View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17239_high_8 (Length: 521)
Name: NF17239_high_8
Description: NF17239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17239_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 394; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 1 - 503
Target Start/End: Original strand, 9231726 - 9232228
Alignment:
| Q |
1 |
atatggtggcaacctaatgataaatgattgacccatttataaaatttaaaaacataaaccaatcacaacattttctcatgagggcttgttttaaaaaatt |
100 |
Q |
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| T |
9231726 |
atatggtggcaacctaatgataaatgattgacccatttataaaattaaaaaacataaaccaatcacaacattttctcatgagggcttgttttaaaaaatt |
9231825 |
T |
|
| Q |
101 |
tcatannnnnnngaagacttgaatgatgaaaagacaagctcgattttcttgttcatcatttgtacaactacaaacattggtaaaaatatttgcttcaatt |
200 |
Q |
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| T |
9231826 |
tcatatttttttgaagacttgaatgatgaaaagacaagctcaattttcttgttcatcatttgtacaactacaaacattggtaaaaatatttgcttcaatt |
9231925 |
T |
|
| Q |
201 |
tttatcctattccatcaaaattgtctagctaagaatcaccaaccatgtccaacttcatcttgcggcaaaattcgcaacataacatatccttttcgtctca |
300 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
9231926 |
tttatcctattccatcaaaattgtctagctaagcatcaccaaccatgtccaacttcatcttgcggcaaaattcgcaacataacatatccatttcgtctca |
9232025 |
T |
|
| Q |
301 |
aaaccgatccaggccactgtggaaacacaaggtatgaattagattgcaacgaaaacggtccatcattaactctgttctcggggaaatactatgtacaaca |
400 |
Q |
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| T |
9232026 |
aaaccgatccaaatcactgcggagacacaaggtacgaattagattgcaacaaaaacggtccatcattaaccatgttctccgggaaatactatgtacaaca |
9232125 |
T |
|
| Q |
401 |
cattgattacaagagatttaaaatttcgttaagtgacgcgggtgcagtggaagacactaattgctcttttatcccacggtactttttatacgatcgaagt |
500 |
Q |
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| T |
9232126 |
cattgattacaagggatttaaaattcgattaagtgacgcgggtgcagtggaagatgctaattgctcttttatcccacggtactttttatatgatcaaagt |
9232225 |
T |
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| Q |
501 |
ttt |
503 |
Q |
| |
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||| |
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| T |
9232226 |
ttt |
9232228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 187 - 490
Target Start/End: Complemental strand, 9386733 - 9386430
Alignment:
| Q |
187 |
tatttgcttcaatttttatcctattccatcaaaattgtctagctaagaatcaccaaccatgtccaacttcatcttgcggcaaaattcgcaacataacata |
286 |
Q |
| |
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|||||||||||||| || || | | |||||||||||||| |||||| ||||||||||||| ||||| ||||| ||||||||||| |||||||||||| |
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| T |
9386733 |
tatttgcttcaattcttctcatttctcatcaaaattgtcttgctaagcatcaccaaccatgcccaacgtcatcatgcggcaaaatcaccaacataacata |
9386634 |
T |
|
| Q |
287 |
tccttttcgtctcaaaaccgatccaggccactgtggaaacacaaggtatgaattagattgcaacgaaaacggtccatcattaactctgttctcggggaaa |
386 |
Q |
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|| |||||||||||||| |||||| ||||||||| ||| ||||||||||||||||||||||||||| |||||||||||||| ||||||| |||||| |
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| T |
9386633 |
cccatttcgtctcaaaactgatccaaaccactgtggggacaaaaggtatgaattagattgcaacgaaaatggtccatcattaaccatgttctccgggaaa |
9386534 |
T |
|
| Q |
387 |
tactatgtacaacacattgattacaagagatttaaaatttcgttaagtgacgcgggtgcagtggaagacactaattgctcttttatcccacggtactttt |
486 |
Q |
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||||||||||||||||| ||||||||||| |||| |||| |||||||||||||||||||||||||| ||||||||||||| ||||| |||||||||| |
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| T |
9386533 |
tactatgtacaacacatagattacaagaggtttataattcgattaagtgacgcgggtgcagtggaagatgctaattgctctttcatcccgcggtactttt |
9386434 |
T |
|
| Q |
487 |
tata |
490 |
Q |
| |
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|||| |
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|
| T |
9386433 |
tata |
9386430 |
T |
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