View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1724-Insertion-1 (Length: 888)
Name: NF1724-Insertion-1
Description: NF1724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1724-Insertion-1 |
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Alignment Details
Target: chr4 (Bit Score: 453; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 8 - 577
Target Start/End: Original strand, 34076768 - 34077337
Alignment:
| Q |
8 |
caaactctgtttacgtggtccacaccaaatcaaccacgtaaaaaaccacacctttcttcttttgttcaatctcaaacactgttttatccattacccttta |
107 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34076768 |
caaactctgtttaagtggtccacaccaaatcaaccacgtaaaaaaccacacctttcttcttttgttcaatctcaaacactgttttatccattacccttta |
34076867 |
T |
|
| Q |
108 |
tgcnnnnnnnnnnnnnnnnatgatcatgatcatgataatgtgaagtgagnnnnnnnggtatattgtgttgcttgctgcatagtgaaggtttcatcttttt |
207 |
Q |
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||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34076868 |
tgctttttctttttcttttatgatcatgatcatgataatgtgaagtgagtttttttggtatattgtgttgcttgctgcatagtgaaggtttcatcttttt |
34076967 |
T |
|
| Q |
208 |
aagcaaatggaccgacctgcgaacgttgttgggccgggaatggacatgccgattatgcatgatagtgatcgctatgaacttgttcgtgatattggttctg |
307 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34076968 |
aagtaaatggaccgacctgcgaacgttgttgggccgggaatggacatgctgattatgcatgatagtgatcgctatgaacttgttcgtgatattggttctg |
34077067 |
T |
|
| Q |
308 |
gtaattttggagttgctaggcttatgagggacaaacaaactgaggaacttgttgctgttaagtatattgagagaggtgaaaaggttcatgtcttaattct |
407 |
Q |
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| T |
34077068 |
gtaattttggagttgctaggcttatgagggacaaacaaactgaggaacttgttgctgttaagtatattgagagaggtgaaaaggttcatgtcttaattct |
34077167 |
T |
|
| Q |
408 |
ttagtccannnnnnnnatcttgttttagaagaaactttctatttttgtttgtgcatgtcaattaagattatgcttaattaagtgtgtgtggatggaatgg |
507 |
Q |
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| T |
34077168 |
ttaggccattttttttatcttgttttagaagaaactttctatttttgtttgtgcatgtcaattaagattatgcttaattaagtgtgtgtggatggaatgg |
34077267 |
T |
|
| Q |
508 |
aacaagacaatgaatgagtcagtattgtcactattttggttctcgtgtatgatttggatagtttgttttg |
577 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |
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| T |
34077268 |
aacaagacaatgaatgagtcagtattgtcactatttggattctcgtgtatgatttggatagtttgttttg |
34077337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 573 - 888
Target Start/End: Original strand, 34077367 - 34077683
Alignment:
| Q |
573 |
ttttgtaattgttttcataggattcatggtctaagcattttgattaatagcttggattgtcatgcgagtcttggataaattgttgttttaagttgtttaa |
672 |
Q |
| |
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| T |
34077367 |
ttttgtaattgttttcataggattcatggtctaagcattttgattaatagcttggattgccatgcgagtcttggataaattgttgttttaagttgtttaa |
34077466 |
T |
|
| Q |
673 |
gtacagagggaa-ttaatatttctttgtatttctttacagattgatgaaaatgtacagagagaaattataaaccatagatcattgaggcatcccaatatt |
771 |
Q |
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| T |
34077467 |
gtacagagggaaattaatatttctttgtatttctttacagattgatgaaaatgtacagagagaaattataaaccatagatcattgaggcatcccaatatt |
34077566 |
T |
|
| Q |
772 |
gtcaggttcaaggaggtttgaacaattgaaatgtcttattatcttatagattacttctagttcctatcttagaagtattataattagtcttaatttaact |
871 |
Q |
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|||||||||||||||||||||||||| | ||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34077567 |
gtcaggttcaaggaggtttgaacaatagcaatgtcttattatcttatatatcacttctagttcctatcttagaagtattataattagtcttaatttaact |
34077666 |
T |
|
| Q |
872 |
atgtatgtgactttagg |
888 |
Q |
| |
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||||||||||||||||| |
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| T |
34077667 |
atgtatgtgactttagg |
34077683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 78; Significance: 7e-36; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 244 - 393
Target Start/End: Original strand, 12308673 - 12308822
Alignment:
| Q |
244 |
ggaatggacatgccgattatgcatgatagtgatcgctatgaacttgttcgtgatattggttctggtaattttggagttgctaggcttatgagggacaaac |
343 |
Q |
| |
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|||||||| || | |||||||||||| |||||| | ||||| ||||| ||||||||||||||||| ||||||||||| |||||||||||||| || |||| |
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| T |
12308673 |
ggaatggatatacagattatgcatgagagtgatagatatgagcttgtacgtgatattggttctgggaattttggagtggctaggcttatgagagataaac |
12308772 |
T |
|
| Q |
344 |
aaactgaggaacttgttgctgttaagtatattgagagaggtgaaaaggtt |
393 |
Q |
| |
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| ||| | ||||||||||||| |||||||||||||||||||| |||||| |
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| T |
12308773 |
acactaatcaacttgttgctgtcaagtatattgagagaggtgataaggtt |
12308822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 699 - 789
Target Start/End: Original strand, 12309257 - 12309347
Alignment:
| Q |
699 |
tatttctttacagattgatgaaaatgtacagagagaaattataaaccatagatcattgaggcatcccaatattgtcaggttcaaggaggtt |
789 |
Q |
| |
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| T |
12309257 |
tattttttaacagatagatgaaaatgtacaaagggaaattataaatcatagatcactgaggcatcccaatattgtcaggttcaaggaggtt |
12309347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 709 - 789
Target Start/End: Original strand, 6709541 - 6709621
Alignment:
| Q |
709 |
cagattgatgaaaatgtacagagagaaattataaaccatagatcattgaggcatcccaatattgtcaggttcaaggaggtt |
789 |
Q |
| |
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||||||||||||||||| |||||||||| || || ||||| || ||||| ||||| |||||||||||||| ||||||||| |
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| T |
6709541 |
cagattgatgaaaatgttaagagagaaataatcaatcataggtctttgagacatcctaatattgtcaggtttaaggaggtt |
6709621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 709 - 789
Target Start/End: Complemental strand, 27107794 - 27107714
Alignment:
| Q |
709 |
cagattgatgaaaatgtacagagagaaattataaaccatagatcattgaggcatcccaatattgtcaggttcaaggaggtt |
789 |
Q |
| |
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||||||||||| ||||| || || ||||| || |||||||||||||||| |||||| |||||||| |||||||| |||||| |
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| T |
27107794 |
cagattgatgataatgtccaaagggaaatcatgaaccatagatcattgaagcatcctaatattgttaggttcaaagaggtt |
27107714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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