View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17239_low_11 (Length: 485)

Name: NF17239_low_11
Description: NF17239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17239_low_11
NF17239_low_11
[»] chr4 (19 HSPs)
chr4 (18-475)||(39506839-39507301)
chr4 (146-200)||(3144652-3144706)
chr4 (146-200)||(20743278-20743332)
chr4 (150-220)||(49659502-49659573)
chr4 (146-260)||(24343512-24343632)
chr4 (99-192)||(34515882-34515975)
chr4 (194-260)||(53381530-53381596)
chr4 (147-187)||(7424676-7424716)
chr4 (148-192)||(31243556-31243600)
chr4 (209-260)||(19482747-19482798)
chr4 (194-261)||(23292925-23292991)
chr4 (189-247)||(3947714-3947771)
chr4 (146-216)||(16402195-16402265)
chr4 (146-200)||(32910556-32910610)
chr4 (194-260)||(34306744-34306809)
chr4 (217-262)||(25950470-25950515)
chr4 (148-193)||(50848310-50848355)
chr4 (147-198)||(30520438-30520490)
chr4 (148-200)||(53968553-53968605)
[»] chr8 (14 HSPs)
chr8 (148-260)||(39820436-39820547)
chr8 (135-240)||(1676706-1676811)
chr8 (146-203)||(35431137-35431194)
chr8 (149-248)||(31580079-31580178)
chr8 (147-197)||(9936820-9936870)
chr8 (148-198)||(13845241-13845291)
chr8 (146-260)||(30067968-30068082)
chr8 (149-247)||(12559053-12559157)
chr8 (151-188)||(26507450-26507487)
chr8 (188-247)||(44067574-44067633)
chr8 (146-200)||(13009493-13009547)
chr8 (210-260)||(29510233-29510283)
chr8 (148-192)||(28883886-28883930)
chr8 (148-200)||(40063958-40064010)
[»] chr5 (17 HSPs)
chr5 (140-264)||(7997102-7997226)
chr5 (148-200)||(43554528-43554580)
chr5 (150-200)||(39695999-39696049)
chr5 (147-260)||(32630675-32630788)
chr5 (148-193)||(19293430-19293475)
chr5 (130-198)||(25863193-25863261)
chr5 (150-193)||(29365015-29365058)
chr5 (210-260)||(2436980-2437030)
chr5 (150-247)||(26312778-26312875)
chr5 (147-234)||(2577145-2577233)
chr5 (149-194)||(15410454-15410499)
chr5 (146-183)||(18162060-18162097)
chr5 (149-198)||(31264446-31264495)
chr5 (146-198)||(18607099-18607151)
chr5 (147-191)||(21577117-21577161)
chr5 (212-260)||(38464313-38464361)
chr5 (146-190)||(42469226-42469270)
[»] chr3 (22 HSPs)
chr3 (140-256)||(25651969-25652091)
chr3 (162-246)||(12100290-12100374)
chr3 (146-221)||(15864838-15864913)
chr3 (146-247)||(24204994-24205095)
chr3 (147-260)||(25074795-25074914)
chr3 (148-198)||(25892467-25892517)
chr3 (148-260)||(3730108-3730217)
chr3 (149-260)||(55401083-55401194)
chr3 (149-192)||(1830351-1830394)
chr3 (138-200)||(27903629-27903691)
chr3 (146-243)||(25365467-25365564)
chr3 (140-200)||(12704657-12704717)
chr3 (209-260)||(40052380-40052431)
chr3 (197-260)||(52369843-52369906)
chr3 (146-200)||(52369780-52369834)
chr3 (149-245)||(10954960-10955056)
chr3 (147-200)||(14223853-14223906)
chr3 (147-192)||(20691325-20691370)
chr3 (147-243)||(21149073-21149169)
chr3 (147-192)||(40150579-40150624)
chr3 (149-260)||(40993275-40993387)
chr3 (161-260)||(7171521-7171620)
[»] chr7 (16 HSPs)
chr7 (147-247)||(12278841-12278941)
chr7 (146-221)||(23751905-23751980)
chr7 (148-200)||(29812664-29812716)
chr7 (146-200)||(23930224-23930278)
chr7 (151-262)||(7133210-7133327)
chr7 (196-261)||(17852056-17852120)
chr7 (147-196)||(32855360-32855409)
chr7 (188-260)||(5409771-5409842)
chr7 (149-260)||(15680817-15680928)
chr7 (146-197)||(4017797-4017848)
chr7 (146-197)||(22683758-22683809)
chr7 (188-262)||(32093952-32094026)
chr7 (212-259)||(32308202-32308249)
chr7 (146-200)||(17780084-17780138)
chr7 (194-247)||(32287416-32287468)
chr7 (149-260)||(598216-598327)
[»] chr1 (18 HSPs)
chr1 (136-260)||(22794018-22794142)
chr1 (146-200)||(42004947-42005001)
chr1 (139-198)||(6936402-6936461)
chr1 (146-199)||(6573994-6574047)
chr1 (147-245)||(19637774-19637872)
chr1 (149-263)||(46348320-46348434)
chr1 (147-212)||(29415754-29415819)
chr1 (188-247)||(1486657-1486715)
chr1 (209-260)||(15323236-15323287)
chr1 (147-204)||(7988446-7988504)
chr1 (171-260)||(9690213-9690303)
chr1 (209-247)||(18190061-18190099)
chr1 (149-262)||(22515825-22515938)
chr1 (207-248)||(23219615-23219656)
chr1 (149-192)||(12040690-12040734)
chr1 (151-183)||(28676183-28676215)
chr1 (148-192)||(39101190-39101234)
chr1 (146-197)||(48415728-48415780)
[»] chr6 (20 HSPs)
chr6 (146-200)||(6389748-6389802)
chr6 (147-200)||(19602181-19602234)
chr6 (146-200)||(34446570-34446624)
chr6 (147-200)||(17168463-17168516)
chr6 (146-234)||(12235485-12235573)
chr6 (209-260)||(8776908-8776959)
chr6 (150-192)||(2153895-2153937)
chr6 (136-201)||(12086344-12086409)
chr6 (149-260)||(34595142-34595253)
chr6 (194-261)||(28152152-28152218)
chr6 (149-192)||(30781302-30781345)
chr6 (146-192)||(6299517-6299563)
chr6 (146-192)||(6306327-6306373)
chr6 (151-260)||(13364645-13364754)
chr6 (146-200)||(26247431-26247485)
chr6 (136-189)||(7625117-7625170)
chr6 (154-194)||(4420185-4420225)
chr6 (211-247)||(8389421-8389457)
chr6 (211-247)||(31959220-31959256)
chr6 (148-192)||(34895042-34895086)
[»] chr2 (19 HSPs)
chr2 (146-204)||(12748689-12748747)
chr2 (147-200)||(23354652-23354705)
chr2 (148-200)||(25544488-25544540)
chr2 (147-247)||(24011042-24011148)
chr2 (149-262)||(18840951-18841064)
chr2 (147-260)||(34006930-34007044)
chr2 (147-192)||(23355003-23355048)
chr2 (136-186)||(8817470-8817520)
chr2 (147-197)||(10535762-10535812)
chr2 (148-186)||(22085011-22085049)
chr2 (194-260)||(27084323-27084388)
chr2 (146-200)||(30563414-30563468)
chr2 (194-260)||(37419808-37419873)
chr2 (147-197)||(38919212-38919262)
chr2 (151-200)||(11308004-11308053)
chr2 (147-200)||(19573984-19574037)
chr2 (148-192)||(4229416-4229460)
chr2 (212-260)||(19980746-19980794)
chr2 (147-187)||(31026701-31026741)
[»] scaffold0199 (1 HSPs)
scaffold0199 (135-240)||(1943-2048)
[»] scaffold0598 (1 HSPs)
scaffold0598 (146-200)||(8053-8107)
[»] scaffold0778 (1 HSPs)
scaffold0778 (147-188)||(4412-4453)
[»] scaffold0652 (1 HSPs)
scaffold0652 (210-247)||(415-452)
[»] scaffold0053 (1 HSPs)
scaffold0053 (149-245)||(8806-8902)
[»] scaffold0049 (1 HSPs)
scaffold0049 (151-192)||(56932-56973)
[»] scaffold0361 (1 HSPs)
scaffold0361 (149-260)||(14538-14646)


Alignment Details
Target: chr4 (Bit Score: 299; Significance: 1e-168; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 18 - 475
Target Start/End: Complemental strand, 39507301 - 39506839
Alignment:
Q  18 gatcctgtctagtttattgttactgcttactcagggatatatgtgtgatataaatcttaacgttgtttgttgactatgaaccacagacacaaacattaga 117  Q
    |||||||||||||||||||||||||||||||| || |||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  39507301 gatcctgtctagtttattgttactgcttactctggtatatatgtttgatataaatcttaacgttgtttgttgactatgaaccacatacacaaacattaga 39507202  T
Q  118 cacgacctgaatatcgatacgtcaacaaggataataatttaagaaaatgatataattaagtgtaatcataggtgttgtgtcggacactgatacgtgtccg 217  Q
    |||||| |||||| ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  39507201 cacgacttgaataccgatacgtcaataaggataataatttatgaaaatgatataattaagtgtaatcataggtgttatgtcggacactgatacgtgtccg 39507102  T
Q  218 acaccgagacacacctattccgaggagtgttactgcttcatagttttttgatataattaagacactaagattcatnnnnnnnttggacaacaagagacct 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||       ||||||||||  ||||||    
T  39507101 acaccgagacacacctattccgaggagtgttactgcttcatagttttttgatttaattaagacactaagattcataaaaaaattggacaaca--agacct 39507004  T
Q  318 cttgaatcaccttgttac-------tataatttgtcacacatgtnnnnnnncacattcgttttttattccatgacttagaatcattaatttgagtgnnnn 410  Q
    ||||||||||||||||||       |||||||||||||||||||       |||||||||||||||||||||||||||||||||| ||||||||||        
T  39507003 cttgaatcaccttgttactggtttatataatttgtcacacatgtaaaaaaacacattcgttttttattccatgacttagaatcataaatttgagtgtttt 39506904  T
Q  411 nnnnnnnnnaatcacatcaccacatgttcataaacatgtatgaaccgggcatagattcatctcac 475  Q
             ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  39506903 ttcatttttaatcacatcaccacatgttcataaacatgtatgaaccgggcatagattcatttcac 39506839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 146 - 200
Target Start/End: Complemental strand, 3144706 - 3144652
Alignment:
Q  146 ggataataatttaagaaaatgatataattaagtgtaatcataggtgttgtgtcgg 200  Q
    |||||||||||| |||||||||||||||| ||||||||||||||||| |||||||    
T  3144706 ggataataatttcagaaaatgatataatttagtgtaatcataggtgtcgtgtcgg 3144652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 146 - 200
Target Start/End: Complemental strand, 20743332 - 20743278
Alignment:
Q  146 ggataataatttaagaaaatgatataattaagtgtaatcataggtgttgtgtcgg 200  Q
    |||||||||||| ||||||||| |||||| |||||||||||||||||||||||||    
T  20743332 ggataataatttgagaaaatgacataattcagtgtaatcataggtgttgtgtcgg 20743278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 150 - 220
