View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17239_low_4 (Length: 658)
Name: NF17239_low_4
Description: NF17239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17239_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 136; Significance: 1e-70; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 481 - 624
Target Start/End: Original strand, 3375072 - 3375215
Alignment:
| Q |
481 |
ggcttttcaaatatgaatattcatctatctcaatatacaatatgaatattcatcgataaacaactctaccaattcaaaaagtttaccaccgtcttcaagt |
580 |
Q |
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| T |
3375072 |
ggcttttcaaatatgaatattcatctctctcaatatacaatatgaatattcatcgataaacaactctaccaattcaaaaagtttaccaccgtcttcaagt |
3375171 |
T |
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| Q |
581 |
cgaatatgtgtatctccattgatgttccacaaccttatttcaca |
624 |
Q |
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| T |
3375172 |
cgaatatgtgtatctccattgatgttccaaaaccttatttcaca |
3375215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 128; E-Value: 8e-66
Query Start/End: Original strand, 481 - 624
Target Start/End: Original strand, 3400118 - 3400261
Alignment:
| Q |
481 |
ggcttttcaaatatgaatattcatctatctcaatatacaatatgaatattcatcgataaacaactctaccaattcaaaaagtttaccaccgtcttcaagt |
580 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
3400118 |
ggcttttcaaatatgaatattcatctctctcaatatacaatatgaatattcatcgttaaaaaactctaccaattcaaaaagtttaccaccgtcttcaagt |
3400217 |
T |
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| Q |
581 |
cgaatatgtgtatctccattgatgttccacaaccttatttcaca |
624 |
Q |
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| T |
3400218 |
cgaatatgtgtatctccattgatgttccacaaacttatttcaca |
3400261 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 265 - 356
Target Start/End: Original strand, 3374868 - 3374959
Alignment:
| Q |
265 |
taaaagagtaagtattgaaaaatgttttttaaagcatgttttattcggggttgatccaagggtaaggtcatcaaagcaaccgttttaggtct |
356 |
Q |
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| T |
3374868 |
taaaagagtaagtattgaaaaatgtttgttaaagcatgttttgttcagggttgatccaagggtaaggtcatcaaagcaaccgttttaggtct |
3374959 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 405 - 459
Target Start/End: Original strand, 3400033 - 3400087
Alignment:
| Q |
405 |
gccctaggccaccaaaacttcatggtaccaaattgttttctttaccataattcat |
459 |
Q |
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| T |
3400033 |
gccctaggccaccaaaacttcatggtaccaaattgttttctttgccataattcat |
3400087 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 417 - 459
Target Start/End: Original strand, 3375013 - 3375055
Alignment:
| Q |
417 |
caaaacttcatggtaccaaattgttttctttaccataattcat |
459 |
Q |
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| T |
3375013 |
caaaacttcatggtaccaaattgttttctttaccataattcat |
3375055 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 539 - 580
Target Start/End: Original strand, 3395635 - 3395676
Alignment:
| Q |
539 |
aacaactctaccaattcaaaaagtttaccaccgtcttcaagt |
580 |
Q |
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| T |
3395635 |
aacaactctgccaattcaaaaagttcaccaccgtcttcaagt |
3395676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 83
Target Start/End: Original strand, 3369630 - 3369671
Alignment:
| Q |
42 |
ctacatttgaattggcttatgaatgacctagttaggcttatg |
83 |
Q |
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| T |
3369630 |
ctacatttgaattggcttatgaataacttatttaggcttatg |
3369671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 539 - 580
Target Start/End: Original strand, 3370011 - 3370052
Alignment:
| Q |
539 |
aacaactctaccaattcaaaaagtttaccaccgtcttcaagt |
580 |
Q |
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| T |
3370011 |
aacaactctgccagttcaaaaagttcaccaccgtcttcaagt |
3370052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 83
Target Start/End: Original strand, 3395247 - 3395288
Alignment:
| Q |
42 |
ctacatttgaattggcttatgaatgacctagttaggcttatg |
83 |
Q |
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| T |
3395247 |
ctacatttgaattggcttatgaataacttatttaggcttatg |
3395288 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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