View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17239_low_33 (Length: 256)
Name: NF17239_low_33
Description: NF17239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17239_low_33 |
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| [»] chr4 (3 HSPs) |
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| [»] chr5 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 20 - 256
Target Start/End: Complemental strand, 49280240 - 49280004
Alignment:
| Q |
20 |
tgcaccaattcaaatcacaactgagcagattcttatcgaagataaggaactccaacagattaaattacctgaagttgattacttgaaccacacgctatta |
119 |
Q |
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| T |
49280240 |
tgcaccaattcaaatcacaactgagctgattcttatcgaagataaggaactccaacagattaaattacctgaagttgattacttgaaccacacgctatta |
49280141 |
T |
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| Q |
120 |
aattacccatgcaagattgtggcatttgaaaaagaagcgagggaaaatcctttcaactatgattcctggttaagctatatacgattggaagaaagtgtag |
219 |
Q |
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| T |
49280140 |
aattacccatgcaagattgtggcatttgaaaaagaagcgagggaaaatcctttcaactatgattcctggttaagctatatacgattggaagaaagtgtgg |
49280041 |
T |
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| Q |
220 |
gggatgaggaaaaaactagggaggtttatgagagagc |
256 |
Q |
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| T |
49280040 |
gggatgaggaaaaaactagggaggtttatgagagagc |
49280004 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 88 - 256
Target Start/End: Complemental strand, 49276615 - 49276447
Alignment:
| Q |
88 |
ctgaagttgattacttgaaccacacgctattaaattacccatgcaagattgtggcatttgaaaaagaagcgagggaaaatcctttcaactatgattcctg |
187 |
Q |
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| T |
49276615 |
ctgaagttgatgacttaaaccacacgctattaaattactcatgcaagattgtggtatttgaaaacgaagtgagggaaaatcctttcaactatgattcctg |
49276516 |
T |
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| Q |
188 |
gttaagctatatacgattggaagaaagtgtaggggatgaggaaaaaactagggaggtttatgagagagc |
256 |
Q |
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| T |
49276515 |
gtttgaatatatacgattggaagaaagtgtaggggataaggaaaaaactagggaggtttatgagagagc |
49276447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 24 - 74
Target Start/End: Complemental strand, 49276712 - 49276662
Alignment:
| Q |
24 |
ccaattcaaatcacaactgagcagattcttatcgaagataaggaactccaa |
74 |
Q |
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| T |
49276712 |
ccaattcaaatcacaactgagaagattcttatcgaagctaaggaactccaa |
49276662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 153 - 256
Target Start/End: Complemental strand, 2292776 - 2292673
Alignment:
| Q |
153 |
gaagcgagggaaaatcctttcaactatgattcctggttaagctatatacgattggaagaaagtgtaggggatgaggaaaaaactagggaggtttatgaga |
252 |
Q |
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| T |
2292776 |
gaagtgaggaaaaatccgttgaattatgattcatggtttgattatataagattggaagagagtgttgggaataaggaaagaactagggaggtttatgaga |
2292677 |
T |
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| Q |
253 |
gagc |
256 |
Q |
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|||| |
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| T |
2292676 |
gagc |
2292673 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 195 - 256
Target Start/End: Original strand, 34788460 - 34788521
Alignment:
| Q |
195 |
tatatacgattggaagaaagtgtaggggatgaggaaaaaactagggaggtttatgagagagc |
256 |
Q |
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|||||| |||||||||| ||||| ||| || |||||| |||||||||||||||||||||||| |
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| T |
34788460 |
tatataagattggaagagagtgtcgggaataaggaaagaactagggaggtttatgagagagc |
34788521 |
T |
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