View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17239_low_24 (Length: 317)
Name: NF17239_low_24
Description: NF17239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17239_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 298
Target Start/End: Complemental strand, 26643192 - 26642895
Alignment:
| Q |
1 |
ttagaaactattctcttcaaatttcgaatagcatattgtgaaaatgatgtgtacgtgatgtagttaaacttaaacatgcttgccagtgcaataaacagca |
100 |
Q |
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| T |
26643192 |
ttagaaactattctcttcaaatttcgaatagcatattgtgaaaatgatgtgtacgtgatgtagttaaacttaaacatgcttgccagtgcaataaacagca |
26643093 |
T |
|
| Q |
101 |
tttgaatgttcaatgcaaacgaatgaagatataccagaacgtgaagtaatcgatgccagtgaaaagttcctgagcctagtaatctcactgatagtattag |
200 |
Q |
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| T |
26643092 |
tttgaatgttcaatgcaaacgaatgaagatataccagaacgtgaagtaatcgatgccagtgaaaagttcctgagcctagtaatctcactgatagtattag |
26642993 |
T |
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| Q |
201 |
ccttcaaattatcagaaatcacgtctcttccaagcttttgaacatcgctgtttccaatgcacctcaatgcattttcacatgcctattcaccaaacagt |
298 |
Q |
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| T |
26642992 |
ccttcaaattatcagaaatcacgtctcttccaagcttttgaacatcgctgtttccaatgcacctcaatgcattttcacatgcctattcaccaaacagt |
26642895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 103 - 296
Target Start/End: Complemental strand, 26656559 - 26656366
Alignment:
| Q |
103 |
tgaatgttcaatgcaaacgaatgaagatataccagaacgtgaagtaatcgatgccagtgaaaagttcctgagcctagtaatctcactgatagtattagcc |
202 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||| |||| ||||| ||| |||||||||||||||||||| ||||||| ||||||| |
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| T |
26656559 |
tgaatgttcaatgcaaaccaatgaagatataccagaacgtgaagtaattgatgtcagtgcaaaattcctgagcctagtaatctcgctgatagcattagcc |
26656460 |
T |
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| Q |
203 |
ttcaaattatcagaaatcacgtctcttccaagcttttgaacatcgctgtttccaatgcacctcaatgcattttcacatgcctattcaccaaaca |
296 |
Q |
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| T |
26656459 |
ttcaaattttcaggaatcgcgtctcttccaagcttttgaacattgttatttccaatgcacctcaatgcattttcacatgcctattcaccaaaca |
26656366 |
T |
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