View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17239_low_7 (Length: 529)
Name: NF17239_low_7
Description: NF17239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17239_low_7 |
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| [»] scaffold0133 (2 HSPs) |
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| [»] scaffold0256 (3 HSPs) |
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Alignment Details
Target: scaffold0133 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: scaffold0133
Description:
Target: scaffold0133; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 116 - 518
Target Start/End: Complemental strand, 9909 - 9509
Alignment:
| Q |
116 |
cacttgccaacttgatgccatcccaccatacttgatccacttgaacttcaggtacactgccaaacttgaaatattaaataataattagtattacaattat |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
9909 |
cacttgccaacttgatgccatcccaccatacttgatccacttgcacttcaggtacactgccaa-cttgaaatattaaataataattagtattacaattat |
9811 |
T |
|
| Q |
216 |
ttggtattggattctctttgatgaaatctaggccacacaagaacaaatgaacgagcatgatgttgtttcataagataagttttccaannnnnnnnnnnnn |
315 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9810 |
ttggtattggattttctttgatgaaatctaggccacacaagaacaaatgaacgagcatgatgttgtttcataagataagttttccaa-ttttgttttttt |
9712 |
T |
|
| Q |
316 |
nnnnnnnatggccatgtgccttcacagcttgnnnnnnnccaccgtcattcactaattatttatttttctatagcagccaattttgacatgttgcagaaga |
415 |
Q |
| |
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||||||||||||||||| |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9711 |
ccctttcatggccatgtgccttcaacacttgttttttcccactgtcattcactaattatttatttttctatagcagccaattttgacatgttgcagaaga |
9612 |
T |
|
| Q |
416 |
actacatccactgatttaatatataatctttgaaaacaaataacaactcatatttcatcttcctagagcaaagtcatctccaatccaaacaactttgatt |
515 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
9611 |
actacatccactgatttaatatataatctttgaaaacaaataacaactcatatttcatcttcctagagcaaaatcatctccaatccaaacaactttgatt |
9512 |
T |
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| Q |
516 |
cat |
518 |
Q |
| |
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||| |
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|
| T |
9511 |
cat |
9509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0133; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 103 - 518
Target Start/End: Complemental strand, 14261 - 13857
Alignment:
| Q |
103 |
cagctaaattatacacttgccaacttgatgccatcccaccatacttgatccacttgaacttcaggtacactgccaaacttgaaatattaaataataatta |
202 |
Q |
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|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
14261 |
cagctaaattatacacttgccaacttgataccatcccaccatacttgatccacttgcacttcaggtacactgccaa-cttgaaatattaaataataatta |
14163 |
T |
|
| Q |
203 |
gtattacaattatttggtattggattctctttgatgaaatctaggccacacaagaacaaatgaacgagcatgatgttgtttcataagataagttttccaa |
302 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |
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| T |
14162 |
gtattacaattatttggtattggattctctttgacgaaatctaggccacacaagaacaaatgaacggtcatgatgttgtttcatatgataagttttccaa |
14063 |
T |
|
| Q |
303 |
nnnnnnnnnnnnnnnnnnnnatggccatgtgccttcacagcttgnnnnnnnccaccgtcattcactaattatttatttttctatagcagccaattttgac |
402 |
Q |
| |
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||||||||||||||||||| |||| | || |||||||||||||||||||||||||||||||||||||| |
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| T |
14062 |
-ttttgtttttttccttttcatggccatgtgccttcacaacttgttttttcctactgtcattcactaattatttatttttctatagcagccaat------ |
13970 |
T |
|
| Q |
403 |
atgttgcagaagaactacatccactgatttaatatataatctttgaaaacaaataacaactcatatttcatcttcctagagcaaagtcatctccaatcca |
502 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
13969 |
---ttggagaagaactacatccactgatttaatatataatctttgaaaacaaataacaactcatatttcatcttcctagagcaaaatcatctccaatcca |
13873 |
T |
|
| Q |
503 |
aacaactttgattcat |
518 |
Q |
| |
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|||||||||||||||| |
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| T |
13872 |
aacaactttgattcat |
13857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0256 (Bit Score: 178; Significance: 9e-96; HSPs: 3)
Name: scaffold0256
Description:
Target: scaffold0256; HSP #1
Raw Score: 178; E-Value: 9e-96
Query Start/End: Original strand, 145 - 478
Target Start/End: Complemental strand, 10497 - 10169
Alignment:
| Q |
145 |
acttgatccacttgaacttcaggtacactgccaaacttgaaatattaaataataattagtattacaattatttggtattggattctctttgatgaaatct |
244 |
Q |
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||||| |||||||| |||| |||||||||||||| |||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
10497 |
acttgctccacttgcacttgaggtacactgccaa-cttgaaatattaaataat---tagtattacaattatatggtattggattctctttgatgaaatct |
10402 |
T |
|
| Q |
245 |
aggccacacaagaacaaatgaacgagcatgatgttgtttcataagataagttttccaannnnnnnnnnnnnnnnnnnnatggccatgtgccttcacagct |
344 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| ||||||||||||||||||| || |
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| T |
10401 |
aggccacacaagaacaaatgaacgggcatgatgttgttacataagataagttttccaa-ttttttttttttccttttcatggccatgtgccttcacaact |
10303 |
T |
|
| Q |
345 |
tgnnnnnnnccaccgtcattcactaattatttatttttctatagcagccaattttgacatgttgcagaagaactacatccactgatttaatatataatct |
