  34206881 tgcccccctccttcaaccgaccaccttgctcaccatatcaagaggacaacaccctaaaccataaaccctccctatccactagacacctccaacaccattt 34206980  T
Q  219 a 219  Q
    |    
T  34206981 a 34206981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 167 - 218
Target Start/End: Complemental strand, 45844891 - 45844840
Alignment:
Q  167 acaccttaaaccacaaactctccctgtccactaaacacctccaacaccattt 218  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  45844891 acaccttaaaccacaaactgtccctgtccactaaacacctccaacaccattt 45844840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 169 - 218
Target Start/End: Complemental strand, 28740473 - 28740424
Alignment:
Q  169 accttaaaccacaaactctccctgtccactaaacacctccaacaccattt 218  Q
    ||||||||||| || |||||||| || || ||||||||||||||||||||    
T  28740473 accttaaaccataacctctccctatcaaccaaacacctccaacaccattt 28740424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0674 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0674
Description:

Target: scaffold0674; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 165 - 218
Target Start/End: Complemental strand, 642 - 589
Alignment:
Q  165 caacaccttaaaccacaaactctccctgtccactaaacacctccaacaccattt 218  Q
    |||||||| |||||||||| | ||||| | ||||||||||||||||||||||||    
T  642 caacacctgaaaccacaaattgtccctattcactaaacacctccaacaccattt 589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 165 - 218
Target Start/End: Original strand, 20636897 - 20636950
Alignment:
Q  165 caacaccttaaaccacaaactctccctgtccactaaacacctccaacaccattt 218  Q
    |||||||| |||||||||| | ||||| | ||||||||||||||||||||||||    
T  20636897 caacacctgaaaccacaaattgtccctattcactaaacacctccaacaccattt 20636950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 219
Target Start/End: Complemental strand, 27336168 - 27336121
Alignment:
Q  172 ttaaaccacaaactctccctgtccactaaacacctccaacaccattta 219  Q
    |||||||||||||  ||| | |||||||||||||||||||||||||||    
T  27336168 ttaaaccacaaaccatccatatccactaaacacctccaacaccattta 27336121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 218
Target Start/End: Complemental strand, 18669758 - 18669705
Alignment:
Q  165 caacaccttaaaccacaaactctccctgtccactaaacacctccaacaccattt 218  Q
    ||||| ||||||||||||||  ||||| ||||| | ||||||||||||||||||    
T  18669758 caacagcttaaaccacaaaccttccctatccaccagacacctccaacaccattt 18669705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 215
Target Start/End: Original strand, 22584166 - 22584216
Alignment:
Q  165 caacaccttaaaccacaaactctccctgtccactaaacacctccaacacca 215  Q
    ||||||| ||||||||||||||||||| ||||| ||  |||||||||||||    
T  22584166 caacaccctaaaccacaaactctccctatccaccaacaacctccaacacca 22584216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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