View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17240_low_2 (Length: 336)

Name: NF17240_low_2
Description: NF17240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17240_low_2
NF17240_low_2
[»] chr2 (7 HSPs)
chr2 (170-329)||(41524975-41525135)
chr2 (168-320)||(41524793-41524945)
chr2 (168-261)||(41524629-41524722)
chr2 (14-125)||(41524476-41524586)
chr2 (14-125)||(41524645-41524756)
chr2 (14-125)||(41524809-41524930)
chr2 (168-261)||(41524460-41524552)
[»] chr3 (5 HSPs)
chr3 (168-320)||(3175663-3175818)
chr3 (168-320)||(3175846-3176004)
chr3 (202-333)||(3175517-3175648)
chr3 (14-97)||(3175679-3175765)
chr3 (14-67)||(3175862-3175915)
[»] chr5 (5 HSPs)
chr5 (174-323)||(20964054-20964209)
chr5 (182-320)||(20964243-20964381)
chr5 (14-98)||(20964295-20964379)
chr5 (238-311)||(20963970-20964043)
chr5 (14-98)||(20964109-20964199)
[»] chr1 (5 HSPs)
chr1 (168-326)||(24541041-24541202)
chr1 (174-320)||(24540867-24541013)
chr1 (14-98)||(24540877-24540961)
chr1 (238-311)||(24541210-24541283)
chr1 (14-60)||(24541057-24541103)


Alignment Details
Target: chr2 (Bit Score: 121; Significance: 6e-62; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 170 - 329
Target Start/End: Original strand, 41524975 - 41525135
Alignment:
Q  170 ggtaaggaggatgtaaaggagtgtgaatcggaggcttaataggggcatgagctggagagtgatgacgatgatgggttgggcg-ttttgcagggaaacgag 268  Q
    ||||| ||||||||||||||||||||| | ||||||||||||||||||||||| |||||||||||||||||||||||||| | |||||||||||||||||    
T  41524975 ggtaaagaggatgtaaaggagtgtgaaccagaggcttaataggggcatgagctagagagtgatgacgatgatgggttggggggttttgcagggaaacgag 41525074  T
Q  269 aatgtaaaggagtgtgaacatgtgaaggggtatgggatggtgaatgatgttgatgttgatg 329  Q
    |||||||||||||||||||||| ||||||||| |||||||||||||||||||||| |||||    
T  41525075 aatgtaaaggagtgtgaacatgcgaaggggtaggggatggtgaatgatgttgatgctgatg 41525135  T

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Target: chr2; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 168 - 320
Target Start/End: Original strand, 41524793 - 41524945
Alignment:
Q  168 agggtaaggaggatgtaaaggagtgtgaatcggaggcttaataggggcatgagctggagagtgatgacgatgatgggttgggcgttttgcagggaaacga 267  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||  ||||    
T  41524793 agggtaaggaggatgtaaaggagtgtgaaccggaggcttaataggggcatgagctggagagtgatgacgatgatgggttgggggttttgcagggtgacga 41524892  T
Q  268 gaatgtaaaggagtgtgaacatgtgaaggggtatgggatggtgaatgatgttg 320  Q
    | || ||||||||| |||||||| ||||| | | |||||||||| || |||||    
T  41524893 ggatataaaggagtatgaacatgggaaggagcaggggatggtgagtggtgttg 41524945  T

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Target: chr2; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 168 - 261
Target Start/End: Original strand, 41524629 - 41524722
Alignment:
Q  168 agggtaaggaggatgtaaaggagtgtgaatcggaggcttaataggggcatgagctggagagtgatgacgatgatgggttgggcgttttgcaggg 261  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  41524629 agggtaaggaggatgtaaaggagtgtgaaccggaggcttaataggggcatgagctggagagtgatgacgatgatgggttgggggttttgcaggg 41524722  T

