View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17239_low_14 (Length: 473)
Name: NF17239_low_14
Description: NF17239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17239_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 118; Significance: 5e-60; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 324 - 469
Target Start/End: Complemental strand, 35614341 - 35614198
Alignment:
| Q |
324 |
ggacaatgctctattaagattggacagtaagttcaagttatacaaaagtaactcttcatccaaatcttcacatttcaaacttcaattttaaaacggtctc |
423 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35614341 |
ggacaatgctctattaagattggacagtaagttcaagttatacaaaattaatttttcatccaaatcttcacatttcaaacttcaattttaaaacggtctc |
35614242 |
T |
|
| Q |
424 |
tagggatagaaagatgcatgccgacataaagacactaatcaataac |
469 |
Q |
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| T |
35614241 |
ta-ggatagaaagatgcatgccgacat-aagacactaatcaataac |
35614198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 12 - 235
Target Start/End: Complemental strand, 35614654 - 35614435
Alignment:
| Q |
12 |
gaagacacatcattaatattttggtggtaaccaaattttaacataatnnnnnnntcaatataaaggattnnnnnnncccaatcgacgactcactgtttaa |
111 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| | ||||| ||||||||||||| |
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| T |
35614654 |
gaagacacaccattaatattttggtggtaaccaaattttaacataataaaaaaatcaatataaaggat-aaaaaaactcaatc----actcactgtttaa |
35614560 |
T |
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| Q |
112 |
tacataataataacatctttccaccgattgctgcacaaagttatattgccgtccatcc-nnnnnnnttatgcaatacaaatctgctcccagccacaacca |
210 |
Q |
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| T |
35614559 |
tacataataataacatttttccaccaattgctgcacaaagttatattgccgtccatccaaaaaaaattatgcaatacaaatctgccctcagccacaacca |
35614460 |
T |
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| Q |
211 |
atcttgaaatgtgaatctgaatcac |
235 |
Q |
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| T |
35614459 |
atcttgaaatgtgaatctgaatcac |
35614435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 349 - 469
Target Start/End: Original strand, 36234599 - 36234718
Alignment:
| Q |
349 |
agtaagttcaagttatacaaaagtaactcttcatccaaatcttcacatttcaaacttcaattttaaaacggtctctagggatagaaagatgcatgccgac |
448 |
Q |
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||||| |||||||||||||| |||| | |||||||||||||||||||||||||||||| ||||||||| ||||| ||||| ||||||||||||| ||| |
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| T |
36234599 |
agtaaattcaagttatacaatagtagtttctcatccaaatcttcacatttcaaacttcaaatttaaaacgatctcttgggattgaaagatgcatgctgac |
36234698 |
T |
|
| Q |
449 |
ataaagacactaatcaataac |
469 |
Q |
| |
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|| |||||||||||||||||| |
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| T |
36234699 |
at-aagacactaatcaataac |
36234718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 118; Significance: 5e-60; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 324 - 469
Target Start/End: Complemental strand, 32262226 - 32262082
Alignment:
| Q |
324 |
ggacaatgctctattaagattggacagtaagttcaagttatacaaaagtaactcttcatccaaatcttcacatttcaaacttcaattttaaaacggtctc |
423 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32262226 |
ggacaatgctctattaagattggacagtaagttcaagttatacaaaagtaatttttcatccaaatcttcacatttcaaacttcaattttaaaacggtctc |
32262127 |
T |
|
| Q |
424 |
tagggatagaaagatgcatgccgacataaagacactaatcaataac |
469 |
Q |
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| T |
32262126 |
taaggatagaaagatgcattccgacat-acgacactaatcaataac |
32262082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 12 - 231
Target Start/End: Complemental strand, 32262540 - 32262320
Alignment:
| Q |
12 |
gaagacacatcattaatattttggtggtaaccaaattttaacataatnnnnnnntcaatataaaggattnnnnnnncccaatcgacgactcactgtttaa |
111 |
Q |
| |
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||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| | |||||| ||||||| |
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| T |
32262540 |
gaagacacaccattaatattttggtggtaaccaaattttaacataataaaaaaatcaatataaaggataaaaaaaacccaatccatgactcattgtttaa |
32262441 |
T |
|
| Q |
112 |
tacataataataacatctttccaccgattgctgcacaaagttatattgccgtccatcc-nnnnnnnttatgcaatacaaatctgctcccagccacaacca |
210 |
Q |
| |
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|||||||||||||||| ||||||| |||||||||||||||||||||| ||||||||| ||||||||||||||||||| |||| ||||||||| |
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| T |
32262440 |
tacataataataacattgttccaccaattgctgcacaaagttatattgtcgtccatccaaaaaaaattatgcaatacaaatctgcccccatccacaacca |
32262341 |
T |
|
| Q |
211 |
atcttgaaatgtgaatctgaa |
231 |
Q |
| |
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||||||||||||||||||||| |
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| T |
32262340 |
atcttgaaatgtgaatctgaa |
32262320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 349 - 469
Target Start/End: Complemental strand, 3193198 - 3193079
Alignment:
| Q |
349 |
agtaagttcaagttatacaaaagtaactcttcatccaaatcttcacatttcaaacttcaattttaaaacggtctctagggatagaaagatgcatgccgac |
448 |
Q |
| |
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||||| |||||||||||||| |||| | |||||||||||||||||||||||||||||| ||||||||| ||||| ||||| ||||||||||||| ||| |
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| T |
3193198 |
agtaaattcaagttatacaatagtagtttctcatccaaatcttcacatttcaaacttcaaatttaaaacgatctcttgggattgaaagatgcatgctgac |
3193099 |
T |
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| Q |
449 |
ataaagacactaatcaataac |
469 |
Q |
| |
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|| |||||||||||||||||| |
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| T |
3193098 |
at-aagacactaatcaataac |
3193079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 415 - 469
Target Start/End: Complemental strand, 38406002 - 38405949
Alignment:
| Q |
415 |
aacggtctctagggatagaaagatgcatgccgacataaagacactaatcaataac |
469 |
Q |
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|||| ||||| ||||||||||||||||||| ||||| |||||||||||||||||| |
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| T |
38406002 |
aacgatctcttgggatagaaagatgcatgctgacat-aagacactaatcaataac |
38405949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 342 - 396
Target Start/End: Complemental strand, 38406057 - 38406003
Alignment:
| Q |
342 |
attggacagtaagttcaagttatacaaaagtaactcttcatccaaatcttcacat |
396 |
Q |
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|||||||||||| |||||||||||||| |||| | |||||||||||||||||| |
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| T |
38406057 |
attggacagtaaattcaagttatacaatagtagtttctcatccaaatcttcacat |
38406003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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