View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17239_low_6 (Length: 594)

Name: NF17239_low_6
Description: NF17239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17239_low_6
NF17239_low_6
[»] chr3 (2 HSPs)
chr3 (513-591)||(50247709-50247787)
chr3 (527-563)||(50247637-50247673)
[»] chr4 (3 HSPs)
chr4 (131-267)||(46885043-46885182)
chr4 (178-267)||(37685152-37685242)
chr4 (388-438)||(46885285-46885336)
[»] chr8 (3 HSPs)
chr8 (136-267)||(7498475-7498609)
chr8 (375-441)||(21546021-21546088)
chr8 (490-562)||(7498691-7498763)


Alignment Details
Target: chr3 (Bit Score: 63; Significance: 4e-27; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 513 - 591
Target Start/End: Original strand, 50247709 - 50247787
Alignment:
Q  513 gtgtgaaggatgttttatatagtcaatagacattatactttattgacttgaggccgacaaacattacctatgctactcc 591  Q
    ||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| ||||    
T  50247709 gtgtgtaggatgttttatatagtcactagacattatactttattgacttgaggccgacaaacattacttatgcttctcc 50247787  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 527 - 563
Target Start/End: Complemental strand, 50247673 - 50247637
Alignment:
Q  527 ttatatagtcaatagacattatactttattgacttga 563  Q
    ||||||||||| |||||||||||||||||||||||||    
T  50247673 ttatatagtcactagacattatactttattgacttga 50247637  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 131 - 267
Target Start/End: Original strand, 46885043 - 46885182
Alignment:
Q  131 tacccatggtaatatataccatgaaagtttctgaaaagtttaa--tgtttgatttcaaccatttcatttattattctatgaaatttaaattttcaaatgg 228  Q
    ||||||| |||  |||| |||||||||||| ||| |||||  |  ||| |||||| ||| |||||||||| ||| |||| |||  |||||||||||||||    
T  46885043 tacccattgtatcatatcccatgaaagtttttgagaagttgcaattgtgtgatttgaacaatttcatttagtatcctataaaaaataaattttcaaatgg 46885142  T
Q  229 tatatgtcgtgcagttttggtgtca-aattgataagagaa 267  Q
     || |||| || ||||||||||||| ||||||||||||||    
T  46885143 catgtgtcatgtagttttggtgtcacaattgataagagaa 46885182  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 178 - 267
Target Start/End: Complemental strand, 37685242 - 37685152
Alignment:
Q  178 tgatttcaaccatttcatttattattctatgaaatttaaattttcaaatggtatatgtcgtgcagttttggtgtca-aattgataagagaa 267  Q
    |||||||||| | |||||||| |||| ||| ||| |||||||||||||||| || |||| ||| |||||||||||| ||||||||| ||||    
T  37685242 tgatttcaacaagttcatttagtattatataaaaattaaattttcaaatggcatgtgtcatgctgttttggtgtcacaattgataaaagaa 37685152  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 388 - 438
Target Start/End: Original strand, 46885285 - 46885336
Alignment:
Q  388 caaataagtatgggtgttatttt-tggttgattagaacatgattaaatgaat 438  Q
    ||||||||||||||| ||||||| |||||||||| |||||||||||||||||    
T  46885285 caaataagtatgggtattattttttggttgattataacatgattaaatgaat 46885336  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 136 - 267
Target Start/End: Original strand, 7498475 - 7498609
Alignment:
Q  136 atggtaatatataccatgaaagtttctgaaaagtttaa--tgtttgatttcaaccatttcatttattattctatgaaatttaaattttcaaatggtatat 233  Q
    |||||| ||||| |||| |||| || |||||||||  |  ||| |||||||||| | |||||||| |||  ||| ||| |||||||||||||||| || |    
T  7498475 atggtattatatcccataaaagattgtgaaaagttgcaattgtgtgatttcaacaagttcatttagtatcatataaaaattaaattttcaaatggcatgt 7498574  T
Q  234 gtcgtgcagttttggtgtca-aattgataagagaa 267  Q
    ||| ||| |||||||||||| ||||||||||||||    
T  7498575 gtcatgctgttttggtgtcacaattgataagagaa 7498609  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 375 - 441
Target Start/End: Complemental strand, 21546088 - 21546021
Alignment:
Q  375 ggagaagcagccacaaataagtatgggtgttattttt-ggttgattagaacatgattaaatgaatatt 441  Q
    ||||||| ||||||||||| ||||| ||  ||||||| ||||||||| ||||||||||||||||||||    
T  21546088 ggagaagtagccacaaatatgtatgagtactattttttggttgattataacatgattaaatgaatatt 21546021  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 490 - 562
Target Start/End: Original strand, 7498691 - 7498763
Alignment:
Q  490 gaggcttattttaattttgcttcgtgtgaaggatgttttatatagtcaatagacattatactttattgacttg 562  Q
    |||||||||||  ||||| ||  ||||| ||||||||||||| || |||||||| |||| |||||||||||||    
T  7498691 gaggcttatttagattttactatgtgtgtaggatgttttataaagccaatagaccttatgctttattgacttg 7498763  T

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