Target Start/End: Complemental strand, 49659573 - 49659502
Alignment:
Q  150 aataatttaagaaaatgatataattaagtgtaatcataggtgtt-gtgtcggacactgatacgtgtccgaca 220  Q
    |||||||| |||||||||||||||| ||||||||||||||| || ||||||||||| || ||||| ||||||    
T  49659573 aataatttgagaaaatgatataatttagtgtaatcataggttttggtgtcggacaccgacacgtgcccgaca 49659502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 146 - 260
Target Start/End: Original strand, 24343512 - 24343632
Alignment:
Q  146 ggataataatttaagaaaatgatataattaagtgtaatcataggtgttgtgtcg------gacactgatacgtgtccgacaccgagacacacctattccg 239  Q
    |||||||||||| ||||||| | |||||| |||||||| |||||||| ||||||      ||||| ||  |||||||||||||| ||||| ||||||| |    
T  24343512 ggataataatttgagaaaattacataattcagtgtaattataggtgtcgtgtcggtgtccgacaccgacgcgtgtccgacaccgggacacgcctattctg 24343611  T
Q  240 aggagtgttactgcttcatag 260  Q
    ||||||||   ||||||||||    
T  24343612 aggagtgtccgtgcttcatag 24343632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 99 - 192
Target Start/End: Complemental strand, 34515975 - 34515882
Alignment:
Q  99 cacagacacaaacattagacacgacctgaatatcgatacgtcaacaaggataataatttaagaaaatgatataattaagtgtaatcataggtgt 192  Q
    ||||||||||||||| |||||| ||  ||| |  || ||||| ||| ||||||||||| |||||||||| |||||| ||||||| |||||||||    
T  34515975 cacagacacaaacatcagacacaacacgaacactgacacgtcgacacggataataattcaagaaaatgacataattcagtgtaaacataggtgt 34515882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 194 - 260
Target Start/End: Complemental strand, 53381596 - 53381530
Alignment:
Q  194 gtgtcggacactgatacgtgtccgacaccgagacacacctattccgaggagtgttactgcttcatag 260  Q
    ||||||||||||||  ||| |||||||||| |||||||||| ||||||||||||   ||||||||||    
T  53381596 gtgtcggacactgacgcgtatccgacaccgggacacacctaatccgaggagtgtccgtgcttcatag 53381530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 147 - 187
Target Start/End: Original strand, 7424676 - 7424716
Alignment:
Q  147 gataataatttaagaaaatgatataattaagtgtaatcata 187  Q
    ||||||||||||||||||| |||||||| ||||||||||||    
T  7424676 gataataatttaagaaaataatataattgagtgtaatcata 7424716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 148 - 192
Target Start/End: Complemental strand, 31243600 - 31243556
Alignment:
Q  148 ataataatttaagaaaatgatataattaagtgtaatcataggtgt 192  Q
    |||||||||| ||||||||| |||||| |||||||||||||||||    
T  31243600 ataataatttgagaaaatgacataattcagtgtaatcataggtgt 31243556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 209 - 260
Target Start/End: Original strand, 19482747 - 19482798
Alignment:
Q  209 acgtgtccgacaccgagacacacctattccgaggagtgttactgcttcatag 260  Q
    ||||||||||||| | |||||||||| |||||||||||||  ||||||||||    
T  19482747 acgtgtccgacactgggacacacctaatccgaggagtgttcgtgcttcatag 19482798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 194 - 261
Target Start/End: Complemental strand, 23292991 - 23292925
Alignment:
Q  194 gtgtcggacactgatacgtgtccgacaccgagacacacctattccgaggagtgttactgcttcatagt 261  Q
    ||||||||||| || ||||||||||||||| ||||| |||| ||||||||||||   |||||||||||    
T  23292991 gtgtcggacac-gacacgtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcatagt 23292925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 189 - 247
Target Start/End: Complemental strand, 3947771 - 3947714
Alignment:
Q  189 gtgttgtgtcggacactgatacgtgtccgacaccgagacacacctattccgaggagtgt 247  Q
    |||| ||||||||||| || ||||||||||||||  |||||||||| ||||||||||||    
T  3947771 gtgtcgtgtcggacac-gacacgtgtccgacaccaggacacacctaatccgaggagtgt 3947714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 146 - 216
Target Start/End: Complemental strand, 16402265 - 16402195
Alignment:
Q  146 ggataataatttaagaaaatgatataattaagtgtaatcataggtgttgtgtcggacactgatacgtgtcc 216  Q
    |||||||||||| ||||||| | || ||  |||||||| |||| ||| |||||||||||||| ||||||||    
T  16402265 ggataataatttgagaaaataacatgatacagtgtaattatagctgtcgtgtcggacactgacacgtgtcc 16402195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 146 - 200
Target Start/End: Original strand, 32910556 - 32910610
Alignment:
Q  146 ggataataatttaagaaaatgatataattaagtgtaatcataggtgttgtgtcgg 200  Q
    |||||||||||| ||||||||| |||||| |||||||| || |||||| ||||||    
T  32910556 ggataataatttgagaaaatgacataattcagtgtaattatgggtgttatgtcgg 32910610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 194 - 260
Target Start/End: Complemental strand, 34306809 - 34306744
Alignment:
Q  194 gtgtcggacactgatacgtgtccgacaccgagacacacctattccgaggagtgttactgcttcatag 260  Q
    ||||||||||| || ||||||||||||||||||||| |||| || ||||| ||||  ||||||||||    
T  34306809 gtgtcggacac-gacacgtgtccgacaccgagacacgcctaatctgaggaatgttcgtgcttcatag 34306744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 217 - 262
Target Start/End: Complemental strand, 25950515 - 25950470
Alignment:
Q  217 gacaccgagacacacctattccgaggagtgttactgcttcatagtt 262  Q
    |||||||||||||||||| ||||||||||||   ||||||||||||    
T  25950515 gacaccgagacacacctaatccgaggagtgtccatgcttcatagtt 25950470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 148 - 193
Target Start/End: Complemental strand, 50848355 - 50848310
Alignment:
Q  148 ataataatttaagaaaatgatataattaagtgtaatcataggtgtt 193  Q
    |||||||||| | |||||||||||||| ||||||||| ||||||||    
T  50848355 ataataatttgaaaaaatgatataattcagtgtaatcgtaggtgtt 50848310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 147 - 198
Target Start/End: Complemental strand, 30520490 - 30520438
Alignment:
Q  147 gataataattt-aagaaaatgatataattaagtgtaatcataggtgttgtgtc 198  Q
    ||||||||||| || ||||||| |||||| ||||||||||||||||| |||||    
T  30520490 gataataatttgaaaaaaatgacataattcagtgtaatcataggtgtagtgtc 30520438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 148 - 200
Target Start/End: Original strand, 53968553 - 53968605
Alignment:
Q  148 ataataatttaagaaaatgatataattaagtgtaatcataggtgttgtgtcgg 200  Q
    |||||||||||||||||||| |||||| ||||  ||||||| ||| |||||||    
T  53968553 ataataatttaagaaaatgacataattcagtgatatcatagatgtcgtgtcgg 53968605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 3e-21; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 148 - 260
Target Start/End: Original strand, 39820436 - 39820547
Alignment:
Q  148 ataataatttaagaaaatgatataattaagtgtaatcataggtgttgtgtcggacactgatacgtgtccgacaccgagacacacctattccgaggagtgt 247  Q
    |||||||||| |||||||||||||||| ||||||||||||||||| ||||||||||| ||  ||||||||||| || ||||| |||| |||||| |||||    
T  39820436 ataataatttgagaaaatgatataatttagtgtaatcataggtgtcgtgtcggacaccgacgcgtgtccgaca-cgggacacgcctaatccgagaagtgt 39820534  T
Q  248 tactgcttcatag 260  Q
       ||||||||||    
T  39820535 ccgtgcttcatag 39820547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 135 - 240
Target Start/End: Original strand, 1676706 - 1676811
Alignment:
Q  135 tacgtcaacaaggataataatttaagaaaatgatataattaagtgtaatcataggtgttgtgtcggacactgatacgtgtccgacaccgagacacaccta 234  Q
    |||||| ||| ||||||||||||  |||||||| ||| || ||||||||||||||||| ||||||||||| || || |||| ||||||   |||||||||    
T  1676706 tacgtcgacacggataataatttgtgaaaatgacatattttagtgtaatcataggtgtcgtgtcggacaccgacacatgtctgacacctgcacacaccta 1676805  T
Q  235 ttccga 240  Q
     |||||    
T  1676806 atccga 1676811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 146 - 203
Target Start/End: Complemental strand, 35431194 - 35431137
Alignment:
Q  146 ggataataatttaagaaaatgatataattaagtgtaatcataggtgttgtgtcggaca 203  Q
    |||||||||||| ||||||||| ||| || ||||||||||||||||| ||||||||||    
T  35431194 ggataataatttgagaaaatgacatattttagtgtaatcataggtgtcgtgtcggaca 35431137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 149 - 248
Target Start/End: Complemental strand, 31580178 - 31580079
Alignment:
Q  149 taataatttaagaaaatgatataattaagtgtaatcataggtgttg-tgtcggacactgatacgtgtccgacaccgagacacacctattccgaggagtgt 247  Q
    ||||||||||||||||| | |||||| |||||||| |||||||| | |||||||| | || || ||| ||||||||| ||||||||| ||||||| ||||    
T  31580178 taataatttaagaaaatcacataattgagtgtaattataggtgtcgatgtcggacgc-gacacatgttcgacaccgaaacacacctaatccgaggggtgt 31580080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 147 - 197
Target Start/End: Original strand, 9936820 - 9936870
Alignment:
Q  147 gataataatttaagaaaatgatataattaagtgtaatcataggtgttgtgt 197  Q
    |||||||||||||||||||||||||||| | | |||||||| |||||||||    
T  9936820 gataataatttaagaaaatgatataattcaatataatcatatgtgttgtgt 9936870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 148 - 198
Target Start/End: Original strand, 13845241 - 13845291
Alignment:
Q  148 ataataatttaagaaaatgatataattaagtgtaatcataggtgttgtgtc 198  Q