444 |
Q |
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|| |||| ||||||||||||||||||| ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
10302 |
tgttttttgccactgtcattcactaattatttaattttctatagcagtcaattttgacatgttgcaaaagaactacatccactgatttaatatataatct |
10203 |
T |
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| Q |
445 |
ttgaaaacaaataacaactcatatttcatcttcc |
478 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| |
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| T |
10202 |
ttgaaaacaaataacaacgcatatttcatcttcc |
10169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0256; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 64 - 122
Target Start/End: Complemental strand, 10547 - 10492
Alignment:
| Q |
64 |
aatagatatagatgaaatttcatattccagaccaaacagcagctaaattatacacttgc |
122 |
Q |
| |
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||||||||||| |||||||||||||||| ||||||| |||||||||||||||||||| |
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| T |
10547 |
aatagatatagttgaaatttcatattcctgaccaaa---cagctaaattatacacttgc |
10492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0256; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 10610 - 10564
Alignment:
| Q |
18 |
agaaagacgccaagcaaggatatatacctattattttgagataaacaatag |
68 |
Q |
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|||||||||||||| ||||||| ||||||||||||||||||||||||| |
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| T |
10610 |
agaaagacgccaagaaaggata----cctattattttgagataaacaatag |
10564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 111; Significance: 9e-56; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 372 - 518
Target Start/End: Complemental strand, 16782253 - 16782107
Alignment:
| Q |
372 |
tatttatttttctatagcagccaattttgacatgttgcagaagaactacatccactgatttaatatataatctttgaaaacaaataacaactcatatttc |
471 |
Q |
| |
|
||||| ||||||||||||| ||||| || ||| ||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
16782253 |
tatttttttttctatagcaaccaatattcacaagttgcagaaaaactacatccactgatttaatagataatctttgaaaacaaataacaactcatatttc |
16782154 |
T |
|
| Q |
472 |
atcttcctagagcaaagtcatctccaatccaaacaactttgattcat |
518 |
Q |
| |
|
|||||||||||||||||||||||| |||| ||||||||||||||||| |
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| T |
16782153 |
atcttcctagagcaaagtcatctctaatctaaacaactttgattcat |
16782107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 195 - 262
Target Start/End: Original strand, 16875998 - 16876065
Alignment:
| Q |
195 |
aataattagtattacaattatttggtattggattctctttgatgaaatctaggccacacaagaacaaa |
262 |
Q |
| |
|
|||||||||||||| |||||||| | |||||||||| | |||||||||||||||||||||||||| |
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|
| T |
16875998 |
aataattagtattaatattatttgtgactggattctctccggtgaaatctaggccacacaagaacaaa |
16876065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 396 - 505
Target Start/End: Original strand, 16867041 - 16867150
Alignment:
| Q |
396 |
ttttgacatgttgcagaagaactacatccactgatttaatatataatctttgaaaacaaataacaactcatatttcatcttcctagagcaaagtc-atct |
494 |
Q |
| |
|
|||||||| |||||| |||||| || |||| || |||||| |||| | ||||||||||||||||| |||| |||| ||||| | ||||||||| |||| |
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| T |
16867041 |
ttttgacaagttgcatcagaactgcaaccaccgagttaataaataacccttgaaaacaaataacaaagcata-ttcaacttccaaaagcaaagtctatct |
16867139 |
T |
|
| Q |
495 |
ccaatccaaac |
505 |
Q |
| |
|
|||| |||||| |
|
|
| T |
16867140 |
ccaaaccaaac |
16867150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 195 - 263
Target Start/End: Complemental strand, 16782985 - 16782917
Alignment:
| Q |
195 |
aataattagtattacaattatttggtattggattctctttgatgaaatctaggccacacaagaacaaat |
263 |
Q |
| |
|
||||||||||||||| |||||||| | |||||||||| || |||| |||||| ||| | ||||||||| |
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|
| T |
16782985 |
aataattagtattactattatttgtgactggattctctctggtgaagtctaggtcaccctagaacaaat |
16782917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 84; Significance: 1e-39; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 382 - 505
Target Start/End: Original strand, 38938380 - 38938502
Alignment:
| Q |
382 |
tctatagcagccaattttgacatgttgcagaagaactacatccactgatttaatatataatctttgaaaacaaataacaactcatatttcatcttcctag |
481 |
Q |
| |
|
|||| |||||||||| |||||| |||||||||||||||||||||||||||||||| | |||||||||||| ||||||| || |||||||||||||||||| |
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|
| T |
38938380 |
tctacagcagccaatattgacaagttgcagaagaactacatccactgatttaatagacaatctttgaaaaaaaataactacacatatttcatcttcctag |
38938479 |
T |
|
| Q |
482 |
agcaaagtcatctccaatccaaac |
505 |
Q |
| |
|
||||||| |||||||||||||||| |
|
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| T |
38938480 |
agcaaag-catctccaatccaaac |
38938502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 451 - 505
Target Start/End: Original strand, 11983113 - 11983167
Alignment:
| Q |
451 |
acaaataacaactcatatttcatcttcctagagcaaagtcatctccaatccaaac |
505 |
Q |
| |
|
|||||||| ||| |||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
11983113 |
acaaataataacgcatatttcatcttcatagagcaaagtcatctccaatccaaac |
11983167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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