View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17239_low_5 (Length: 598)
Name: NF17239_low_5
Description: NF17239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17239_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 529; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 529; E-Value: 0
Query Start/End: Original strand, 1 - 577
Target Start/End: Original strand, 11592422 - 11592998
Alignment:
| Q |
1 |
acaaagcaaccaataaacaataacccatagccctaaaataaacaggataaatcttactctggaccacagcaaattgttgtcttggcataaccctagacaa |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11592422 |
acaaagcaaccaataaacaataacccatagccctaaaataaacaggataaatcttactctggaccacagcaaattgttgtcttggcataaccctagacaa |
11592521 |
T |
|
| Q |
101 |
aacataactagaaacaaatgttatccaaacattcattccataaccacttgaaaatcccaataaattcaacaaactcatcaatgattcaactctctccatt |
200 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
11592522 |
aacataactagaaacaaatgtgatccaaacattcattccataaccacttgaaaatcccaacaaattcaacaaactcatcaatgattcaactctctccatt |
11592621 |
T |
|
| Q |
201 |
gataatgacataaacttcttcacaccgtctttcgcttcggtcacgttgtgaacaacatgttccttaaacgtttgtcccatctctttccctttttctaatg |
300 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||| |
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| T |
11592622 |
gataatgacataaacttcttcacaccgtctttcgcctcggtcacgttgtgaacaacatgttctttaaacgtttgtcccatttctttgcctttttctaatg |
11592721 |
T |
|
| Q |
301 |
acccttttgtgtattcttgaacattatcataaacatcatttgctttatcataaactctctctttagcattatcaactgcatcaacaacattgttaccaac |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11592722 |
acccttttgtgtattcttgaacattatcataaacatcatttgctttatcataaactctctctttagcattatcaactgcatcaacaacattgttaccaac |
11592821 |
T |
|
| Q |
401 |
ttctttcactgcttctttgtttgaataaacaatatctctcttcttatcaattgtttctgaagctttatcctttgctttctccattacatgtttgcattta |
500 |
Q |
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| T |
11592822 |
ttctttcactgcttctttgtttgaattaacaatatctctcttcttatcaattgtttctgaggctttatcctttgctttctccatcacatgtttgcattta |
11592921 |
T |
|
| Q |
501 |
ccatatgcatcacaaataagctctttagcatctctagcattaggagtatgaagattataatgtgatgaagatgcatc |
577 |
Q |
| |
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| T |
11592922 |
ccatatgcatcacaaataagctctttagcatttttggcattaggagtatgaagattataatgtgatgaagatgcatc |
11592998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 529; E-Value: 0
Query Start/End: Original strand, 1 - 577
Target Start/End: Complemental strand, 11645697 - 11645121
Alignment:
| Q |
1 |
acaaagcaaccaataaacaataacccatagccctaaaataaacaggataaatcttactctggaccacagcaaattgttgtcttggcataaccctagacaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11645697 |
acaaagcaaccaataaacaataacccatagccctaaaataaacaggataaatcttactctggaccacagcaaattgttgtcttggcataaccctagacaa |
11645598 |
T |
|
| Q |
101 |
aacataactagaaacaaatgttatccaaacattcattccataaccacttgaaaatcccaataaattcaacaaactcatcaatgattcaactctctccatt |
200 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
11645597 |
aacataactagaaacaaatgtgatccaaacattcattccataaccacttgaaaatcccaacaaattcaacaaactcatcaatgattcaactctctccatt |
11645498 |
T |
|
| Q |
201 |
gataatgacataaacttcttcacaccgtctttcgcttcggtcacgttgtgaacaacatgttccttaaacgtttgtcccatctctttccctttttctaatg |
300 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||| |
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| T |
11645497 |
gataatgacataaacttcttcacaccgtctttcgcctcggtcacgttgtgaacaacatgttctttaaacgtttgtcccatttctttgcctttttctaatg |
11645398 |
T |
|
| Q |
301 |
acccttttgtgtattcttgaacattatcataaacatcatttgctttatcataaactctctctttagcattatcaactgcatcaacaacattgttaccaac |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11645397 |
acccttttgtgtattcttgaacattatcataaacatcatttgctttatcataaactctctctttagcattatcaactgcatcaacaacattgttaccaac |
11645298 |
T |
|
| Q |
401 |
ttctttcactgcttctttgtttgaataaacaatatctctcttcttatcaattgtttctgaagctttatcctttgctttctccattacatgtttgcattta |
500 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |
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| T |
11645297 |
ttctttcactgcttctttgtttgaattaacaatatctctcttcttatcaattgtttctgaggctttatcctttgctttctccatcacatgtttgcattta |
11645198 |
T |
|
| Q |
501 |
ccatatgcatcacaaataagctctttagcatctctagcattaggagtatgaagattataatgtgatgaagatgcatc |
577 |
Q |
| |
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||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||| |
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| T |
11645197 |
ccatatgcatcacaaataagctctttagcatttttggcattaggagtatgaagattataatgtgatgaagatgcatc |
11645121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 240; Significance: 1e-132; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 240; E-Value: 1e-132
Query Start/End: Original strand, 135 - 526
Target Start/End: Complemental strand, 37181056 - 37180666
Alignment:
| Q |
135 |
attccataaccacttgaaaatccc-aataaattcaacaaactcatcaatgattcaactctctccattgataatgacataaacttcttcacaccgtctttc |
233 |
Q |
| |
|
|||||||||||||||| ||||||| || ||||||||| || |||||||||||||||||||||| |||||||||| ||||||||| |||||||||| |
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| T |
37181056 |
attccataaccacttgcaaatccctaacaaattcaactctttcgtcaatgattcaactctctccatagataatgacacaaacttctttacaccgtcttat |
37180957 |
T |
|
| Q |
234 |
gcttcggtcacgttgtgaacaacatgttccttaaacgtttgtcccatctctttc-cctttttctaatgacccttttgtgtattcttgaacattatcataa |
332 |
Q |
| |
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| ||||||||||| | ||||||||||||| || ||||||||||| | ||| |||||||| ||||||||||||||| | |||||||||||||||||| |
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| T |
37180956 |
gtctcggtcacgtt---accaacatgttccttcaatgtttgtcccatttttttttcctttttccaatgacccttttgtggaatcttgaacattatcataa |
37180860 |
T |
|
| Q |
333 |
acatcatttgctttatcataaactctctctttagcattatcaactgcatcaacaacattgttaccaacttctttcactgcttctttgtttgaataaacaa |
432 |
Q |
| |
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|||||||| ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
37180859 |
acatcattagctttatcataaactttctctttaacattatcaactgcatcaacaacattgttaccaacttctttcactgcttctttgtttgcataaacaa |
37180760 |
T |
|
| Q |
433 |
tatctctcttcttatcaattgtttctgaagctttatcctttgctttctccattacatgtttgcatttaccatatgcatcacaaataagctcttt |
526 |
Q |
| |
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|||||||||||||||||||||||| ||| |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |
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| T |
37180759 |
tatctctcttcttatcaattgtttatgaggctttatcctttgctttctccattgcgtgtttgcatttaccatatgcatcacaaataagctcttt |
37180666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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