    |||||||||| |||||||||||||||| || |||||||||||||| |||||    
T  13845241 ataataatttgagaaaatgatataatttagagtaatcataggtgtcgtgtc 13845291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 146 - 260
Target Start/End: Complemental strand, 30068082 - 30067968
Alignment:
Q  146 ggataataatttaagaaaatgatataattaagtgtaatcataggtgttgtgtcggacactgatacgtgtccgacaccgagacacacctattccgaggagt 245  Q
    |||||||||||| ||||||||| |||||| ||| ||||| ||||||  | |||||| || ||   ||||||||||| | |||||||||| ||||| ||||    
T  30068082 ggataataatttgagaaaatgacataattcagtataatcgtaggtgccgagtcggataccgacgtgtgtccgacactgggacacacctaatccgatgagt 30067983  T
Q  246 gttactgcttcatag 260  Q
    ||   ||||||||||    
T  30067982 gtccgtgcttcatag 30067968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 149 - 247
Target Start/End: Complemental strand, 12559157 - 12559053
Alignment:
Q  149 taataatttaagaaaatgatataattaagtgtaatcata------ggtgttgtgtcggacactgatacgtgtccgacaccgagacacacctattccgagg 242  Q
    ||||||||| |||||||||||||||| ||||||||||||      |||||  | |||||||| || |||||||||||| || |||||| ||| ||| |||    
T  12559157 taataatttgagaaaatgatataattcagtgtaatcatatgtattggtgtcatctcggacaccgacacgtgtccgacaacgggacacatctaatcccagg 12559058  T
Q  243 agtgt 247  Q
    |||||    
T  12559057 agtgt 12559053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 151 - 188
Target Start/End: Original strand, 26507450 - 26507487
Alignment:
Q  151 ataatttaagaaaatgatataattaagtgtaatcatag 188  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  26507450 ataatttaagaaaataatataattaagtgtaatcatag 26507487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 188 - 247
Target Start/End: Original strand, 44067574 - 44067633
Alignment:
Q  188 ggtgttgtgtcggacactgatacgtgtccgacaccgagacacacctattccgaggagtgt 247  Q
    ||||| ||||||||||||||| |||||||||||||  ||||| |||| | ||||||||||    
T  44067574 ggtgtcgtgtcggacactgatgcgtgtccgacaccaggacacgcctaattcgaggagtgt 44067633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 146 - 200
Target Start/End: Complemental strand, 13009547 - 13009493
Alignment:
Q  146 ggataataatttaagaaaatgatataattaagtgtaatcataggtgttgtgtcgg 200  Q
    |||||||||||| ||||||  |||||||| |||||||||||| |||| |||||||    
T  13009547 ggataataatttgagaaaacaatataatttagtgtaatcataagtgtcgtgtcgg 13009493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 210 - 260
Target Start/End: Complemental strand, 29510283 - 29510233
Alignment:
Q  210 cgtgtccgacaccgagacacacctattccgaggagtgttactgcttcatag 260  Q
    |||||||||||||| |||||||||| ||||||||||||   ||||||||||    
T  29510283 cgtgtccgacaccgggacacacctaatccgaggagtgtccgtgcttcatag 29510233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 148 - 192
Target Start/End: Complemental strand, 28883930 - 28883886
Alignment:
Q  148 ataataatttaagaaaatgatataattaagtgtaatcataggtgt 192  Q
    |||||||||| ||||||||| |||||| |||| ||||||||||||    
T  28883930 ataataatttgagaaaatgacataattcagtggaatcataggtgt 28883886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 148 - 200
Target Start/End: Original strand, 40063958 - 40064010
Alignment:
Q  148 ataataatttaagaaaatgatataattaagtgtaatcataggtgttgtgtcgg 200  Q
    |||||||||| ||||||||| |||||| | |||||||||||| || |||||||    
T  40063958 ataataatttgagaaaatgacataattcattgtaatcataggcgtcgtgtcgg 40064010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 3e-21; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 140 - 264
Target Start/End: Complemental strand, 7997226 - 7997102
Alignment:
Q  140 caacaaggataataatttaagaaaatgatataattaagtgtaatcataggtgttgtgtcggacactgatacgtgtccgacaccgagacacacctattccg 239  Q
    ||||| |||||||||||| |||||||||||||||  |||||||| ||| |||| ||||||||||||||  ||||||||||| |  |||||||||| | ||    
T  7997226 caacacggataataatttgagaaaatgatataatacagtgtaattataagtgtcgtgtcggacactgacgcgtgtccgacatcaggacacacctaattcg 7997127  T
Q  240 aggagtgttactgcttcatagtttt 264  Q
    || ||||||  |||||||| |||||    
T  7997126 agaagtgtttgtgcttcattgtttt 7997102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 148 - 200
Target Start/End: Original strand, 43554528 - 43554580
Alignment:
Q  148 ataataatttaagaaaatgatataattaagtgtaatcataggtgttgtgtcgg 200  Q
    |||||||||| |||||||||||||||| ||||||||||||||||| |||||||    
T  43554528 ataataatttgagaaaatgatataatttagtgtaatcataggtgtcgtgtcgg 43554580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 150 - 200
Target Start/End: Complemental strand, 39696049 - 39695999
Alignment:
Q  150 aataatttaagaaaatgatataattaagtgtaatcataggtgttgtgtcgg 200  Q
    |||||||| |||||||||||||||| ||||||||||||||||| |||||||    
T  39696049 aataatttgagaaaatgatataatttagtgtaatcataggtgtcgtgtcgg 39695999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 147 - 260
Target Start/End: Complemental strand, 32630788 - 32630675
Alignment:
Q  147 gataataatttaagaaaatgatataattaagtgtaatcataggtgtt-gtgtcggacactgatacgtgtccgacaccgagacacacctattccgaggagt 245  Q
    ||||||||||| ||||||| |||||||| | |||||| ||| ||||  |||||||| || || ||||||||||||  |||||||||||| | ||||||||    
T  32630788 gataataatttgagaaaattatataattcaatgtaattatatgtgtcagtgtcggatac-gacacgtgtccgacattgagacacacctaattcgaggagt 32630690  T
Q  246 gttactgcttcatag 260  Q
    ||   ||||||||||    
T  32630689 gtctatgcttcatag 32630675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 148 - 193
Target Start/End: Complemental strand, 19293475 - 19293430
Alignment:
Q  148 ataataatttaagaaaatgatataattaagtgtaatcataggtgtt 193  Q
    |||||||||||||||||| | ||||||||||||||||||| |||||    
T  19293475 ataataatttaagaaaataacataattaagtgtaatcatatgtgtt 19293430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 130 - 198
Target Start/End: Original strand, 25863193 - 25863261
Alignment:
Q  130 atcgatacgtcaacaaggataataatttaagaaaatgatataattaagtgtaatcataggtgttgtgtc 198  Q
    ||||| ||||| ||| | |||||||||| |||||||||||||||| |||||||| ||| |||| |||||    
T  25863193 atcgacacgtcgacatgtataataatttgagaaaatgatataattcagtgtaattataagtgtcgtgtc 25863261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 150 - 193
Target Start/End: Original strand, 29365015 - 29365058
Alignment:
Q  150 aataatttaagaaaatgatataattaagtgtaatcataggtgtt 193  Q
    ||||||||||||||||| ||||||||| |||||||| |||||||    
T  29365015 aataatttaagaaaatggtataattaaatgtaatcacaggtgtt 29365058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 210 - 260
Target Start/End: Original strand, 2436980 - 2437030
Alignment:
Q  210 cgtgtccgacaccgagacacacctattccgaggagtgttactgcttcatag 260  Q
    ||||||||||||| |||||| |||| |||||||||||||  ||||||||||    
T  2436980 cgtgtccgacaccaagacacgcctaatccgaggagtgttcgtgcttcatag 2437030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 150 - 247
Target Start/End: Original strand, 26312778 - 26312875
Alignment:
Q  150 aataatttaagaaaatgatataattaagtgtaatcataggtgttg-tgtcggacactgatacgtgtccgacaccgagacacacctattccgaggagtgt 247  Q
    |||||||| ||||||| |  ||||| |||||||| ||| || | | |||||||||| |||||||||| ||||||  |||||||||| ||||||||||||    
T  26312778 aataatttgagaaaatcaattaattcagtgtaattatatgtatcggtgtcggacac-gatacgtgtctgacaccaggacacacctaatccgaggagtgt 26312875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 147 - 234
Target Start/End: Complemental strand, 2577233 - 2577145
Alignment:
Q  147 gataataatttaagaaaatgatataattaagtgtaatcataggtgtt---gtgtcggacactgatacgtgtccgacaccgagacacaccta 234  Q
    ||||||||||| ||||||||| |||||| ||||||||||||  ||||   |||||||| || |||  |||||||||||| |||| ||||||    
T  2577233 gataataatttgagaaaatgacataatttagtgtaatcata--tgttccggtgtcggataccgatgtgtgtccgacaccaagactcaccta 2577145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 149 - 194
Target Start/End: Complemental strand, 15410499 - 15410454
Alignment:
Q  149 taataatttaagaaaatgatataattaagtgtaatcataggtgttg 194  Q
    ||||||||||||||||| |||| ||| |||||||||||| ||||||    
T  15410499 taataatttaagaaaattatatgattcagtgtaatcatatgtgttg 15410454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 146 - 183
Target Start/End: Original strand, 18162060 - 18162097
Alignment:
Q  146 ggataataatttaagaaaatgatataattaagtgtaat 183  Q
    |||||||||||||||||||||| |||||| ||||||||    
T  18162060 ggataataatttaagaaaatgacataattcagtgtaat 18162097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 149 - 198
Target Start/End: Original strand, 31264446 - 31264495
Alignment:
Q  149 taataatttaagaaaatgatataattaagtgtaatcataggtgttgtgtc 198  Q
    ||||||||| ||||||||| |||||| |||||||||||| |||| |||||    
T  31264446 taataatttgagaaaatgacataattcagtgtaatcataagtgtcgtgtc 31264495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 146 - 198
