View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17239_low_19 (Length: 373)
Name: NF17239_low_19
Description: NF17239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17239_low_19 |
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| [»] scaffold0010 (1 HSPs) |
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Alignment Details
Target: scaffold0010 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: scaffold0010
Description:
Target: scaffold0010; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 13 - 358
Target Start/End: Original strand, 252680 - 253025
Alignment:
| Q |
13 |
cagagagatatatttcatcctttgactttggagaaataacccacttgtgtttcttgtaccttagttgaagaaacatgtacatataatcatctaaatcctt |
112 |
Q |
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| T |
252680 |
cagagagatatatttcatcctttgactttggagaaataacccacttgtgtttcttgtaccttagttgaagaaacatgtacatataatcatctaaatcctt |
252779 |
T |
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| Q |
113 |
tcttttacaaaagaacttgtcaatccatagtaaccctcctggtcttaaaattctatcccaatcatacaatatgaaatccaataatagcagatcaatccaa |
212 |
Q |
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| T |
252780 |
tcttttacaaaagaacctatcaatccatagtaaccctcctggtcttaaaattctatcccaatcatacaatatgaaatccaataatagcagatcaatccaa |
252879 |
T |
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| Q |
213 |
ccatccataaacccagttgtatgaatcaaatccataatgttatcaaagaatggaagcctttgatttaatgtaacatataaaggaaccaaaccccttagag |
312 |
Q |
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| T |
252880 |
ccatccataaacccagttgtatgaatcaaatccataatgttatcaaagaatggaagcctttgatttaatgtaacatataaaggaaccaaaccccttagag |
252979 |
T |
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| Q |
313 |
caatcatctcattgaaaggagcaccaaggttcaaagctgttgaaac |
358 |
Q |
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| T |
252980 |
ctatcatctcattgaaaggagcaccaaggttcaaagctgttgaaac |
253025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 132 - 279
Target Start/End: Original strand, 10803582 - 10803729
Alignment:
| Q |
132 |
tcaatccatagtaaccctcctggtcttaaaattctatcccaatcatacaatatgaaatccaataatagcagatcaatccaaccatccataaacccagttg |
231 |
Q |
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|||||||| || ||||| ||||| || |||| |||||||||||||||||| | |||||||| | | | ||| ||||||||||| | ||||| |||| |
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| T |
10803582 |
tcaatccaaagcaacccacctggcctcaaaactctatcccaatcatacaaaacaaaatccaaaagcacaaaatctatccaaccatcaagaaaccttgttg |
10803681 |
T |
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| Q |
232 |
tatgaatcaaatccataatgttatcaaagaatggaagcctttgattta |
279 |
Q |
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| T |
10803682 |
tgtgaatcaaatcaagtgtattgtcaaaaaatggaagcctttgattta |
10803729 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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