View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17239_low_3 (Length: 752)

Name: NF17239_low_3
Description: NF17239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17239_low_3
NF17239_low_3
[»] chr4 (8 HSPs)
chr4 (15-737)||(33997853-33998577)
chr4 (15-115)||(8747691-8747792)
chr4 (15-115)||(8749004-8749104)
chr4 (57-115)||(8896953-8897011)
chr4 (57-117)||(48157678-48157738)
chr4 (59-115)||(40168639-40168695)
chr4 (59-122)||(9397437-9397500)
chr4 (59-114)||(40169781-40169836)
[»] chr2 (9 HSPs)
chr2 (15-117)||(27553764-27553867)
chr2 (15-115)||(27552452-27552553)
chr2 (57-115)||(12812836-12812894)
chr2 (15-115)||(10851913-10852013)
chr2 (59-117)||(28851674-28851732)
chr2 (68-116)||(24192244-24192291)
chr2 (59-115)||(45413479-45413535)
chr2 (59-117)||(1389231-1389289)
chr2 (15-45)||(28617993-28618023)
[»] chr1 (10 HSPs)
chr1 (265-378)||(6230075-6230188)
chr1 (15-117)||(46525799-46525902)
chr1 (57-115)||(46312065-46312123)
chr1 (15-117)||(2999489-2999591)
chr1 (15-115)||(3000170-3000271)
chr1 (68-115)||(14512669-14512716)
chr1 (15-113)||(46524542-46524641)
chr1 (15-115)||(14204837-14204939)
chr1 (57-115)||(50379972-50380030)
chr1 (59-120)||(43706901-43706962)
[»] chr3 (8 HSPs)
chr3 (15-117)||(10584039-10584142)
chr3 (15-117)||(32829738-32829841)
chr3 (15-115)||(51220560-51220660)
chr3 (59-117)||(26722531-26722589)
chr3 (59-115)||(26723906-26723962)
chr3 (57-117)||(51219460-51219520)
chr3 (57-115)||(32831090-32831148)
chr3 (57-115)||(53157176-53157233)
[»] chr7 (4 HSPs)
chr7 (15-115)||(9805383-9805484)
chr7 (15-117)||(35080281-35080384)
chr7 (15-115)||(35081558-35081659)
chr7 (66-115)||(23621990-23622039)
[»] chr6 (7 HSPs)
chr6 (57-117)||(22417656-22417716)
chr6 (15-120)||(22418894-22419000)
chr6 (59-123)||(6978139-6978203)
chr6 (59-115)||(20409067-20409123)
chr6 (60-115)||(12181595-12181650)
chr6 (67-117)||(10120173-10120223)
chr6 (59-96)||(15888990-15889027)
[»] chr5 (10 HSPs)
chr5 (15-115)||(124487-124587)
chr5 (15-117)||(5504093-5504196)
chr5 (62-115)||(3597323-3597376)
chr5 (59-117)||(3598924-3598982)
chr5 (57-115)||(5502918-5502975)
chr5 (57-115)||(121349-121407)
chr5 (57-116)||(14189663-14189722)
chr5 (57-115)||(14190487-14190545)
chr5 (59-117)||(17414542-17414600)
chr5 (63-117)||(17415695-17415749)
[»] chr8 (4 HSPs)
chr8 (67-115)||(13883878-13883926)
chr8 (59-115)||(38612219-38612275)
chr8 (59-115)||(38613419-38613475)
chr8 (15-115)||(13882655-13882756)


Alignment Details
Target: chr4 (Bit Score: 668; Significance: 0; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 668; E-Value: 0
Query Start/End: Original strand, 15 - 737
Target Start/End: Original strand, 33997853 - 33998577
Alignment:
15 gcaaaggggctaaatcttagggggcaaaattttcannnnnnn-attagggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttag 113  Q
    |||||||||||||||||||||||||||||||||||        ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
33997853 gcaaaggggctaaatcttagggggcaaaattttcattttttttattagggggtcaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttag 33997952  T
114 ccaagataatttgcgaaagttttgggcaatgacagaaagagctataaagtgattatcaagcattctcttgagaaagagtgctgtgaataatgcaggttct 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
33997953 ccaagataatttgcgaaagttttgggcaatgacagaaagagctataaagtgattatcaagcattctcttgagaaagagtgctgtgaataatgcaggttct 33998052  T
214 gatttctgaaggcaacaacatatcatcacccttatgaacttgaaatcttttgtgttgaaggaacatagttatgggatccgtatggtataagtatggagct 313  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
33998053 gatttctgaaggcaacaacatatcatcacccttatgaacttgaaatcttttgtgttgaaggaacatagttatgggatccgtatggtataagtgtggagct 33998152  T
314 tggaaagagagacattggtccctacaagcatttaggtgcaattgatgctaaatctttcaatgcaagtcacaatagagaaacctcatcaaagcttcattta 413  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
