View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17239_low_22 (Length: 324)
Name: NF17239_low_22
Description: NF17239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17239_low_22 |
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Alignment Details
Target: chr5 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 281
Target Start/End: Original strand, 3658696 - 3658976
Alignment:
| Q |
1 |
ttttagaccgccagtgccgagggctgtgacataaagtgctaaatacatcaccaatagttgcttgctgtctgcttgtatgcaagatttagagtcttctttg |
100 |
Q |
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| T |
3658696 |
ttttagaccgccagtgccgagggctgtgatataaagtgctaaatacatcaccaatagttgcttgctgtctgcttgtatgcaagatttagagtcttctttg |
3658795 |
T |
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| Q |
101 |
cattttggtggatgtaagcttggaattatagttgatatcgtcaatattgttacaccctaatataaacacacattcgtcaagatcaaagaattaaacaagt |
200 |
Q |
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| T |
3658796 |
cattttggtggatgtaagcttggaattatagttgatatcgtcaatattgttacaccctaatataaacatacattcgtcaagatcaaagaattaaacaagt |
3658895 |
T |
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| Q |
201 |
gatgtattttgatttgaggatttaattcaaagacattgttaacgtaagaaaaatttacattgtcaattaattataatcgtc |
281 |
Q |
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| T |
3658896 |
gatgtattttgatttgaggatttaattcaaagacattgttaacataagaaaaatttacattgtcaattaattataatcgtc |
3658976 |
T |
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Target: chr4 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 99 - 168
Target Start/End: Complemental strand, 41872691 - 41872622
Alignment:
| Q |
99 |
tgcattttggtggatgtaagcttggaattatagttgatatcgtcaatattgttacaccctaatataaaca |
168 |
Q |
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| T |
41872691 |
tgcattttggtggatgtaggcttggaattattgttgatattgtcaagattgtaacaccctagtatgaaca |
41872622 |
T |
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