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Target: chr2; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 14 - 125
Target Start/End: Original strand, 41524476 - 41524586
Alignment:
Q  14 aaaggtgtgtgaaccggaggcttaataggggtttgagcaggagagtgacgatgacaatggattgggggttttgcagggtgacgagagtatgaacatggga 113  Q
    |||||||||||||| |||| |||||||||| ||||||||||||||||| |||||| |||| ||||||||||||||||||||| |||||||||||||||||    
T  41524476 aaaggtgtgtgaac-ggagacttaatagggatttgagcaggagagtgatgatgacgatgggttgggggttttgcagggtgacaagagtatgaacatggga 41524574  T
Q  114 aggagcagggga 125  Q
    ||||||||||||    
T  41524575 aggagcagggga 41524586  T

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Target: chr2; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 14 - 125
Target Start/End: Original strand, 41524645 - 41524756
Alignment:
Q  14 aaaggtgtgtgaaccggaggcttaataggggtttgagcaggagagtgacgatgacaatggattgggggttttgcagggtgacgagagtatgaacatggga 113  Q
    ||||| |||||||||||||||||||||||||  ||||| ||||||||| || ||  |||| ||||||||||||||||||||| |||||||||||||||||    
T  41524645 aaaggagtgtgaaccggaggcttaataggggcatgagctggagagtgatgacgatgatgggttgggggttttgcagggtgacaagagtatgaacatggga 41524744  T
Q  114 aggagcagggga 125  Q
    ||||||||||||    
T  41524745 aggagcagggga 41524756  T

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Target: chr2; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 14 - 125
Target Start/End: Original strand, 41524809 - 41524930
Alignment:
Q  14 aaaggtgtgtgaaccggaggcttaataggggtttgagcaggagagtgacgatgacaatggattgggggttttgcagggtgacga----------gagtat 103  Q
    ||||| |||||||||||||||||||||||||  ||||| ||||||||| || ||  |||| |||||||||||||||||||||||          ||||||    
T  41524809 aaaggagtgtgaaccggaggcttaataggggcatgagctggagagtgatgacgatgatgggttgggggttttgcagggtgacgaggatataaaggagtat 41524908  T
Q  104 gaacatgggaaggagcagggga 125  Q
    ||||||||||||||||||||||    
T  41524909 gaacatgggaaggagcagggga 41524930  T

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Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 168 - 261
Target Start/End: Original strand, 41524460 - 41524552
Alignment:
Q  168 agggtaaggaggatgtaaaggagtgtgaatcggaggcttaataggggcatgagctggagagtgatgacgatgatgggttgggcgttttgcaggg 261  Q
    ||||| ||||||| ||||||| ||||||| ||||| ||||||||||   ||||| |||||||||||| || ||||||||||| |||||||||||    
T  41524460 agggtgaggaggaagtaaaggtgtgtgaa-cggagacttaatagggatttgagcaggagagtgatgatgacgatgggttgggggttttgcaggg 41524552  T

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Target: chr3 (Bit Score: 82; Significance: 1e-38; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 168 - 320
Target Start/End: Original strand, 3175663 - 3175818
Alignment:
Q  168 agggtaaggaggatgtaaaggagtgtgaatcggaggcttaataggggcatgagctggagag---tgatgacgatgatgggttgggcgttttgcagggaaa 264  Q
    ||||| ||||||||||||||||||||||| || ||||||||||||||||||||| ||||||   |||||| |||||||||||||| |||||||||||  |    
T  3175663 agggtgaggaggatgtaaaggagtgtgaaacgaaggcttaataggggcatgagcaggagagtgatgatgatgatgatgggttgggggttttgcagggtga 3175762  T
Q  265 cgagaatgtaaaggagtgtgaacatgtgaaggggtatgggatggtgaatgatgttg 320  Q
    |||  ||||||||||||||||||||| |||||||   |||||||||| ||||||||    
T  3175763 cgatgatgtaaaggagtgtgaacatgggaaggggcgggggatggtgagtgatgttg 3175818  T