33998153 tgaaaagagagacattggtccctacaagcatttaggtgcaattgatgctaaatctttcaatgcaagtcacaatagagaaacctcatcaaagcttcattta 33998252  T
414 aaggaatcaattttcaatctgt-caagatgaagttaggaagcacaatagcactattgtaagtgaatctgtccagaaaaagtaaaaccaattggtgccaat 512  Q
    |||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
33998253 aaggaatcaattttgaatctgtccaagatgaagttaggaagcacaatagcactattgtaagtgaatctgtccagaaaaagtaaaaccaattggtgccaat 33998352  T
513 gaaataaggcatctcaacaagaataatctctatatctatgattgaatcttgagttaattaggtgaacgatatgcactccactctaacttgctacaagaat 612  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
33998353 gaaataaggcatctcaacaagaatgatctctatatctatgattgaatcttgagttaattaggtgaacgatatgcactccactctaacttgctacaagaat 33998452  T
613 tcaccacaatctcttatattgacaaatcatgacttttcaaatcaaattatacacatattcttcacaaggaatgatgttttaattagttaactgaaaacaa 712  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
33998453 tcaccacaatctcttatattgacaaatcatgacttttcaaatcaaattatacacatattcttcacaaggaatgatgttttaattagttaactgaaaacaa 33998552  T
713 tgcaacgataagatctgaagaaaat 737  Q
    |||||||||||||||||||||||||    
33998553 tgcaacgataagatctgaagaaaat 33998577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 15 - 115
Target Start/End: Complemental strand, 8747792 - 8747691
Alignment:
15 gcaaaggggctaaatcttagggggcaaaattttcannnnnnn-attagggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttag 113  Q
    |||||||||||||| | ||||||||||||| ||||        ||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||    
8747792 gcaaaggggctaaaacatagggggcaaaatattcattttttttattagggggccaaaatcgcaacattggcaaacttaaggggtcaaaactgtagtttag 8747693  T
114 cc 115  Q
    ||    
8747692 cc 8747691  T

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Target: chr4; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 15 - 115
Target Start/End: Original strand, 8749004 - 8749104
Alignment:
15 gcaaaggggctaaatcttagggggcaaaattttcannnnnnnattagggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttagc 114  Q
    |||||||||||||| | ||||||||||||| || |       ||||||||||||||||||||||||| ||||||||| |||||||||| |||||||||||    
8749004 gcaaaggggctaaaacatagggggcaaaatatttatttttttattagggggccaaaatcgcaacattggcaaacttaaggggtcaaaagtgtagtttagc 8749103  T
115 c 115  Q
    |    
8749104 c 8749104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 57 - 115
Target Start/End: Original strand, 8896953 - 8897011
Alignment:
57 attagggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttagcc 115  Q
    |||||||| ||||||||| |||||| |||||||||||| ||||||||||||||||||||    
8896953 attaggggaccaaaatcgtaacattggcaaacttagggagtcaaaactgtagtttagcc 8897011  T

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Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 57 - 117
Target Start/End: Original strand, 48157678 - 48157738
Alignment:
57 attagggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttagccaa 117  Q
    |||||||||||||||||||| | |||  ||| ||||||||||||||||| |||||||||||    
48157678 attagggggccaaaatcgcacctttatgaaagttagggggtcaaaactgcagtttagccaa 48157738  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 59 - 115
Target Start/End: Complemental strand, 40168695 - 40168639
Alignment:
59 tagggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttagcc 115  Q
    |||||||||||||||||| ||||   ||| ||||||||||||||||| |||||||||    
40168695 tagggggccaaaatcgcaccattgtaaaagttagggggtcaaaactgcagtttagcc 40168639  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 122
Target Start/End: Original strand, 9397437 - 9397500
Alignment:
59 tagggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttagccaagataa 122  Q
    ||||||||||||||| |||||||   ||||||||||||| |||| || ||||||||||| ||||    
9397437 tagggggccaaaatcccaacattttaaaacttagggggtgaaaagtgcagtttagccaaaataa 9397500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 114