Target Start/End: Complemental strand, 18607151 - 18607099
Alignment:
Q  146 ggataataatttaagaaaatgatataattaagtgtaatcataggtgttgtgtc 198  Q
    |||||||||||| ||||||| | |||||| | ||||||||||||||| |||||    
T  18607151 ggataataatttgagaaaataacataattcaatgtaatcataggtgtcgtgtc 18607099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 147 - 191
Target Start/End: Complemental strand, 21577161 - 21577117
Alignment:
Q  147 gataataatttaagaaaatgatataattaagtgtaatcataggtg 191  Q
    ||||||||||| ||||||| | ||||||||||||||| |||||||    
T  21577161 gataataatttgagaaaataacataattaagtgtaataataggtg 21577117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 212 - 260
Target Start/End: Complemental strand, 38464361 - 38464313
Alignment:
Q  212 tgtccgacaccgagacacacctattccgaggagtgttactgcttcatag 260  Q
    |||||||||||| |||||||||| ||||||||||||   ||||||||||    
T  38464361 tgtccgacaccgggacacacctaatccgaggagtgtctgtgcttcatag 38464313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 146 - 190
Target Start/End: Original strand, 42469226 - 42469270
Alignment:
Q  146 ggataataatttaagaaaatgatataattaagtgtaatcataggt 190  Q
    |||||||||||| ||||||||| ||| || |||||||||||||||    
T  42469226 ggataataatttgagaaaatgacatattttagtgtaatcataggt 42469270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 140 - 256
Target Start/End: Complemental strand, 25652091 - 25651969
Alignment:
Q  140 caacaaggataataatttaagaaaatgatataattaagtgtaatcataggtgttgtgtc------ggacactgatacgtgtccgacaccgagacacacct 233  Q
    ||||| |||||||||||| |||||||||||||||| |||||| | ||||||||||||||      |||||| || |||||| ||||||||||||||||||    
T  25652091 caacacggataataatttgagaaaatgatataattcagtgtagttataggtgttgtgtcagtgttggacaccgacacgtgttcgacaccgagacacacct 25651992  T
Q  234 attccgaggagtgttactgcttc 256  Q
    | ||||| |||||| | ||||||    
T  25651991 aatccgaagagtgtcagtgcttc 25651969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 162 - 246
Target Start/End: Original strand, 12100290 - 12100374
Alignment:
Q  162 aaatgatataattaagtgtaatcataggtgttgtgtcggacactgatacgtgtccgacaccgagacacacctattccgaggagtg 246  Q
    ||||||||||||| |||||||| |||||||| ||||| |||||| |  |||||||||||||| |||||||||| |||||||||||    
T  12100290 aaatgatataattcagtgtaataataggtgtcgtgtctgacactaacgcgtgtccgacaccgggacacacctagtccgaggagtg 12100374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 146 - 221
Target Start/End: Original strand, 15864838 - 15864913
Alignment:
Q  146 ggataataatttaagaaaatgatataattaagtgtaatcataggtgttgtgtcggacactgatacgtgtccgacac 221  Q
    |||||||||||| | |||||||||||||| ||||||||||||||||| ||||||||||| || ||||||| |||||    
T  15864838 ggataataatttgaaaaaatgatataatttagtgtaatcataggtgtcgtgtcggacaccgacacgtgtctgacac 15864913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 146 - 247
Target Start/End: Complemental strand, 24205095 - 24204994
Alignment:
Q  146 ggataataatttaagaaaatgatataattaagtgtaatcataggtgttgtgtcggacactgatacgtgtccgacaccgagacacacctattccgaggagt 245  Q
    |||||||||||| ||||||||| |||||  |||||||| ||| |||| ||||||||||||||  |||||||||||||  ||||| |||| | ||||||||    
T  24205095 ggataataatttgagaaaatgacataatacagtgtaattataagtgtcgtgtcggacactgacgcgtgtccgacaccaggacacgcctaattcgaggagt 24204996  T
Q  246 gt 247  Q
    ||    
T  24204995 gt 24204994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 147 - 260
Target Start/End: Original strand, 25074795 - 25074914
Alignment:
Q  147 gataataatttaagaaaatgatataattaagtgtaatcataggtgttgtgtcg------gacactgatacgtgtccgacaccgagacacacctattccga 240  Q
    ||||||||||| ||||||||| |||||| |||||||||||||| |||||||||      |||||  |  |||||||||||| | |||||||||| |||||    
T  25074795 gataataatttgagaaaatgacataattgagtgtaatcataggcgttgtgtcggtgtctgacaccaacgcgtgtccgacactgggacacacctaatccga 25074894  T
Q  241 ggagtgttactgcttcatag 260  Q
    ||||||||  ||||||||||    
T  25074895 ggagtgttcgtgcttcatag 25074914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 148 - 198
Target Start/End: Original strand, 25892467 - 25892517
Alignment:
Q  148 ataataatttaagaaaatgatataattaagtgtaatcataggtgttgtgtc 198  Q
    ||||||||||||||||||||||||||| ||||||||||||||||| |||||    
T  25892467 ataataatttaagaaaatgatataattcagtgtaatcataggtgtcgtgtc 25892517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 148 - 260
Target Start/End: Complemental strand, 3730217 - 3730108
Alignment:
Q  148 ataataatttaagaaaatgatataattaagtgtaatcataggtgttgtgtcggacactgatacgtgtccgacaccgagacacacctattccgaggagtgt 247  Q
    |||||||||| ||| ||||| |||||| ||||||||||||||||| ||||| |||||  || | ||||   ||||| |||||||||| ||||||||||||    
T  3730217 ataataatttgagataatgacataattcagtgtaatcataggtgtcgtgtctgacaccaatgcatgtc---caccgggacacacctaatccgaggagtgt 3730121  T
Q  248 tactgcttcatag 260  Q
       ||||||||||    
T  3730120 ccatgcttcatag 3730108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 149 - 260
Target Start/End: Original strand, 55401083 - 55401194
Alignment:
Q  149 taataatttaagaaaatgatataattaagtgtaatcataggtgttg-tgtcggacactgatacgtgtccgacaccgagacacacctattccgaggagtgt 247  Q
    ||||||||| | ||||| | |||||| |||||||| | | |||| | |||||||||| || ||||||||||||||||||||| |||| ||||||||||||    
T  55401083 taataatttgaaaaaatcacataatttagtgtaattacaagtgtcggtgtcggacac-gacacgtgtccgacaccgagacacgcctaatccgaggagtgt 55401181  T
Q  248 tactgcttcatag 260  Q
       ||||||||||    
T  55401182 ccgtgcttcatag 55401194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 149 - 192
Target Start/End: Original strand, 1830351 - 1830394
Alignment:
Q  149 taataatttaagaaaatgatataattaagtgtaatcataggtgt 192  Q
    ||||||||||||||||||| |||||| |||||||||||||||||    
T  1830351 taataatttaagaaaatgacataattcagtgtaatcataggtgt 1830394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 138 - 200
Target Start/End: Original strand, 27903629 - 27903691
Alignment:
Q  138 gtcaacaaggataataatttaagaaaatgatataattaagtgtaatcataggtgttgtgtcgg 200  Q
    |||||||  ||||||||||| |||||| ||||||||| | |||||||||| ||||||||||||    
T  27903629 gtcaacacagataataatttgagaaaacgatataatttaatgtaatcataagtgttgtgtcgg 27903691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 146 - 243
Target Start/End: Original strand, 25365467 - 25365564
Alignment:
Q  146 ggataataatttaagaaaatgatataattaagtgtaatcataggtgttgtgtcggacactgatacgtgtccgacaccgagacacacctattccgagga 243  Q
    |||||||||||| |||| |||| ||||||  ||||||||||| |||| ||||||||||| |||  |||| |||||||  ||||| |||| || |||||    
T  25365467 ggataataatttgagaatatgacataattcggtgtaatcataagtgtcgtgtcggacaccgatgtgtgttcgacaccaggacacgcctaatctgagga 25365564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 140 - 200
Target Start/End: Complemental strand, 12704717 - 12704657
Alignment:
Q  140 caacaaggataataatttaagaaaatgatataattaagtgtaatcataggtgttgtgtcgg 200  Q
    ||||| |||||||||||| | ||||||| |||||| | ||||||||||||||| |||||||    
T  12704717 caacacggataataatttgaaaaaatgacataattcaatgtaatcataggtgtcgtgtcgg 12704657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 209 - 260
Target Start/End: Original strand, 40052380 - 40052431
Alignment:
Q  209 acgtgtccgacaccgagacacacctattccgaggagtgttactgcttcatag 260  Q
    ||||||||||||||| ||||| |||| |||||||||||||  ||||||||||    
T  40052380 acgtgtccgacaccgggacacgcctaatccgaggagtgttcgtgcttcatag 40052431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 197 - 260
Target Start/End: Original strand, 52369843 - 52369906
Alignment:
Q  197 tcggacactgatacgtgtccgacaccgagacacacctattccgaggagtgttactgcttcatag 260  Q
    |||||||| ||  ||||||| |||||| |||||||||||||||||||||||   ||||||||||    
T  52369843 tcggacaccgacgcgtgtccaacaccgggacacacctattccgaggagtgtccgtgcttcatag 52369906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 146 - 200
Target Start/End: Original strand, 52369780 - 52369834
Alignment:
Q  146 ggataataatttaagaaaatgatataattaagtgtaatcataggtgttgtgtcgg 200  Q
    |||||||||||| ||||||| | |||||| | ||||||||||||||| |||||||    
T  52369780 ggataataatttgagaaaattacataattcaatgtaatcataggtgtcgtgtcgg 52369834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 149 - 245
Target Start/End: Original strand, 10954960 - 10955056
Alignment:
Q  149 taataatttaagaaaatgatataattaagtgtaatcataggtgttg-tgtcggacactgatacgtgtccgacaccgagacacacctattccgaggagt 245  Q
    ||||||||| | ||||| | |||||| |||||||||| | |||| | |||||||||| || ||||||||||||| | ||||| |||| ||||||||||    
T  10954960 taataatttgaaaaaatcacataattcagtgtaatcacaagtgtcggtgtcggacac-gacacgtgtccgacactgggacacgcctaatccgaggagt 10955056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 147 - 200
Target Start/End: Complemental strand, 14223906 - 14223853
Alignment:
Q  147 gataataatttaagaaaatgatataattaagtgtaatcataggtgttgtgtcgg 200  Q