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Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 168 - 320
Target Start/End: Original strand, 3175846 - 3176004
Alignment:
Q  168 agggtaaggaggatgtaaaggagtgtgaatcggaggcttaataggggcatgagctggagag------tgatgacgatgatgggttgggcgttttgcaggg 261  Q
    ||||| ||||||||||||||||||||||| |||||  ||||||||||||||||| ||||||      |||||| |||||||||||||  ||||||||||     
T  3175846 agggtgaggaggatgtaaaggagtgtgaaccggagttttaataggggcatgagcaggagagtgatgatgatgatgatgatgggttggaggttttgcagga 3175945  T
Q  262 aaacgagaatgtaaaggagtgtgaacatgtgaaggggtatgggatggtgaatgatgttg 320  Q
      ||||| ||||||||||||||||||||| ||||| | | |||||||||| ||||||||    
T  3175946 tgacgaggatgtaaaggagtgtgaacatgagaaggagcaagggatggtgagtgatgttg 3176004  T

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Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 202 - 333
Target Start/End: Original strand, 3175517 - 3175648
Alignment:
Q  202 ggcttaataggggcatgagctggagagtgatgacgatgatgggttgggcgttttgcagggaaacgagaatgtaaaggagtgtgaacatgtgaaggggtat 301  Q
    |||||||| ||||||||||| |||||||| ||| ||| |||||| ||  |||||  ||||  ||||| ||||||||||||||||||||| ||||||| |     
T  3175517 ggcttaatgggggcatgagcaggagagtggtgatgataatgggtgggtggttttttagggtgacgaggatgtaaaggagtgtgaacatgggaaggggcag 3175616  T
Q  302 gggatggtgaatgatgttgatgttgatgatgt 333  Q
    |||| ||||| |||||||| || || ||||||    
T  3175617 gggaaggtgagtgatgttggtggtggtgatgt 3175648  T

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Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 14 - 97
Target Start/End: Original strand, 3175679 - 3175765
Alignment:
Q  14 aaaggtgtgtgaaccggaggcttaataggggtttgagcaggagagtgacgatgacaatg---gattgggggttttgcagggtgacga 97  Q
    ||||| ||||||| || ||||||||||||||  ||||||||||||||| |||||  |||   | |||||||||||||||||||||||    
T  3175679 aaaggagtgtgaaacgaaggcttaataggggcatgagcaggagagtgatgatgatgatgatgggttgggggttttgcagggtgacga 3175765  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 67
Target Start/End: Original strand, 3175862 - 3175915
Alignment:
Q  14 aaaggtgtgtgaaccggaggcttaataggggtttgagcaggagagtgacgatga 67  Q
    ||||| |||||||||||||  ||||||||||  ||||||||||||||| |||||    
T  3175862 aaaggagtgtgaaccggagttttaataggggcatgagcaggagagtgatgatga 3175915  T

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Target: chr5 (Bit Score: 81; Significance: 4e-38; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 174 - 323
Target Start/End: Complemental strand, 20964209 - 20964054
Alignment:
Q  174 aggaggatgtaaaggagtgtgaatcggaggcttaataggggcatgagctggagagtgatgacgatgatg------ggttgggcgttttgcagggaaacga 267  Q
    |||| |||||||||||||||||| ||||||||||||||||||||| || |||||||||||| |||||||      ||||||| |||||||||||  ||||    
T  20964209 aggatgatgtaaaggagtgtgaaccggaggcttaataggggcatgtgcgggagagtgatgatgatgatgatgatgggttgggggttttgcagggtgacga 20964110  T
Q  268 gaatgtaaaggagtgtgaacatgtgaaggggtatgggatggtgaatgatgttgatg 323  Q
    | ||||| ||||||||||||||| ||||| ||| ||||||||||||||||||||||    
T  20964109 ggatgtataggagtgtgaacatgggaaggagtaggggatggtgaatgatgttgatg 20964054  T