Target Start/End: Original strand, 40169781 - 40169836
Alignment:
59 tagggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttagc 114  Q
    |||||||||||||||||| ||||   ||| ||||||||||||||||| ||||||||    
40169781 tagggggccaaaatcgcaccattgtgaaagttagggggtcaaaactgcagtttagc 40169836  T

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Target: chr2 (Bit Score: 67; Significance: 2e-29; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 15 - 117
Target Start/End: Original strand, 27553764 - 27553867
Alignment:
15 gcaaaggggctaaatcttagggggcaaaattttcannnnnnn-attagggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttag 113  Q
    |||||||||||||||||||||||||||||||||||        |||||| |||||||||||||||||||||||||||||||||| |||||||||||||||    
27553764 gcaaaggggctaaatcttagggggcaaaattttcattttttttattaggaggccaaaatcgcaacattagcaaacttagggggttaaaactgtagtttag 27553863  T
114 ccaa 117  Q
    ||||    
27553864 ccaa 27553867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 15 - 115
Target Start/End: Complemental strand, 27552553 - 27552452
Alignment:
15 gcaaaggggctaaatcttagggggcaaaattttcannnnnnn-attagggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttag 113  Q
    ||||||||| ||||||||||||||| |||||||||        ||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||    
27552553 gcaaaggggttaaatcttagggggctaaattttcattttttttattagggagccaaaatcgcaacattggcaaatttagggggtcaaaactgtagtttag 27552454  T
114 cc 115  Q
    ||    
27552453 cc 27552452  T

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Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 57 - 115
Target Start/End: Complemental strand, 12812894 - 12812836
Alignment:
57 attagggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttagcc 115  Q
    ||||||||||||||||| ||||||||||||||||| | |||||||||||||| ||||||    
12812894 attagggggccaaaatctcaacattagcaaacttaagaggtcaaaactgtagcttagcc 12812836  T

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Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 15 - 115
Target Start/End: Complemental strand, 10852013 - 10851913
Alignment:
15 gcaaaggggctaaatcttagggggcaaaattttcannnnnnnattagggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttagc 114  Q
    |||||||||||||| | ||||||| ||||||||||       | |||||||  ||||||||||||||   ||| ||||||||||||||||||||||||||    
10852013 gcaaaggggctaaaacatagggggtaaaattttcatttttttaatagggggttaaaatcgcaacattgataaagttagggggtcaaaactgtagtttagc 10851914  T
115 c 115  Q
    |    
10851913 c 10851913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 59 - 117
Target Start/End: Original strand, 28851674 - 28851732
Alignment:
59 tagggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttagccaa 117  Q
    ||||||| |||||||||||||||   ||| ||||||||||||||||| |||||||||||    
28851674 tagggggtcaaaatcgcaacattgtgaaagttagggggtcaaaactgcagtttagccaa 28851732  T

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Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 68 - 116
Target Start/End: Complemental strand, 24192291 - 24192244
Alignment:
68 aaaatcgcaacattagcaaacttagggggtcaaaactgtagtttagcca 116  Q
    |||||||||||||||||||||||  |||| |||||||||||||||||||    
24192291 aaaatcgcaacattagcaaactt-tggggccaaaactgtagtttagcca 24192244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 59 - 115
Target Start/End: Original strand, 45413479 - 45413535
Alignment:
59 tagggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttagcc 115  Q
    |||||||||||||||||| ||||   ||| ||||||||||||||||| |||||||||    
45413479 tagggggccaaaatcgcaccattgtgaaagttagggggtcaaaactgcagtttagcc 45413535  T

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Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 59 - 117
Target Start/End: Complemental strand, 1389289 - 1389231
Alignment:
59 tagggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttagccaa 117  Q
    |||||||||||||||||| ||||   ||| ||||||||| ||||||| |||||||||||    
1389289 tagggggccaaaatcgcaccattctgaaagttagggggttaaaactgcagtttagccaa 1389231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 15 - 45
Target Start/End: Complemental strand, 28618023 - 28617993
Alignment:
15 gcaaaggggctaaatcttagggggcaaaatt 45  Q
    |||||||||||||||||||||||||||||||    
28618023 gcaaaggggctaaatcttagggggcaaaatt 28617993  T

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Target: chr1 (Bit Score: 62; Significance: 2e-26; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 265 - 378
Target Start/End: Original strand, 6230075 - 6230188
Alignment:
265 gtgttgaaggaacatagttatgggatccgtatggtataagtatggagcttggaaagagagacattggtccctacaagcatttaggtgcaattgatgctaa 364  Q
    |||||||||||||| |||| ||||| |||||||| ||  || ||||  |||||| ||| || ||||||||||||||||||||| ||||||||||||||||    
6230075 gtgttgaaggaacagagttttgggacccgtatggcatctgtctggaatttggaaggagggatattggtccctacaagcatttatgtgcaattgatgctaa 6230174  T
365 atctttcaatgcaa 378  Q
    ||||||||||||||    
6230175 atctttcaatgcaa 6230188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 15 - 117
Target Start/End: Original strand, 46525799 - 46525902
Alignment:
15 gcaaaggggctaaatcttagggggcaaaattttcannnnnnn-attagggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttag 113  Q
    ||||||||||||||||||||||||| |||||||||        |||||| |||||||||||||||||| |||||||||||||| ||||||||||| ||||    
46525799 gcaaaggggctaaatcttagggggccaaattttcattttttttattaggaggccaaaatcgcaacattggcaaacttagggggccaaaactgtagattag 46525898  T
114 ccaa 117  Q
    ||||    
46525899 ccaa 46525902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 57 - 115
Target Start/End: Complemental strand, 46312123 - 46312065
Alignment:
57 attagggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttagcc 115  Q
    ||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||    
46312123 attagggggccaaaatcgcaacattggtaaagttagggggtcaaaactgtagtttagcc 46312065  T

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Target: chr1; HSP #4
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 15 - 117
Target Start/End: Complemental strand, 2999591 - 2999489
Alignment:
15 gcaaaggggctaaatcttagggggcaaaattttcannnnnnnattagggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttagc 114  Q
    ||||||||||||||  ||||||| |||||||||||       ||||||||  |||||||||||||||  |||| |||| |||||||||||||||||||||    
2999591 gcaaaggggctaaaatttaggggtcaaaattttcatttttttattaggggatcaaaatcgcaacattgacaaagttagagggtcaaaactgtagtttagc 2999492  T
115 caa 117  Q
    |||    
2999491 caa 2999489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 15 - 115
Target Start/End: Original strand, 3000170 - 3000271
Alignment:
15 gcaaaggggctaaatcttagggggcaaaattttcannnnnnn-attagggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttag 113  Q
    |||||||||||||| |||||||||||||||||| |        ||||| ||  |||||||||||||||| |||| ||| |||||||||||||||||||||    
3000170 gcaaaggggctaaaacttagggggcaaaatttttattttttttattagaggatcaaaatcgcaacattaacaaaattaaggggtcaaaactgtagtttag 3000269  T
114 cc 115  Q
    ||    
3000270 cc 3000271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 68 - 115
Target Start/End: Original strand, 14512669 - 14512716
Alignment:
68 aaaatcgcaacattagcaaacttagggggtcaaaactgtagtttagcc 115  Q
    |||||||||||||||| |||||||||||| ||||||||||||||||||    
14512669 aaaatcgcaacattagtaaacttagggggccaaaactgtagtttagcc 14512716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 113
Target Start/End: Complemental strand, 46524641 - 46524542
Alignment:
15 gcaaaggggctaaatcttagggggcaaaattttcannnnnnn-attagggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttag 113  Q
    ||||||||||||||||||||||||| ||||||| |        || ||||| ||||||| |||||||| | |||||||||||| ||||||||||||||||    
