View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17239_low_2 (Length: 886)
Name: NF17239_low_2
Description: NF17239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17239_low_2 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 807; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 807; E-Value: 0
Query Start/End: Original strand, 6 - 870
Target Start/End: Original strand, 36825892 - 36826759
Alignment:
| Q |
6 |
agcaccacagaccttctgcacacgtgcaagcaaacgagtaagattactcttcaagcttctaacatgttcaagattcttagtactaacattcttggccaaa |
105 |
Q |
| |
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|||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36825892 |
agcagcacacaccttctgcacacgtgcaagcaaacgagtaagattactcttcaagcttctaacatgttcaagattcttagtactaacattcttggccaaa |
36825991 |
T |
|
| Q |
106 |
gcatccaacacaggataagcacctttctcaagttcagcaacatttttatccagatatgtacaaacaacttccaaagcaatctccaacacctgaaattcaa |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36825992 |
gcatccaacacaggataagcacctttctcaagttcagcaacatttttatccagatatgtacaaacaacttccaaagcaatctccaacacctgaaattcaa |
36826091 |
T |
|
| Q |
206 |
aaggaagcggaagctcttcagcaccctcaggcacagactcatcaccgccaccagcacctccaagaagcttaggttgagtcttatgtggaagctgttgcct |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36826092 |
aaggaagcggaagctcttcagcaccctcaggcacagactcatcaccgccaccagcacctccaagaagcttaggttgagtcttatgtggaagctgttgcct |
36826191 |
T |
|
| Q |
306 |
caattgttcaacaaatggaagaacctcttgacgcaaaggatcaagcaataaaatctcttcagctgtaacaattgcttttataaactccaaattcacaacc |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36826192 |
caattgttcaacaaatggaagaacctcttgacgcaaaggatcaagcaataaaatctcttcagctgtaacaattgcttttataaactccaaattcacaacc |
36826291 |
T |
|
| Q |
406 |
attgctttctctctcgctataaacac----aataaataaataattaagaaacacgaaaccctaattcataaactaattgaaattgtaagccctaaaaatt |
501 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
36826292 |
attgctttctctctcgctataaacacaataaataaataaataattaagaaacaagaaaccctaattcataaactaattgaaattgtaagccct-aaaatt |
36826390 |
T |
|
| Q |
502 |
gaattaccgaggatattggaggaatgagagaagacagggccaagaattctgaggtctctagcgggaatagcggcatggcggattattgtatttttctccc |
601 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
36826391 |
gaattaccgaggatattggaggaatgagagaagacagggccaagaattctgaggtctctagcgggaatagcggcatggcggattatggtatttttctccc |
36826490 |
T |
|
| Q |
602 |
actcaacgagttcagacttaccgaaacggtcgaaccgcatccataatctagcaccaccggnnnnnnncttcggtttagggactaggcgattctcagacgg |
701 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
36826491 |
actcaacgagttcagacttaccgaaacggtcgaaccgcatccataatctagcaccaccggtttttttcttcggtttagggactaggcgattctcagacgg |
36826590 |
T |
|
| Q |
702 |
tgaaccggtgatttcgagcgtcggcggtggagagcggggaggcggtgagggaagtttgttggagcggcggcgaaaggagagaaggctcttggtcttgctg |
801 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36826591 |
tgaaccggtgatttcgagcgtcggcggtggagagcggggaggcggtgagggaagtttgttggagcggcggcgaaaggagagaaggctcttggtcttgctg |
36826690 |
T |
|
| Q |
802 |
gtctttttaccacccatggtttcattcagaaattaattatgaatagcgaacgaaagagtaattggtgtt |
870 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36826691 |
gtctttttaccacccatggtttcattcagaaattaattatgaatagcgaacgaaagagtaattggtgtt |
36826759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 328 - 809
Target Start/End: Original strand, 33433192 - 33433658
Alignment:
| Q |
328 |
acctcttgacgcaaaggatcaagcaataaaatctcttcagctgtaacaattgcttttataaactccaaattcacaaccattgctttctctctcgctataa |
427 |
Q |
| |
|
|||||||||| |||||||||||| || |||||||||| ||||||||||||||||||||||||||||||||| ||||| ||||||| ||||| ||| | |
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| T |
33433192 |
acctcttgacacaaaggatcaagtaacaaaatctctttcaatgtaacaattgcttttataaactccaaattcactaccatggctttctttctcgttatta |
33433291 |
T |
|
| Q |
428 |
acacaataaataaa----taattaagaaacacgaaaccctaattcataaacta-attgaaattgtaagccctaaaaattgaattaccgaggatattggag |
522 |
Q |
| |
|
|||||||||||||| ||||||||||||| |||| ||||||||| |||||| ||||||||||||| |||||||| |||||||| |||||||||||||| |
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|