    ||||||||||| |||||| ||||||||| |||||| ||||| |||| |||||||    
T  14223906 gataataatttgagaaaacgatataatttagtgtattcataagtgtcgtgtcgg 14223853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 147 - 192
Target Start/End: Original strand, 20691325 - 20691370
Alignment:
Q  147 gataataatttaagaaaatgatataattaagtgtaatcataggtgt 192  Q
    ||||||||||| ||||||||| |||||| |||||||||||| ||||    
T  20691325 gataataatttgagaaaatgacataattcagtgtaatcatatgtgt 20691370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 147 - 243
Target Start/End: Original strand, 21149073 - 21149169
Alignment:
Q  147 gataataatttaagaaaatgatataattaagtgtaatcataggtgttg-tgtcggacactgatacgtgtccgacaccgagacacacctattccgagga 243  Q
    ||||||||||| ||||||||| |||||| |||||||||| || ||| | ||||||||||  |   ||||| |||||||| ||||||||| ||||||||    
T  21149073 gataataatttgagaaaatgacataattcagtgtaatcaaagatgtcgttgtcggacaccaacgtgtgtctgacaccga-acacacctaatccgagga 21149169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 147 - 192
Target Start/End: Complemental strand, 40150624 - 40150579
Alignment:
Q  147 gataataatttaagaaaatgatataattaagtgtaatcataggtgt 192  Q
    ||||||||||| |||||||||||||||| | |||||||||| ||||    
T  40150624 gataataatttgagaaaatgatataattcaatgtaatcatatgtgt 40150579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 149 - 260
Target Start/End: Complemental strand, 40993387 - 40993275
Alignment:
Q  149 taataatttaagaaaa-tgatataattaagtgtaatcataggtgttg-tgtcggacactgatacgtgtccgacaccgagacacacctattccgaggagtg 246  Q
    ||||||||||| |||| | | |||||| |||||||| ||| |||| | |||||||||| || || |||||||||||| ||||| |||| |||||||||||    
T  40993387 taataatttaaaaaaaatcacataattcagtgtaattatatgtgtcggtgtcggacac-gacacatgtccgacaccgggacacgcctaatccgaggagtg 40993289  T
Q  247 ttactgcttcatag 260  Q
    |   ||||||||||    
T  40993288 tccatgcttcatag 40993275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 161 - 260
Target Start/End: Original strand, 7171521 - 7171620
Alignment:
Q  161 aaaatgatataattaagtgtaatcataggtgttg-tgtcggacactgatacgtgtccgacaccgagacacacctattccgaggagtgttactgcttcata 259  Q
    ||||| ||||||||  ||||||| | | |||||| |||||||||| || ||||||||||||||| ||||| |||| ||| ||||||||   |||||||||    
T  7171521 aaaatcatataattcggtgtaattacaagtgttggtgtcggacac-gacacgtgtccgacaccgcgacacgcctaatccaaggagtgtatatgcttcata 7171619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 8e-19; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 147 - 247
Target Start/End: Original strand, 12278841 - 12278941
Alignment:
Q  147 gataataatttaagaaaatgatataattaagtgtaatcataggtgttgtgtcggacactgatacgtgtccgacaccgagacacacctattccgaggagtg 246  Q
    ||||||||||||||||||||| |||||| |||||||| ||| |||| |||||||||||  |  |||||| ||||||| |||||||||| ||| |||||||    
T  12278841 gataataatttaagaaaatgacataattcagtgtaattatatgtgtcgtgtcggacaccaacgcgtgtctgacaccgggacacacctaatcctaggagtg 12278940  T
Q  247 t 247  Q
    |    
T  12278941 t 12278941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 146 - 221
Target Start/End: Original strand, 23751905 - 23751980
Alignment:
Q  146 ggataataatttaagaaaatgatataattaagtgtaatcataggtgttgtgtcggacactgatacgtgtccgacac 221  Q
    |||||||||||| | |||||||||||||| ||||||||||||||||| ||||||||||| ||  |||||| |||||    
T  23751905 ggataataatttgataaaatgatataatttagtgtaatcataggtgtcgtgtcggacaccgacgcgtgtcagacac 23751980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 148 - 200
Target Start/End: Complemental strand, 29812716 - 29812664
Alignment:
Q  148 ataataatttaagaaaatgatataattaagtgtaatcataggtgttgtgtcgg 200  Q
    |||||||||| |||||||||||||||| ||||||||||||||||| |||||||    
T  29812716 ataataatttgagaaaatgatataatttagtgtaatcataggtgtcgtgtcgg 29812664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 146 - 200
Target Start/End: Original strand, 23930224 - 23930278
Alignment:
Q  146 ggataataatttaagaaaatgatataattaagtgtaatcataggtgttgtgtcgg 200  Q
    ||||| |||||| ||||||||| |||||| |||||||||||||||||||||||||    
T  23930224 ggatagtaatttgagaaaatgacataattcagtgtaatcataggtgttgtgtcgg 23930278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 151 - 262
Target Start/End: Complemental strand, 7133327 - 7133210
Alignment:
Q  151 ataatttaagaaaatgatataattaagtgtaatcataggtgtt------gtgtcggacactgatacgtgtccgacaccgagacacacctattccgaggag 244  Q
    ||||||| ||||||||| |||||| |||||||||||||||| |      ||||||||||| ||  |||||||||||| | |||||||||| || ||||||    
T  7133327 ataatttgagaaaatgacataattcagtgtaatcataggtggtgtgtcggtgtcggacaccgacgcgtgtccgacactgggacacacctaatctgaggag 7133228  T
Q  245 tgttactgcttcatagtt 262  Q
     ||   ||||||||||||    
T  7133227 cgtccgtgcttcatagtt 7133210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 196 - 261
Target Start/End: Original strand, 17852056 - 17852120
Alignment:
Q  196 gtcggacactgatacgtgtccgacaccgagacacacctattccgaggagtgttactgcttcatagt 261  Q
    |||||||| ||| |||||||||||||||||||||||||| | ||||||||||   |||||||||||    
T  17852056 gtcggaca-tgacacgtgtccgacaccgagacacacctaattcgaggagtgtccgtgcttcatagt 17852120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 147 - 196
Target Start/End: Original strand, 32855360 - 32855409
Alignment:
Q  147 gataataatttaagaaaatgatataattaagtgtaatcataggtgttgtg 196  Q
    |||||||||||||||||||||| ||||| | |||||||||| ||||||||    
T  32855360 gataataatttaagaaaatgatttaattgaatgtaatcatatgtgttgtg 32855409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 188 - 260
Target Start/End: Complemental strand, 5409842 - 5409771
Alignment:
Q  188 ggtgttgtgtcggacactgatacgtgtccgacaccgagacacacctattccgaggagtgttactgcttcatag 260  Q
    ||||| ||||||||||| || ||||||||||||||| ||||| |||| ||||||||||||   ||||||||||    
T  5409842 ggtgtcgtgtcggacac-gacacgtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcatag 5409771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 149 - 260
Target Start/End: Original strand, 15680817 - 15680928
Alignment:
Q  149 taataatttaagaaaatgatataattaagtgtaatcataggtgttg-tgtcggacactgatacgtgtccgacaccgagacacacctattccgaggagtgt 247  Q
    |||||||| || ||||| | |||||| |||||||| ||| |||| | |||||||||| || |||||||||||||||||||||  ||| | ||||||||||    
T  15680817 taataattaaaaaaaatcacataatttagtgtaattataagtgtcggtgtcggacac-gacacgtgtccgacaccgagacacgtctaattcgaggagtgt 15680915  T
Q  248 tactgcttcatag 260  Q
       ||||||||||    
T  15680916 ccgtgcttcatag 15680928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 146 - 197
Target Start/End: Complemental strand, 4017848 - 4017797
Alignment:
Q  146 ggataataatttaagaaaatgatataattaagtgtaatcataggtgttgtgt 197  Q
    |||||||||||| |||||| ||||||||| |||||||||||| |||| ||||    
T  4017848 ggataataatttgagaaaacgatataatttagtgtaatcataagtgtcgtgt 4017797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 146 - 197
Target Start/End: Complemental strand, 22683809 - 22683758
Alignment:
Q  146 ggataataatttaagaaaatgatataattaagtgtaatcataggtgttgtgt 197  Q
    |||||||||||| |||| ||||||||||| |||| |||||||||||| ||||    
T  22683809 ggataataatttgagaatatgatataattcagtgcaatcataggtgtcgtgt 22683758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 188 - 262
Target Start/End: Complemental strand, 32094026 - 32093952
Alignment:
Q  188 ggtgttgtgtcggacactgatacgtgtccgacaccgag-acacacctattccgaggagtgttactgcttcatagtt 262  Q
    ||||| ||||||||||| || ||||||||||||||| | |||| |||| |||||||||||||  ||||||||||||    
T  32094026 ggtgtcgtgtcggacac-gacacgtgtccgacaccggggacacgcctaatccgaggagtgttcgtgcttcatagtt 32093952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 212 - 259
Target Start/End: Original strand, 32308202 - 32308249
Alignment:
Q  212 tgtccgacaccgagacacacctattccgaggagtgttactgcttcata 259  Q
    ||||||||||||||||||| ||| |||||||||||||  |||||||||    
T  32308202 tgtccgacaccgagacacagctaatccgaggagtgttcatgcttcata 32308249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 146 - 200
Target Start/End: Complemental strand, 17780138 - 17780084
Alignment:
Q  146 ggataataatttaagaaaatgatataattaagtgtaatcataggtgttgtgtcgg 200  Q
    |||||||||||||||||||||| ||||||   |||||| |||||||| |||||||    
T  17780138 ggataataatttaagaaaatgacataattctatgtaataataggtgtcgtgtcgg 17780084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 194 - 247
Target Start/End: Complemental strand, 32287468 - 32287416
Alignment:
Q  194 gtgtcggacactgatacgtgtccgacaccgagacacacctattccgaggagtgt 247  Q
    |||||||||| ||| | ||||||||||||| |||||||||| ||||||||||||    
T  32287468 gtgtcggaca-tgacaagtgtccgacaccgggacacacctaatccgaggagtgt 32287416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 149 - 260
Target Start/End: Original strand, 598216 - 598327