46524641 gcaaaggggctaaatcttagggggccaaatttttattttttttatcaggggaccaaaattgcaacattggtaaacttagggggccaaaactgtagtttag 46524542  T

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Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 115
Target Start/End: Complemental strand, 14204939 - 14204837
Alignment:
15 gcaaaggggctaaatcttag-ggggcaaaattttcannnnnnn-attagggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagttta 112  Q
    |||||||||||||||||||| |||| ||||||||||        ||||| |||||||||||||| ||||  ||||| || |||| |||||||||||||||    
14204939 gcaaaggggctaaatcttagaggggtaaaattttcaatatttttattagagggccaaaatcgcagcattgtcaaacataaggggccaaaactgtagttta 14204840  T
113 gcc 115  Q
    |||    
14204839 gcc 14204837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 57 - 115
Target Start/End: Original strand, 50379972 - 50380030
Alignment:
57 attagggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttagcc 115  Q
    |||||||| ||||||||||| | |||  ||| ||||||||||||||||| |||||||||    
50379972 attaggggaccaaaatcgcacctttatgaaagttagggggtcaaaactgcagtttagcc 50380030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 120
Target Start/End: Original strand, 43706901 - 43706962
Alignment:
59 tagggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttagccaagat 120  Q
    |||||||||||||||||||||||   ||| ||||||||  |||| || ||||||||||||||    
43706901 tagggggccaaaatcgcaacattttaaaaattagggggcaaaaagtggagtttagccaagat 43706962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 1e-24; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 15 - 117
Target Start/End: Original strand, 10584039 - 10584142
Alignment:
15 gcaaaggggctaaatcttagggggcaaaattttcannnnnnn-attagggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttag 113  Q
    ||||||||||||||||||||||||| ||||||| |        ||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||    
10584039 gcaaaggggctaaatcttagggggccaaattttaattttttttattagggggccaaaatcgcaacattggcaaacttaggggatcaaaactgtagtttag 10584138  T
114 ccaa 117  Q
    ||||    
10584139 ccaa 10584142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 15 - 117
Target Start/End: Complemental strand, 32829841 - 32829738
Alignment:
15 gcaaaggggctaaatcttagggggcaaaattttcannnnnnn-attagggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttag 113  Q
    |||||||||||||| | ||||||||||||| ||||        ||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||    
32829841 gcaaaggggctaaaacatagggggcaaaatattcattttttttattagggggccaaaatcgcaaaattggcaaacttagggggtcaaaactgtagtttag 32829742  T
114 ccaa 117  Q
    ||||    
32829741 ccaa 32829738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 15 - 115
Target Start/End: Original strand, 51220560 - 51220660
Alignment:
15 gcaaaggggctaaatcttagggggcaaaattttcannnnnnnattagggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttagc 114  Q
    |||||||||||||| | ||||||||||||| ||||       |||||||||| ||||||||||||||  |||||||| ||||||||||||||||||||||    
51220560 gcaaaggggctaaaacatagggggcaaaatattcatttttttattagggggctaaaatcgcaacattgacaaacttaaggggtcaaaactgtagtttagc 51220659  T
115 c 115  Q
    |    
51220660 c 51220660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 59 - 117
Target Start/End: Complemental strand, 26722589 - 26722531
Alignment:
59 tagggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttagccaa 117  Q
    ||||||||||||||||||||||| | |||||||||||| ||||||||||||||||||||    
26722589 tagggggccaaaatcgcaacattggtaaacttagggggccaaaactgtagtttagccaa 26722531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 59 - 115
Target Start/End: Original strand, 26723906 - 26723962
Alignment:
59 tagggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttagcc 115  Q
    |||||||||||||| |||||||||| |||||||||||| ||||||||||||||||||    
