View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17239_high_9 (Length: 502)
Name: NF17239_high_9
Description: NF17239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17239_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 348; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 5 - 364
Target Start/End: Complemental strand, 45395006 - 45394647
Alignment:
| Q |
5 |
ttatgtaaccatatgtgtttatttgttttgttttttctttgaaatgaactatgatagagaatatgattgtgcatggatgggttctaatacaaaattgagt |
104 |
Q |
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| T |
45395006 |
ttatgtaaccatatgtgtttttttgttttgttttttctttgaaatgaactatgatagagaatatgattgtgcatggatgggttctaatacaaaattgagt |
45394907 |
T |
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| Q |
105 |
aaaatcaccgttttagtttttcatattgtaggcatatataacaatttggtatctcaaagtaacaaaattataagatgataattagtcgaattgaaaacct |
204 |
Q |
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| T |
45394906 |
aaaatcaccgttttagtttttcatattgtaggcatatataacaatttggtatctcaaagtaacaaaattataagatgataattagtcgaattgaaaacct |
45394807 |
T |
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| Q |
205 |
caatcatatttgtcatttttattatgtcaatcaatcgttctccaaattattcagaagaacaatagcaattaagtatatttaatttcatatttcagataaa |
304 |
Q |
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| T |
45394806 |
caattatatttgtcatttttattatgtcaatcaatcgttctccaaattattcagaagaacaatagcaattaagtatatttaatttcatatttcagataaa |
45394707 |
T |
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| Q |
305 |
taaattgcttgaccctaccattcaagatatagatcggtgattcactccaactttctcctc |
364 |
Q |
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| T |
45394706 |
taaattgcttgaccctaccattcaagatatagatcggtgattcactcaaactttctcctc |
45394647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 417 - 490
Target Start/End: Complemental strand, 45394594 - 45394521
Alignment:
| Q |
417 |
accggtccccctaatatgtgctctcctaattgtgggaaaaaatcatctccatttacttgaaataaacggatatt |
490 |
Q |
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| T |
45394594 |
accggtccccctaatatgtgctctcctaattgtgggaaaaaatcatctccatttacttgaaataaatggatatt |
45394521 |
T |
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