View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17239_low_25 (Length: 307)
Name: NF17239_low_25
Description: NF17239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17239_low_25 |
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Alignment Details
Target: chr8 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 18 - 289
Target Start/End: Original strand, 36825669 - 36825940
Alignment:
| Q |
18 |
atagattgcatataagaatacaaatagtaatccaattaatcaattattcagtcatccaataccaaacttccacatccatctatagctagcaaacaaatta |
117 |
Q |
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| T |
36825669 |
atagattgcatataagaatacaaatagtaatccaattaatcaattattcagtcatccaataccaaacttccacatccatctatagctagcaaacaaatta |
36825768 |
T |
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| Q |
118 |
ttttcagtaacttaacaagcaaactcagaaaatacaaagatttaacagttgaaaaacacaaacaaacacaaaggggttagttattataaattataatcat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36825769 |
ttttcagtaacttaacaagcaaactcagaaaatacaaagatttaacagttgaaaaacacaaacaaacacaaaggggttagttattataaattataatcat |
36825868 |
T |
|
| Q |
218 |
aacatataacaaaacaaaagataagcagcacacaccttctgcacacgtgcaaacaaacgagtaagattactc |
289 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
36825869 |
aacatataacaaaacaaaagataagcagcacacaccttctgcacacgtgcaagcaaacgagtaagattactc |
36825940 |
T |
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