View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17239_low_17 (Length: 376)
Name: NF17239_low_17
Description: NF17239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17239_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 13 - 360
Target Start/End: Complemental strand, 43224337 - 43223990
Alignment:
| Q |
13 |
aatatgcatgttgtatttaaattgctgactaaacagcaggnnnnnnnggctatgtttcacaccgtgaacaccttactgacacatgctattatagtgtctt |
112 |
Q |
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| T |
43224337 |
aatatgcatgttgtatttaaattgctgactaaacagcaggtttttttggctatgtttcacaccgtgaacaccttactgacacatgctattatagtgtctt |
43224238 |
T |
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| Q |
113 |
ttgttacgttacgtctctccatctttaaaatttctgcggtttgctattctggacctttgattcatgcttttcatctacgtgcttctccaaaatgtgattg |
212 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |
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| T |
43224237 |
ttattacgttacgtctctccatctttaaaatttctgcggtttgctattctggacctttgattcatgcttttcatctacgtgcttctgcaaaatgtcattg |
43224138 |
T |
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| Q |
213 |
agttagtgcaaggcttgatatagcatatgatgtaagtgaagtgaggaccaaatatgccaagaaccacgatagagcatcatcatatagaagcaattgatag |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43224137 |
agttagtgcaaggcttgatatagcatatgatgtaagtgaagtgaggaccaaatatgccaagaaccacgatagagcatcatcatatagaagcaattgatag |
43224038 |
T |
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| Q |
313 |
ggatggatcagaataagttaatgttattgttatccaatgtggttgatg |
360 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
43224037 |
ggatggttcagaataagttaatgttattgttatccaatgtggttgatg |
43223990 |
T |
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