Alignment:
Q  149 taataatttaagaaaatgatataattaagtgtaatcataggtgttg-tgtcggacactgatacgtgtccgacaccgagacacacctattccgaggagtgt 247  Q
    ||||||||||||||||| |  ||||||| ||||||  || |||| | |||| ||||| || ||||||||||||||| ||||| |||| |||||| |||||    
T  598216 taataatttaagaaaatcacgtaattaaatgtaattgtaagtgtcggtgtcagacac-gacacgtgtccgacaccgggacacgcctaatccgagaagtgt 598314  T
Q  248 tactgcttcatag 260  Q
       ||||||||||    
T  598315 ccgtgcttcatag 598327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 8e-19; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 136 - 260
Target Start/End: Complemental strand, 22794142 - 22794018
Alignment:
Q  136 acgtcaacaaggataataatttaagaaaatgatataattaagtgtaatcataggtgttgtgtcggacactgatacgtgtccgacaccgagacacacctat 235  Q
    ||||||||| |||||||||||| | ||||||| |||||  |||||||| |||||||| ||||| ||||||||  | |||||||| ||| ||||||||||     
T  22794142 acgtcaacacggataataatttgaaaaaatgacataatacagtgtaattataggtgtcgtgtccgacactgacgcatgtccgactccgggacacacctaa 22794043  T
Q  236 tccgaggagtgttactgcttcatag 260  Q
    | ||||||||||   ||||||||||    
T  22794042 ttcgaggagtgtacgtgcttcatag 22794018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 146 - 200
Target Start/End: Complemental strand, 42005001 - 42004947
Alignment:
Q  146 ggataataatttaagaaaatgatataattaagtgtaatcataggtgttgtgtcgg 200  Q
    |||||||||||| ||||||||| |||||| |||||||||||||||||||||||||    
T  42005001 ggataataatttgagaaaatgacataatttagtgtaatcataggtgttgtgtcgg 42004947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 139 - 198
Target Start/End: Complemental strand, 6936461 - 6936402
Alignment:
Q  139 tcaacaaggataataatttaagaaaatgatataattaagtgtaatcataggtgttgtgtc 198  Q
    |||||| |||||||||| | ||||||||| |||||||||||||||||||||||| |||||    
T  6936461 tcaacacggataataatctgagaaaatgacataattaagtgtaatcataggtgtcgtgtc 6936402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 146 - 199
Target Start/End: Original strand, 6573994 - 6574047
Alignment:
Q  146 ggataataatttaagaaaatgatataattaagtgtaatcataggtgttgtgtcg 199  Q
    |||| ||||||| ||| |||||||||||| ||||||||||||||||||||||||    
T  6573994 ggatgataatttgagacaatgatataatttagtgtaatcataggtgttgtgtcg 6574047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 147 - 245
Target Start/End: Original strand, 19637774 - 19637872
Alignment:
Q  147 gataataatttaagaaaatgatataattaagtgtaatcataggtgt-tgtgtcggacactgatacgtgtccgacaccgagacacacctattccgaggagt 245  Q
    ||||||||||||||||||||| || ||| | |||||||||| ||||  ||||||||||| ||||| | |||||||||| ||| | |||| ||||||||||    
T  19637774 gataataatttaagaaaatgacattattcaatgtaatcatatgtgtcggtgtcggacac-gatacatatccgacaccgggacgcccctaatccgaggagt 19637872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 149 - 263
Target Start/End: Complemental strand, 46348434 - 46348320
Alignment:
Q  149 taataatttaagaaaatgatataattaagtgtaatcataggtgttg-tgtcggacactgatacgtgtccgacaccgagacacacctattccgaggagtgt 247  Q
    ||||||||| | ||||| |||||||| |||||||| | | |||| | |||||||||| || ||||||||||||||||||||| |||  ||||||| ||||    
T  46348434 taataatttgaaaaaatcatataatttagtgtaattacaagtgtcggtgtcggacac-gacacgtgtccgacaccgagacacgcctgatccgaggtgtgt 46348336  T
Q  248 tactgcttcatagttt 263  Q
       |||||||||||||    
T  46348335 ccgtgcttcatagttt 46348320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 147 - 212
Target Start/End: Original strand, 29415754 - 29415819
Alignment:
Q  147 gataataatttaagaaaatgatataattaagtgtaatcataggtgttgtgtcggacactgatacgt 212  Q
    ||||||||||||||||||||| |||||| ||  |||||| | |||||||||| |||||||| ||||    
T  29415754 gataataatttaagaaaatgacataattcagcataatcacatgtgttgtgtcagacactgacacgt 29415819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 188 - 247
Target Start/End: Complemental strand, 1486715 - 1486657
Alignment:
Q  188 ggtgttgtgtcggacactgatacgtgtccgacaccgagacacacctattccgaggagtgt 247  Q
    ||||| ||||||||||| || ||||||||||||||| ||||| |||| ||||||||||||    
T  1486715 ggtgtcgtgtcggacac-gacacgtgtccgacaccgggacacgcctaatccgaggagtgt 1486657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 209 - 260
Target Start/End: Original strand, 15323236 - 15323287
Alignment:
Q  209 acgtgtccgacaccgagacacacctattccgaggagtgttactgcttcatag 260  Q
    |||||||||||||||| ||||||||| |||||||||||| | || |||||||    
T  15323236 acgtgtccgacaccgaaacacacctaatccgaggagtgtcagtgtttcatag 15323287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 147 - 204
Target Start/End: Complemental strand, 7988504 - 7988446
Alignment:
Q  147 gataataatttaagaaaatgatataattaagtgtaatcataggtgtt-gtgtcggacac 204  Q
    ||||||||||||||||| ||| |||||| | |||||||||| ||||| |||||||||||    
T  7988504 gataataatttaagaaagtgacataattcaatgtaatcataagtgttggtgtcggacac 7988446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 171 - 260
Target Start/End: Complemental strand, 9690303 - 9690213
Alignment:
Q  171 aattaagtgtaatcataggtgttgt-gtcggacactgatacgtgtccgacaccgagacacacctattccgaggagtgttactgcttcatag 260  Q
    |||| |||||||||||| |||| |  ||||| |||||| ||||||||||||||| ||||| |||| ||||  |||||||  ||||||||||    
T  9690303 aattcagtgtaatcatatgtgtcggcgtcggccactgacacgtgtccgacaccgggacacgcctaatccggagagtgtttgtgcttcatag 9690213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 209 - 247
Target Start/End: Complemental strand, 18190099 - 18190061
Alignment:
Q  209 acgtgtccgacaccgagacacacctattccgaggagtgt 247  Q
    ||||||||||||||| |||||||||| ||||||||||||    
T  18190099 acgtgtccgacaccgggacacacctaatccgaggagtgt 18190061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 149 - 262
Target Start/End: Complemental strand, 22515938 - 22515825
Alignment:
Q  149 taataatttaagaaaatgatataattaagtgtaatcataggtgttg-tgtcggacactgatacgtgtccgacaccgagacacacctattccgaggagtgt 247  Q
    ||||||||| | ||||| | |||||| |||||||| | | |||| | |||||||||| || || | |||||||||||||||| |||| ||||||||||||    
T  22515938 taataatttgaaaaaatcacataatttagtgtaattacaagtgtcggtgtcggacac-gacacatatccgacaccgagacacgcctaatccgaggagtgt 22515840  T
Q  248 tactgcttcatagtt 262  Q
       ||||||||||||    
T  22515839 ccgtgcttcatagtt 22515825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 207 - 248
Target Start/End: Complemental strand, 23219656 - 23219615
Alignment:
Q  207 atacgtgtccgacaccgagacacacctattccgaggagtgtt 248  Q
    ||||||||||||||||| |||||||||| |||||| ||||||    
T  23219656 atacgtgtccgacaccgtgacacacctaatccgagaagtgtt 23219615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 149 - 192
Target Start/End: Complemental strand, 12040734 - 12040690
Alignment:
Q  149 taataatttaagaaaatgatataa-ttaagtgtaatcataggtgt 192  Q
    |||||||||||||||||||||||| || ||| |||||||||||||    
T  12040734 taataatttaagaaaatgatataatttcagtataatcataggtgt 12040690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 151 - 183
Target Start/End: Complemental strand, 28676215 - 28676183
Alignment:
Q  151 ataatttaagaaaatgatataattaagtgtaat 183  Q
    ||||||||||||||| |||||||||||||||||    
T  28676215 ataatttaagaaaataatataattaagtgtaat 28676183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 148 - 192
Target Start/End: Complemental strand, 39101234 - 39101190
Alignment:
Q  148 ataataatttaagaaaatgatataattaagtgtaatcataggtgt 192  Q
    |||||||||| ||||||| | ||||||||||||||| ||||||||    
T  39101234 ataataatttgagaaaataacataattaagtgtaattataggtgt 39101190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 146 - 197
Target Start/End: Complemental strand, 48415780 - 48415728
Alignment:
Q  146 ggataataattt-aagaaaatgatataattaagtgtaatcataggtgttgtgt 197  Q
    |||||||||||| || |||||||||||||| ||||||||||||| ||| ||||    
T  48415780 ggataataattttaaaaaaatgatataatttagtgtaatcatagatgtcgtgt 48415728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 146 - 200
Target Start/End: Original strand, 6389748 - 6389802
Alignment:
Q  146 ggataataatttaagaaaatgatataattaagtgtaatcataggtgttgtgtcgg 200  Q
    |||||||||||| |||||||||||||||| ||||||||||||||||| |||||||    
T  6389748 ggataataatttgagaaaatgatataatttagtgtaatcataggtgtcgtgtcgg 6389802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 147 - 200
Target Start/End: Complemental strand, 19602234 - 19602181
Alignment:
Q  147 gataataatttaagaaaatgatataattaagtgtaatcataggtgttgtgtcgg 200  Q
    ||||||||||| |||||||||||||||| ||||||||||||||| |||||||||    
T  19602234 gataataatttgagaaaatgatataattcagtgtaatcataggtattgtgtcgg 19602181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 146 - 200
Target Start/End: Original strand, 34446570 - 34446624
Alignment:
Q  146 ggataataatttaagaaaatgatataattaagtgtaatcataggtgttgtgtcgg 200  Q
    |||||||||||| ||||||||| |||||| ||||||||||||||||| |||||||    
