View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17239_low_28 (Length: 292)
Name: NF17239_low_28
Description: NF17239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17239_low_28 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 14 - 292
Target Start/End: Original strand, 3658374 - 3658652
Alignment:
| Q |
14 |
agggcaattgcatgtgtctcttcctccaagcagccacaaacacgaccgcaatctgagtcaaaggactaccgacaagttgcttgatccggtacttgcgggt |
113 |
Q |
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| T |
3658374 |
agggcaattgcatgtgtctcttcctccaagcagccacaaacacgaccgcaatctgagtcaaaggactaccgacaagttgcttgatccggtacttgcgggt |
3658473 |
T |
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| Q |
114 |
accggacaagaaaacaaggagcgcaaccacaattgcgaccgcacaaataccgtaaccccaacctctaccttggttatcttgtatgtacacaagaacagtc |
213 |
Q |
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| T |
3658474 |
accggacaagaaaacaaggagcgcaaccacaattgcgaccgcacaaataccgtaaccccaacctctaccttggttatcttgtatgtacacaagaacagtc |
3658573 |
T |
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| Q |
214 |
actgctgccaaagaccctatgcttacgaaaaaatagaaccagctgaaaaatttaatcatacccttcttttcttggtcat |
292 |
Q |
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| T |
3658574 |
actgctgccaaagaccctatgcttacgaaaaaatagaaccagctgaaaaatttaatcatacccttcttttcttggtcat |
3658652 |
T |
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Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 16 - 83
Target Start/End: Original strand, 3645943 - 3646010
Alignment:
| Q |
16 |
ggcaattgcatgtgtctcttcctccaagcagccacaaacacgaccgcaatctgagtcaaaggactacc |
83 |
Q |
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| T |
3645943 |
ggcaattgcaagtgcctcttcctccaagcggccacaaacactaccgcaatctgagtcaagggactacc |
3646010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 31 - 83
Target Start/End: Complemental strand, 41873097 - 41873045
Alignment:
| Q |
31 |
ctcttcctccaagcagccacaaacacgaccgcaatctgagtcaaaggactacc |
83 |
Q |
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| T |
41873097 |
ctcttcctccaagcagccacataaaccactgcaatctgagtcaaaggactacc |
41873045 |
T |
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