26723906 tagggggccaaaattgcaacattagtaaacttagggggccaaaactgtagtttagcc 26723962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 57 - 117
Target Start/End: Complemental strand, 51219520 - 51219460
Alignment:
57 attagggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttagccaa 117  Q
    |||||||||||||||| ||||||||  |||||||||| |||||||||||||||||||||||    
51219520 attagggggccaaaattgcaacattgacaaacttaggaggtcaaaactgtagtttagccaa 51219460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 57 - 115
Target Start/End: Original strand, 32831090 - 32831148
Alignment:
57 attagggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttagcc 115  Q
    ||||| ||| |||||||||||||||  ||||| ||||||||||||||||||||||||||    
32831090 attagagggtcaaaatcgcaacattgacaaacatagggggtcaaaactgtagtttagcc 32831148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 57 - 115
Target Start/End: Original strand, 53157176 - 53157233
Alignment:
57 attagggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttagcc 115  Q
    ||||| |||||| |||||||||||| ||||||||| |||||||||||||||||||||||    
53157176 attagagggccagaatcgcaacattggcaaactta-ggggtcaaaactgtagtttagcc 53157233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 2e-23; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 15 - 115
Target Start/End: Original strand, 9805383 - 9805484
Alignment:
15 gcaaaggggctaaatcttagggggcaaaattttcannnnnnn-attagggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttag 113  Q
    ||||||||||||||||| ||||||| |||||||||        ||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||    
9805383 gcaaaggggctaaatctcagggggccaaattttcattttttctattagagggccaaaatcgcaacattggcaaacttagggggtcaaaactgtagtttag 9805482  T
114 cc 115  Q
    ||    
9805483 cc 9805484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 15 - 117
Target Start/End: Complemental strand, 35080384 - 35080281
Alignment:
15 gcaaaggggctaaatcttagggggcaaaattttcannnnnnn-attagggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttag 113  Q
    |||||||||||||| | ||||||||||||| ||||        |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||    
35080384 gcaaaggggctaaaacatagggggcaaaatattcattttttttattaggggaccaaaatcgcaacattggcaaacttagggggtcaaaactgtagtttag 35080285  T
114 ccaa 117  Q
    ||||    
35080284 ccaa 35080281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 15 - 115
Target Start/End: Original strand, 35081558 - 35081659
Alignment:
15 gcaaaggggctaaatcttagggggcaaaattttcannnnnnn-attagggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttag 113  Q
    |||||||||||||| | ||||||||||||| ||||        ||||||| |||||||||||||||||  ||||||||||||||||||||||||||||||    
35081558 gcaaaggggctaaaacatagggggcaaaatattcattttttttattagggcgccaaaatcgcaacattgacaaacttagggggtcaaaactgtagtttag 35081657  T
114 cc 115  Q
    ||    
35081658 cc 35081659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 66 - 115
Target Start/End: Original strand, 23621990 - 23622039
Alignment:
66 ccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttagcc 115  Q
    |||||||||||||||| ||||||||||| || ||||||||||||||||||    
23621990 ccaaaatcgcaacattggcaaacttaggaggccaaaactgtagtttagcc 23622039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 5e-21; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 57 - 117
Target Start/End: Complemental strand, 22417716 - 22417656
Alignment:
57 attagggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttagccaa 117  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||    
22417716 attagggggccaaaatcgtaacattagcaaacttagggggtcaaaactgtagtttaaccaa 22417656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 15 - 120
Target Start/End: Original strand, 22418894 - 22419000
Alignment:
15 gcaaaggggctaaatcttagggggcaaaattttca-nnnnnnnattagggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttag 113  Q