T  34446570 ggataataatttgagaaaatgacataattcagtgtaatcataggtgtcgtgtcgg 34446624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 147 - 200
Target Start/End: Complemental strand, 17168516 - 17168463
Alignment:
Q  147 gataataatttaagaaaatgatataattaagtgtaatcataggtgttgtgtcgg 200  Q
    ||||||||||| |||||||||||||||| |||||||| |||||||| |||||||    
T  17168516 gataataatttgagaaaatgatataatttagtgtaataataggtgtcgtgtcgg 17168463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 146 - 234
Target Start/End: Complemental strand, 12235573 - 12235485
Alignment:
Q  146 ggataataatttaagaaaatgatataattaagtgtaatcataggtgttgtgtcggacactgatacgtgtccgacaccgagacacaccta 234  Q
    |||||||||||  ||||||||| |||||| ||||||||||||||||| ||||| ||||| ||   ||||||| ||||| ||||| ||||    
T  12235573 ggataataattagagaaaatgacataattcagtgtaatcataggtgtcgtgtccgacaccgacgtgtgtccggcaccgggacaccccta 12235485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 209 - 260
Target Start/End: Complemental strand, 8776959 - 8776908
Alignment:
Q  209 acgtgtccgacaccgagacacacctattccgaggagtgttactgcttcatag 260  Q
    |||||||||||||||||||||||||| ||||||||||||   ||||||||||    
T  8776959 acgtgtccgacaccgagacacacctaatccgaggagtgtccgtgcttcatag 8776908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 150 - 192
Target Start/End: Complemental strand, 2153937 - 2153895
Alignment:
Q  150 aataatttaagaaaatgatataattaagtgtaatcataggtgt 192  Q
    ||||||||||||||||||||||||| |||||||| ||||||||    
T  2153937 aataatttaagaaaatgatataatttagtgtaattataggtgt 2153895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 136 - 201
Target Start/End: Complemental strand, 12086409 - 12086344
Alignment:
Q  136 acgtcaacaaggataataatttaagaaaatgatataattaagtgtaatcataggtgttgtgtcgga 201  Q
    ||||| ||| |||||||||||| ||| ||||| |||||| ||| ||||||||||||| ||||||||    
T  12086409 acgtcgacacggataataatttgagataatgacataattcagtttaatcataggtgtcgtgtcgga 12086344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 149 - 260
Target Start/End: Original strand, 34595142 - 34595253
Alignment:
Q  149 taataatttaagaaaatgatataattaagtgtaatcataggtgttg-tgtcggacactgatacgtgtccgacaccgagacacacctattccgaggagtgt 247  Q
    ||||||||| | ||||| | |||||| |||||||| | | |||| | |||||||||| || ||||||| ||||||| |||||||||| ||||||||||||    
T  34595142 taataatttgaaaaaatcacataattcagtgtaattacaagtgtcggtgtcggacac-gacacgtgtctgacaccgggacacacctaatccgaggagtgt 34595240  T
Q  248 tactgcttcatag 260  Q
       ||||||||||    
T  34595241 ccgtgcttcatag 34595253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 194 - 261
Target Start/End: Original strand, 28152152 - 28152218
Alignment:
Q  194 gtgtcggacactgatacgtgtccgacaccgagacacacctattccgaggagtgttactgcttcatagt 261  Q
    ||||||||||| || ||||||||||||||| ||||  |||| |||||||||||||  |||||||||||    
T  28152152 gtgtcggacac-gacacgtgtccgacaccgggacaggcctaatccgaggagtgttcgtgcttcatagt 28152218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 149 - 192
Target Start/End: Complemental strand, 30781345 - 30781302
Alignment:
Q  149 taataatttaagaaaatgatataattaagtgtaatcataggtgt 192  Q
    ||||||||| ||||||||| |||||||| |||||||||||||||    
T  30781345 taataatttgagaaaatgacataattaattgtaatcataggtgt 30781302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 146 - 192
Target Start/End: Original strand, 6299517 - 6299563
Alignment:
Q  146 ggataataatttaagaaaatgatataattaagtgtaatcataggtgt 192  Q
    |||||||||||| |||||||||||||||| | |||||| ||||||||    
T  6299517 ggataataatttgagaaaatgatataattcaatgtaatgataggtgt 6299563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 146 - 192
Target Start/End: Original strand, 6306327 - 6306373
Alignment:
Q  146 ggataataatttaagaaaatgatataattaagtgtaatcataggtgt 192  Q
    |||||||||||| |||||||||||||||| | |||||| ||||||||    
T  6306327 ggataataatttgagaaaatgatataattcaatgtaatgataggtgt 6306373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 151 - 260
Target Start/End: Complemental strand, 13364754 - 13364645
Alignment:
Q  151 ataatttaagaaaatgatataattaagtgtaatcataggtgt-tgtgtcggacactgatacgtgtccgacaccgagacacacctattccgaggagtgtta 249  Q
    ||||||| ||||||| |||||||| |||||||||||| ||||  |||| |||||| ||||| |||| ||||||  |||||  ||||||||| ||||||      
T  13364754 ataatttgagaaaatcatataattcagtgtaatcatatgtgtcggtgttggacac-gatacatgtctgacaccaggacacgtctattccgacgagtgtct 13364656  T
Q  250 ctgcttcatag 260  Q
     ||||||||||    
T  13364655 gtgcttcatag 13364645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 146 - 200
Target Start/End: Original strand, 26247431 - 26247485
Alignment:
Q  146 ggataataatttaagaaaatgatataattaagtgtaatcataggtgttgtgtcgg 200  Q
    |||||||||||||||||||||| ||| || ||| ||||||||||| | |||||||    
T  26247431 ggataataatttaagaaaatgacatattttagtataatcataggtttcgtgtcgg 26247485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 136 - 189
Target Start/End: Original strand, 7625117 - 7625170
Alignment:
Q  136 acgtcaacaaggataataatttaagaaaatgatataattaagtgtaatcatagg 189  Q
    ||||| ||| |||||||||||| |||||||||||||||| ||| |||| |||||    
T  7625117 acgtcgacacggataataatttgagaaaatgatataatttagtataattatagg 7625170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 154 - 194
Target Start/End: Complemental strand, 4420225 - 4420185
Alignment:
Q  154 atttaagaaaatgatataattaagtgtaatcataggtgttg 194  Q
    |||| |||||||||||||||| ||||||| |||||||||||    
T  4420225 atttgagaaaatgatataattcagtgtaaccataggtgttg 4420185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 211 - 247
Target Start/End: Complemental strand, 8389457 - 8389421
Alignment:
Q  211 gtgtccgacaccgagacacacctattccgaggagtgt 247  Q
    ||||||||||||| |||||||||| ||||||||||||    
T  8389457 gtgtccgacaccgggacacacctaatccgaggagtgt 8389421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 211 - 247
Target Start/End: Original strand, 31959220 - 31959256
Alignment:
Q  211 gtgtccgacaccgagacacacctattccgaggagtgt 247  Q
    ||||||||||||| |||||||||| ||||||||||||    
T  31959220 gtgtccgacaccgggacacacctaatccgaggagtgt 31959256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 148 - 192
Target Start/End: Complemental strand, 34895086 - 34895042
Alignment:
Q  148 ataataatttaagaaaatgatataattaagtgtaatcataggtgt 192  Q
    |||||||||| ||||||| ||| |||| |||||||||||||||||    
T  34895086 ataataatttgagaaaattatacaattcagtgtaatcataggtgt 34895042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 146 - 204
Target Start/End: Original strand, 12748689 - 12748747
Alignment:
Q  146 ggataataatttaagaaaatgatataattaagtgtaatcataggtgttgtgtcggacac 204  Q
    |||||||||||| ||||||||| ||| || |||||||||||||||||||||||||||||    
T  12748689 ggataataatttgagaaaatgacatagttcagtgtaatcataggtgttgtgtcggacac 12748747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 147 - 200
Target Start/End: Complemental strand, 23354705 - 23354652
Alignment:
Q  147 gataataatttaagaaaatgatataattaagtgtaatcataggtgttgtgtcgg 200  Q
    ||||||||||| |||||||||||||||| ||||||||||||||||| |||||||    
T  23354705 gataataatttgagaaaatgatataatttagtgtaatcataggtgtcgtgtcgg 23354652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 148 - 200
Target Start/End: Original strand, 25544488 - 25544540
Alignment:
Q  148 ataataatttaagaaaatgatataattaagtgtaatcataggtgttgtgtcgg 200  Q
    |||||||||| |||||||||||||||| ||||||||||||||||| |||||||    
T  25544488 ataataatttgagaaaatgatataattcagtgtaatcataggtgtcgtgtcgg 25544540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 147 - 247
Target Start/End: Original strand, 24011042 - 24011148
Alignment:
Q  147 gataataatttaagaaaatgatataattaagtgtaatcataggtgt------tgtgtcggacactgatacgtgtccgacaccgagacacacctattccga 240  Q
    ||||||||||| ||||||||| |||||| |||||||||||||||||       ||||| || || ||| ||||||||||||| |||||||| || |||||    
T  24011042 gataataatttgagaaaatgacataatttagtgtaatcataggtgtcgcgtcggtgtctgatacggatgcgtgtccgacaccaagacacacataatccga 24011141  T
Q  241 ggagtgt 247  Q
     ||||||    
T  24011142 agagtgt 24011148  T

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Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 149 - 262
Target Start/End: Complemental strand, 18841064 - 18840951
Alignment:
Q  149 taataatttaagaaaatgatataattaagtgtaatcataggtgttg-tgtcggacactgatacgtgtccgacaccgagacacacctattccgaggagtgt 247  Q
    ||||||||| | ||||| | ||||||||||||||| | | |||| | |||| ||||| || || |||||||||||| |||||||||| ||||||||||||    
T  18841064 taataatttgaaaaaattacataattaagtgtaattacaagtgtcggtgtcagacac-gacacatgtccgacaccgggacacacctaatccgaggagtgt 18840966  T
Q  248 tactgcttcatagtt 262  Q
       ||||||||||||    
T  18840965 ccgtgcttcatagtt 18840951  T

