View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17239_low_13 (Length: 474)
Name: NF17239_low_13
Description: NF17239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17239_low_13 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 321; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 13 - 401
Target Start/End: Original strand, 29469784 - 29470172
Alignment:
| Q |
13 |
aatatgtgtccgtcttctttaaaagaaatgtgttattttatcaagtgtgtatgtggtgtgtacgggcctataagagaaagaaggttgtaccaaagccata |
112 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29469784 |
aatatgtgtccgtctcctttaaaagaaatgtgttatttcatcaagtgtgtatgtggtgtgtacgggcctataagagaaagaaggttgtaccaaagccata |
29469883 |
T |
|
| Q |
113 |
atccaatgatccaatgaattggcagtaggcttggaacttggaagggaatgcgtcctttaccgtgaaggatatccaaattgtgatgtcagctgaacatgtc |
212 |
Q |
| |
|
|||||||||||||||||||||| |||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29469884 |
atccaatgatccaatgaattggaagtaagcttgaaacttggaagggaatgcgtccttcaccgtgaaggatatccaaattgtgatgtcagctgaacatgta |
29469983 |
T |
|
| Q |
213 |
acaaattgccccttcaagcatcgtgccttgaattctgattccttttatgtggcaaatcatggttcttgattttagtctcatgcacaattctttgttagtc |
312 |
Q |
| |
|
||| | ||||||||||||||| |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |
|
|
| T |
29469984 |
acagagtgccccttcaagcattgtgctttgaattttgattccttttatgtggcaaatcatggttcttgattttagtctaatgcacaattcattgttagtc |
29470083 |
T |
|
| Q |
313 |
ctttggccacgatattgttcacggtttgcatgttaattccacactaatttaagccaatgtatgtagaaccgccagagatggcatgataa |
401 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29470084 |
ctttggccacgatattgttcacggtttgtatgttaatttcacactaattgaagccaatgtatgtagaaccgccagagatggcatgataa |
29470172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 162 - 461
Target Start/End: Original strand, 29462152 - 29462458
Alignment:
| Q |
162 |
gcgtcctttaccgtgaaggatatccaaattgtgatgtcagctgaacatgtcacaaattgccccttcaagcatcgtgccttgaattctgattccttttatg |
261 |
Q |
| |
|
|||||||| |||| ||||||||||||||||||||||||| || |||||||||||| |||||| ||||||| ||||||||||||| ||||||| |||||| |
|
|
| T |
29462152 |
gcgtccttcaccgcgaaggatatccaaattgtgatgtcaactaaacatgtcacaaggtgccccatcaagcaacgtgccttgaattttgattccctttatg |
29462251 |
T |
|
| Q |
262 |
tggcaaatcatggttcttgattttagtctcatgcacaattctttgttagtcctttggccacgatattgttcacggtttg-------catgttaattccac |
354 |
Q |
| |
|
|||| ||||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| ||| |
|
|
| T |
29462252 |
aggcagatcatggttcttgattttattctaatgcacaattctttgttagtcctttggtcacgatattgttcacggtttgcattattcatgttaatttcac |
29462351 |
T |
|
| Q |
355 |
actaatttaagccaatgtatgtagaaccgccagagatggcatgataagtgtcactgttgtagaaaataatgttttgttttgcatacatgtagatggagtt |
454 |
Q |
| |
|
||||||||||||| ||||||||||||| || |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29462352 |
actaatttaagcctatgtatgtagaactgctagagatggcatgataagtgttactgttgtagaaaataatgttttgttttgcatacatgtagatggagtt |
29462451 |
T |
|
| Q |
455 |
gtaattg |
461 |
Q |
| |
|
||||||| |
|
|
| T |
29462452 |
gtaattg |
29462458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 400 - 461
Target Start/End: Original strand, 29478900 - 29478961
Alignment:
| Q |
400 |
aagtgtcactgttgtagaaaataatgttttgttttgcatacatgtagatggagttgtaattg |
461 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29478900 |
aagtgtcactgttgtagaaaataatgttttgttttgcatacatgtagatggagttgtaattg |
29478961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 50
Target Start/End: Original strand, 29481622 - 29481656
Alignment:
| Q |
16 |
atgtgtccgtcttctttaaaagaaatgtgttattt |
50 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| |
|
|
| T |
29481622 |
atgtgtccgtctcctttaaaagaaatgtgttattt |
29481656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University