    |||||||||||||||||||||||||||||||||||        |||||||| | ||||||| ||||||  ||||||||||||| |||||| |||||||||    
22418894 gcaaaggggctaaatcttagggggcaaaattttcattttttttattaggggacaaaaatcgtaacattgacaaacttagggggccaaaaccgtagtttag 22418993  T
114 ccaagat 120  Q
    || ||||    
22418994 cctagat 22419000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 59 - 123
Target Start/End: Original strand, 6978139 - 6978203
Alignment:
59 tagggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttagccaagataat 123  Q
    ||||| |||||||||||| ||||   ||| ||||||||| ||||||| |||||||||||||||||    
6978139 tagggagccaaaatcgcaccattgtgaaagttagggggttaaaactgcagtttagccaagataat 6978203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 59 - 115
Target Start/End: Complemental strand, 20409123 - 20409067
Alignment:
59 tagggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttagcc 115  Q
    |||||||||||||||||| ||||   ||| ||||||||||||||||| |||||||||    
20409123 tagggggccaaaatcgcaccattgtgaaagttagggggtcaaaactgcagtttagcc 20409067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 115
Target Start/End: Complemental strand, 12181650 - 12181595
Alignment:
60 agggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttagcc 115  Q
    |||||||||||||| |||||||  |||| ||||| ||||||||||| |||||||||    
12181650 agggggccaaaatcccaacatttacaaagttaggaggtcaaaactgcagtttagcc 12181595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 67 - 117
Target Start/End: Complemental strand, 10120223 - 10120173
Alignment:
67 caaaatcgcaacattagcaaacttagggggtcaaaactgtagtttagccaa 117  Q
    |||||||||||||||  ||||||||||||| ||||| ||| ||||||||||    
10120223 caaaatcgcaacattgacaaacttagggggccaaaattgttgtttagccaa 10120173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 96
Target Start/End: Complemental strand, 15889027 - 15888990
Alignment:
59 tagggggccaaaatcgcaacattagcaaacttaggggg 96  Q
    |||||||||||||| |||||||| ||||||||||||||    
15889027 tagggggccaaaattgcaacatttgcaaacttaggggg 15888990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 2e-20; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 15 - 115
Target Start/End: Original strand, 124487 - 124587
Alignment:
15 gcaaaggggctaaatcttagggggcaaaattttcannnnnnnattagggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttagc 114  Q
    ||||||||||||||   ||||||||||||| ||||       ||||||||||||||||||||||||| ||||||||| | ||||||||||||||||||||    
124487 gcaaaggggctaaaatatagggggcaaaatattcatttttttattagggggccaaaatcgcaacattggcaaacttaagaggtcaaaactgtagtttagc 124586  T
115 c 115  Q
    |    
124587 c 124587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 15 - 117
Target Start/End: Original strand, 5504093 - 5504196
Alignment:
15 gcaaaggggctaaatcttagggggcaaaattttcannnnnnn-attagggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttag 113  Q
    |||||||||||||| | ||||||||||||| ||||        ||||||||| ||||||||||||||| ||||||||| | |||||||||||||||||||    
5504093 gcaaaggggctaaaacatagggggcaaaatattcattttttttattagggggtcaaaatcgcaacattggcaaacttaagaggtcaaaactgtagtttag 5504192  T
114 ccaa 117  Q
    ||||    
5504193 ccaa 5504196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 62 - 115
Target Start/End: Complemental strand, 3597376 - 3597323
Alignment:
62 ggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttagcc 115  Q
    |||||||||||||||||||||| |||||||||||| ||||||||||||||||||    
3597376 ggggccaaaatcgcaacattagtaaacttagggggccaaaactgtagtttagcc 3597323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 59 - 117
Target Start/End: Original strand, 3598924 - 3598982
Alignment:
59 tagggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttagccaa 117  Q
    ||||||||||||||||||||||| | ||| |||||||  ||||||||||||||||||||    
3598924 tagggggccaaaatcgcaacattggtaaatttaggggaccaaaactgtagtttagccaa 3598982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 57 - 115
