View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1723_low_4 (Length: 450)
Name: NF1723_low_4
Description: NF1723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1723_low_4 |
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| [»] scaffold0734 (1 HSPs) |
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Alignment Details
Target: scaffold0734 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: scaffold0734
Description:
Target: scaffold0734; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 13 - 435
Target Start/End: Original strand, 593 - 1015
Alignment:
| Q |
13 |
gagacaaaggttgctacttgtgactgccagctttttcaatttatgggattgctatgtaggcatatcttggtgatttttcatgcaaaaaatgttgcagaaa |
112 |
Q |
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| T |
593 |
gagacaaaggttgctacttgtgactgtcagctttttcaattgatgggattgctatgtaggcatatcttggtgatttttcatgcaaaaaatgttgcagaaa |
692 |
T |
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| Q |
113 |
ttccagacatgtatattttaaagcgttggacaaaggatgctaacaaaggtgctgtgtttattgaagatggaccagagtcttcctctacaggaaactcatc |
212 |
Q |
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| T |
693 |
ttccagacatgtatattttaaagcgttggacaaaggatgctaacaaaggtgttgtgtttattgaagatggaccaaagtcttcctctacaggaaactcatc |
792 |
T |
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| Q |
213 |
aactttgcgaagtttacatgtacacaaacaagcaagtttgttacctgatcttgcagcaaaatctgagaaaatatataagctgatatcatctgatttggag |
312 |
Q |
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| T |
793 |
aactttgcaaagtttacatgtacacaaacaagcaagtttgttacctgatcttgcagcaaaatctgagaaaatatataagctgatatcatctgatttggag |
892 |
T |
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| Q |
313 |
gaaacatacaaaaaagctttgataatggaagctgaattagacaatgagagcgacataattcctccagatgcaagttgtcaaaatctgatacataagcaac |
412 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
893 |
gaaacatacaaaaaagctttgataatggaagctgaattagacaatgagagcgacataattcctccagatgcaagttgtcaaaatctgatacatgagcaac |
992 |
T |
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| Q |
413 |
caagtgagtcttcagaaccaatt |
435 |
Q |
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| T |
993 |
caagtgagtcttcagaaccaatt |
1015 |
T |
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