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Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 147 - 260
Target Start/End: Complemental strand, 34007044 - 34006930
Alignment:
Q  147 gataataatttaagaaaatgatataattaagtgtaatcataggtgt-tgtgtcggacactgatacgtgtccgacaccgagacacacctattccgaggagt 245  Q
    ||||||||||| ||||| ||| |||||| |||||||||||||||||  |||| ||||||  || |||||| |||||||  ||||||||| | | ||||||    
T  34007044 gataataatttgagaaattgacataattcagtgtaatcataggtgtcggtgtgggacacctattcgtgtctgacaccggaacacacctaattcaaggagt 34006945  T
Q  246 gttactgcttcatag 260  Q
    ||   ||||||||||    
T  34006944 gtccgtgcttcatag 34006930  T

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Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 147 - 192
Target Start/End: Complemental strand, 23355048 - 23355003
Alignment:
Q  147 gataataatttaagaaaatgatataattaagtgtaatcataggtgt 192  Q
    ||||||||||| |||||||||||||||| |||| ||||||||||||    
T  23355048 gataataatttgagaaaatgatataatttagtgcaatcataggtgt 23355003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 136 - 186
Target Start/End: Complemental strand, 8817520 - 8817470
Alignment:
Q  136 acgtcaacaaggataataatttaagaaaatgatataattaagtgtaatcat 186  Q
    |||||||||  |||||||||||||||| ||| ||||||| |||||||||||    
T  8817520 acgtcaacaccgataataatttaagaacatggtataattcagtgtaatcat 8817470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 147 - 197
Target Start/End: Complemental strand, 10535812 - 10535762
Alignment:
Q  147 gataataatttaagaaaatgatataattaagtgtaatcataggtgttgtgt 197  Q
    ||||||||||| ||||||||| |||||| |||||||||||| |||| ||||    
T  10535812 gataataatttgagaaaatgacataattcagtgtaatcataagtgtcgtgt 10535762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 148 - 186
Target Start/End: Original strand, 22085011 - 22085049
Alignment:
Q  148 ataataatttaagaaaatgatataattaagtgtaatcat 186  Q
    |||||||||||||||||||| |||||| |||||||||||    
T  22085011 ataataatttaagaaaatgacataatttagtgtaatcat 22085049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 194 - 260
Target Start/End: Original strand, 27084323 - 27084388
Alignment:
Q  194 gtgtcggacactgatacgtgtccgacaccgagacacacctattccgaggagtgttactgcttcatag 260  Q
    ||||||||||| || |||||||| |||||||||||| |||| || |||||||||  |||||||||||    
T  27084323 gtgtcggacac-gacacgtgtccaacaccgagacacgcctaatcggaggagtgtctctgcttcatag 27084388  T

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Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 146 - 200
Target Start/End: Original strand, 30563414 - 30563468
Alignment:
Q  146 ggataataatttaagaaaatgatataattaagtgtaatcataggtgttgtgtcgg 200  Q
    |||||||||||| ||||||||| |||||| | |||||  ||||||||||||||||    
T  30563414 ggataataatttgagaaaatgacataattcaatgtaactataggtgttgtgtcgg 30563468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 194 - 260
Target Start/End: Original strand, 37419808 - 37419873
Alignment:
Q  194 gtgtcggacactgatacgtgtccgacaccgagacacacctattccgaggagtgttactgcttcatag 260  Q
    ||||||||||| ||| |||||||||||||| ||||| |||| ||||||||||||   ||||||||||    
T  37419808 gtgtcggacac-gatgcgtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcatag 37419873  T

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Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 147 - 197
Target Start/End: Original strand, 38919212 - 38919262
Alignment:
Q  147 gataataatttaagaaaatgatataattaagtgtaatcataggtgttgtgt 197  Q
    ||||||||||| |||||||| |||| || ||||||||||||||||| ||||    
T  38919212 gataataatttgagaaaatgttatagtttagtgtaatcataggtgtcgtgt 38919262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 200
Target Start/End: Complemental strand, 11308053 - 11308004
Alignment:
Q  151 ataatttaagaaaatgatataattaagtgtaatcataggtgttgtgtcgg 200  Q
    ||||||| | ||||||| |||||| ||||||||||||||||| |||||||    
T  11308053 ataatttgaaaaaatgacataattcagtgtaatcataggtgtcgtgtcgg 11308004  T

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Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 147 - 200
Target Start/End: Original strand, 19573984 - 19574037
Alignment:
Q  147 gataataatttaagaaaatgatataattaagtgtaatcataggtgttgtgtcgg 200  Q
    ||||||||||||||||||| | |||||| |||||||| |||||||  |||||||    
T  19573984 gataataatttaagaaaataacataattcagtgtaattataggtggcgtgtcgg 19574037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 148 - 192
Target Start/End: Complemental strand, 4229460 - 4229416
Alignment:
Q  148 ataataatttaagaaaatgatataattaagtgtaatcataggtgt 192  Q
    |||||||||||||| ||||| |||||| |||||||||||| ||||    
T  4229460 ataataatttaagagaatgacataattcagtgtaatcatatgtgt 4229416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 212 - 260
Target Start/End: Original strand, 19980746 - 19980794
Alignment:
Q  212 tgtccgacaccgagacacacctattccgaggagtgttactgcttcatag 260  Q
    ||||||||| ||||||||||||| |||||| ||||||  ||||||||||    
T  19980746 tgtccgacatcgagacacacctaatccgagaagtgttcatgcttcatag 19980794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 147 - 187
Target Start/End: Original strand, 31026701 - 31026741
Alignment:
Q  147 gataataatttaagaaaatgatataattaagtgtaatcata 187  Q
    ||||||||||||||||||||| |||||| | ||||||||||    
T  31026701 gataataatttaagaaaatgacataattcaatgtaatcata 31026741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0199 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 135 - 240
Target Start/End: Original strand, 1943 - 2048
Alignment:
Q  135 tacgtcaacaaggataataatttaagaaaatgatataattaagtgtaatcataggtgttgtgtcggacactgatacgtgtccgacaccgagacacaccta 234  Q
    |||||| ||| ||||||||||||  |||||||| ||| || ||||||||||||||||| ||||||||||| || || |||| ||||||   |||||||||    
T  1943 tacgtcgacacggataataatttgtgaaaatgacatattttagtgtaatcataggtgtcgtgtcggacaccgacacatgtctgacacctgcacacaccta 2042  T
Q  235 ttccga 240  Q
     |||||    
T  2043 atccga 2048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0598 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0598
Description:

Target: scaffold0598; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 146 - 200
Target Start/End: Complemental strand, 8107 - 8053
Alignment:
Q  146 ggataataatttaagaaaatgatataattaagtgtaatcataggtgttgtgtcgg 200  Q
    |||||||||||| ||||||||| |||||| ||||||| ||||||| | |||||||    
T  8107 ggataataatttgagaaaatgacataattcagtgtaaacataggtatcgtgtcgg 8053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0778 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0778
Description:

Target: scaffold0778; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 147 - 188
Target Start/End: Original strand, 4412 - 4453
Alignment:
Q  147 gataataatttaagaaaatgatataattaagtgtaatcatag 188  Q
    |||||||||||||||| ||||||||||| ||||| |||||||    
T  4412 gataataatttaagaatatgatataattcagtgtcatcatag 4453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0652 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 247
Target Start/End: Complemental strand, 452 - 415
Alignment:
Q  210 cgtgtccgacaccgagacacacctattccgaggagtgt 247  Q
    |||||||||||||| |||||||||| ||||||||||||    
T  452 cgtgtccgacaccgggacacacctaatccgaggagtgt 415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 149 - 245
Target Start/End: Original strand, 8806 - 8902
Alignment:
Q  149 taataatttaagaaaatgatataattaagtgtaatcataggtgttg-tgtcggacactgatacgtgtccgacaccgagacacacctattccgaggagt 245  Q
    ||||||||| | ||||| |||| ||| |||||||| | | |||| | |||||||||| || ||||||||||||||||||||| |||| || |||||||    
T  8806 taataatttgaaaaaatcatattatttagtgtaattacaagtgtcggtgtcggacac-gacacgtgtccgacaccgagacacgcctaatctgaggagt 8902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 192
Target Start/End: Original strand, 56932 - 56973
Alignment:
Q  151 ataatttaagaaaatgatataattaagtgtaatcataggtgt 192  Q
    ||||||| |||||||||||||||| |||||||||||| ||||    
T  56932 ataatttgagaaaatgatataattcagtgtaatcataagtgt 56973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0361 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 149 - 260
Target Start/End: Original strand, 14538 - 14646
Alignment:
Q  149 taataatttaagaaaatgatataattaagtgtaatcataggtgttgtgtcggacactgatacgtgtccgacaccgagacacacctattccgaggagtgtt 248  Q
    ||||||||| | ||||| | |||||| |||||||| | | |||  ||||||||||| || ||||||||||||||||||||| |||| ||  ||||||||     
T  14538 taataatttgaaaaaatcacataattcagtgtaattacaagtg--gtgtcggacac-gacacgtgtccgacaccgagacacgcctaatcgaaggagtgta 14634  T
Q  249 actgcttcatag 260  Q
      ||||||||||    
T  14635 cgtgcttcatag 14646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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