Target Start/End: Complemental strand, 5502975 - 5502918
Alignment:
57 attagggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttagcc 115  Q
    |||||||||||||||| |||||||| |||||||||  ||||||||||||||||||||||    
5502975 attagggggccaaaattgcaacattggcaaactta-agggtcaaaactgtagtttagcc 5502918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 57 - 115
Target Start/End: Complemental strand, 121407 - 121349
Alignment:
57 attagggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttagcc 115  Q
    ||||||||| |||||| |||||||| ||||| |||| | ||||||||||||||||||||    
121407 attagggggtcaaaattgcaacattggcaaatttagagtgtcaaaactgtagtttagcc 121349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 116
Target Start/End: Complemental strand, 14189722 - 14189663
Alignment:
57 attagggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttagcca 116  Q
    |||||||| ||||||||||| | |||  ||| ||||||||||||||||| ||||||||||    
14189722 attaggggaccaaaatcgcacctttatgaaagttagggggtcaaaactgcagtttagcca 14189663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 57 - 115
Target Start/End: Original strand, 14190487 - 14190545
Alignment:
57 attagggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttagcc 115  Q
    |||||||| ||||||||||| | |||  ||| ||||||||||||||||| |||||||||    
14190487 attaggggaccaaaatcgcacctttatgaaagttagggggtcaaaactgcagtttagcc 14190545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 59 - 117
Target Start/End: Complemental strand, 17414600 - 17414542
Alignment:
59 tagggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttagccaa 117  Q
    |||||||||||||||||| ||||   ||| |||| |||||||||||| |||||||||||    
17414600 tagggggccaaaatcgcaccattgtaaaagttagagggtcaaaactgcagtttagccaa 17414542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 63 - 117
Target Start/End: Original strand, 17415695 - 17415749
Alignment:
63 gggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttagccaa 117  Q
    |||||||||||||| ||||   ||| ||||||||||||||||| |||||||||||    
17415695 gggccaaaatcgcaccattgtgaaagttagggggtcaaaactgcagtttagccaa 17415749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 67 - 115
Target Start/End: Original strand, 13883878 - 13883926
Alignment:
67 caaaatcgcaacattagcaaacttagggggtcaaaactgtagtttagcc 115  Q
    |||||||||||||||  |||||||| |||||||||||||||||||||||    
13883878 caaaatcgcaacattgacaaacttaaggggtcaaaactgtagtttagcc 13883926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 115
Target Start/End: Complemental strand, 38612275 - 38612219
Alignment:
59 tagggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttagcc 115  Q
    |||||||||||||||||||||||   ||| ||||||||||||||||| |||||||||    
38612275 tagggggccaaaatcgcaacattgtgaaagttagggggtcaaaactgcagtttagcc 38612219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 115
Target Start/End: Original strand, 38613419 - 38613475
Alignment:
59 tagggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttagcc 115  Q
    |||||||||||||||||||||||   ||| ||||||||||||||||| |||||||||    
38613419 tagggggccaaaatcgcaacattgtgaaagttagggggtcaaaactgcagtttagcc 38613475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 15 - 115
Target Start/End: Complemental strand, 13882756 - 13882655
Alignment:
15 gcaaaggggctaaatcttagggggcaaaattttcannnnnnn-attagggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttag 113  Q
    |||||||||||||| | ||||||||||||| ||||        ||||||||| ||||||  ||||||| ||||||||||| | |||||| ||||||||||    
13882756 gcaaaggggctaaaacatagggggcaaaatattcattttttttattagggggtcaaaattacaacattggcaaacttaggagatcaaaattgtagtttag 13882657  T
114 cc 115  Q
    ||    
13882656 cc 13882655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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