| T |
33433292 |
acacaataaataaagaattaattaagaaacatgaaatcctaattcacaaactagattgaaattgtaaaccctaaaa-ttgaattatcgaggatattggag |
33433390 |
T |
|
| Q |
523 |
gaatgagagaagacagggccaagaattctgaggtctctagcgggaatagcggcatggcggattattgtatttttctcccactcaacgagttcagacttac |
622 |
Q |
| |
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||||||||||||||| | || |||||| ||||||||||||||||||| |||||||||| ||| || || |||||||||||||| ||||||||| |||||| |
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|
| T |
33433391 |
gaatgagagaagacatgaccgagaattttgaggtctctagcgggaatggcggcatggcagatgatggtgtttttctcccactcgacgagttcatacttac |
33433490 |
T |
|
| Q |
623 |
cgaaacggtcgaaccgcatccataatctagcaccaccggnnnnnnncttcggtttagggactaggcgattctcagacggtgaaccggtgatttcgagcgt |
722 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||| ||||||||||||||| |
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|
| T |
33433491 |
cgaaccggtcaaaccgcatccataatctagcaccac-------------aggttt------taggcgattctcagatggtgaactggtgatttcgagcgt |
33433571 |
T |
|
| Q |
723 |
cggcggtggagagcggggaggcggtgagggaagtttgttggagcggcggcgaaaggagagaaggctcttggtcttgctggtcttttt |
809 |
Q |
| |
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| ||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || |||||||| |
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| T |
33433572 |
caacggcggagagcggggaggcggtgagggaagtttgttggagcggcagcgaaaggagagaaggctcttggtcttacttgtcttttt |
33433658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 328 - 809
Target Start/End: Original strand, 19251971 - 19252436
Alignment:
| Q |
328 |
acctcttgacgcaaaggatcaagcaataaaatctcttcagctgtaacaattgcttttataaactccaaattcacaaccattgctttctctctcgctataa |
427 |
Q |
| |
|
|||||||||| |||||||||||| || |||||||||| ||||||| ||||||||||||||||||||||||| ||||| ||||| | ||||| ||| | |
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|
| T |
19251971 |
acctcttgacacaaaggatcaagtaacaaaatctctttcaatgtaacagttgcttttataaactccaaattcactaccatggctttatttctcgttatta |
19252070 |
T |
|
| Q |
428 |
acacaataa---ataaataattaagaaacacgaaaccctaattcataaacta-attgaaattgtaagccctaaaaattgaattaccgaggatattggagg |
523 |
Q |
| |
|
||||||||| | || ||||||| ||||| |||| ||||||||| |||||| ||||||||||||| |||||||| |||||||| ||||||||||||||| |
|
|
| T |
19252071 |
acacaataataaagaattaattaataaacatgaaatcctaattcacaaactagattgaaattgtaaaccctaaaa-ttgaattatcgaggatattggagg |
19252169 |
T |
|
| Q |
524 |
aatgagagaagacagggccaagaattctgaggtctctagcgggaatagcggcatggcggattattgtatttttctcccactcaacgagttcagacttacc |
623 |
Q |
| |
|
|||||||||||||| | || |||||| ||||||||||||||||||| ||||||||| ||| || || |||||||||||||| ||||||||||||||||| |
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|
| T |
19252170 |
aatgagagaagacatgaccgagaattttgaggtctctagcgggaatggcggcatggaagatgatggtgtttttctcccactcgacgagttcagacttacc |
19252269 |
T |
|
| Q |
624 |
gaaacggtcgaaccgcatccataatctagcaccaccggnnnnnnncttcggtttagggactaggcgattctcagacggtgaaccggtgatttcgagcgtc |
723 |
Q |
| |
|
||| ||||| ||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||| |||||||||||||||| |
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|
| T |
19252270 |
gaaccggtcaaaccgcatccataatctagcaccac-------------aggttt------taggcgattctcagatggtgaactggtgatttcgagcgtc |
19252350 |
T |
|
| Q |
724 |
ggcggtggagagcggggaggcggtgagggaagtttgttggagcggcggcgaaaggagagaaggctcttggtcttgctggtcttttt |
809 |
Q |
| |
|
||| |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| || |||||||| |
|
|
| T |
19252351 |
aacggcggagagcggggaggcggtgaggaaagtttgttggagcggcagcgaaaggagagaaggctcttggtcttacttgtcttttt |
19252436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 403 - 448
Target Start/End: Original strand, 25442130 - 25442175
Alignment:
| Q |
403 |
accattgctttctctctcgctataaacacaataaataaataattaa |
448 |
Q |
| |
|
||||| |||||||||| |||||| |||||||||||||| ||||||| |
|
|
| T |
25442130 |
accatggctttctctcacgctattaacacaataaataattaattaa |
25442175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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