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Target: chr5; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 182 - 320
Target Start/End: Complemental strand, 20964381 - 20964243
Alignment:
Q  182 gtaaaggagtgtgaatcggaggcttaataggggcatgagctggagagtgatgacgatgatgggttgggcgttttgcagggaaacgagaatgtaaaggagt 281  Q
    ||||||| |||||||  ||||| ||||||||||||||||| |||||||||||| ||| |||||| ||| |||||||||||  ||||| ||||||||||||    
T  20964381 gtaaaggtgtgtgaactggaggtttaataggggcatgagcaggagagtgatgatgataatgggtggggggttttgcagggtgacgaggatgtaaaggagt 20964282  T
Q  282 gtgaacatgtgaaggggtatgggatggtgaatgatgttg 320  Q
    ||||| |||||||||||   |||||||||| ||||||||    
T  20964281 gtgaaaatgtgaaggggcgggggatggtgagtgatgttg 20964243  T

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Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 14 - 98
Target Start/End: Complemental strand, 20964379 - 20964295
Alignment:
Q  14 aaaggtgtgtgaaccggaggcttaataggggtttgagcaggagagtgacgatgacaatggattgggggttttgcagggtgacgag 98  Q
    |||||||||||||| ||||| ||||||||||  ||||||||||||||| ||||| ||||| | ||||||||||||||||||||||    
T  20964379 aaaggtgtgtgaactggaggtttaataggggcatgagcaggagagtgatgatgataatgggtggggggttttgcagggtgacgag 20964295  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 238 - 311
Target Start/End: Complemental strand, 20964043 - 20963970
Alignment:
Q  238 tgatgggttgggcgttttgcagggaaacgagaatgtaaaggagtgtgaacatgtgaaggggtatgggatggtga 311  Q
    |||||||| ||| |||| ||||||  | ||| ||||||||||||||||||||| ||||| | ||||||||||||    
T  20964043 tgatgggtcgggggtttagcagggtgaggaggatgtaaaggagtgtgaacatgagaaggtgcatgggatggtga 20963970  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 14 - 98
Target Start/End: Complemental strand, 20964199 - 20964109
Alignment:
Q  14 aaaggtgtgtgaaccggaggcttaataggggtttgagcaggagag------tgacgatgacaatggattgggggttttgcagggtgacgag 98  Q
    ||||| |||||||||||||||||||||||||  || || ||||||      ||| |||||  |||| ||||||||||||||||||||||||    
T  20964199 aaaggagtgtgaaccggaggcttaataggggcatgtgcgggagagtgatgatgatgatgatgatgggttgggggttttgcagggtgacgag 20964109  T

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Target: chr1 (Bit Score: 76; Significance: 4e-35; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 168 - 326
Target Start/End: Original strand, 24541041 - 24541202
Alignment:
Q  168 agggtaaggaggatgtaaaggagtgtgaatcggaggcttaataggggcatgagctggagagtgatg---acgatgatgggttgggcgttttgcagggaaa 264  Q
    ||||| ||||||||||||||||||||||| ||||| ||||||||||| |||||| |||||||| ||   | ||||||| |||||| ||||||| |||  |    
T  24541041 agggtgaggaggatgtaaaggagtgtgaaccggagacttaataggggaatgagcaggagagtgttgttgatgatgatgagttgggggttttgctgggtga 24541140  T
Q  265 cgagaatgtaaaggagtgtgaacatgtgaaggggtatgggatggtgaatgatgttgatgttg 326  Q
    |||| ||||||||||| ||||||||| ||||| ||| |||||||||| ||||||||||||||    
T  24541141 cgaggatgtaaaggagggtgaacatgggaaggcgtaggggatggtgagtgatgttgatgttg 24541202  T

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Target: chr1; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 174 - 320
Target Start/End: Original strand, 24540867 - 24541013
Alignment:
Q  174 aggaggatgtaaaggagtgtgaatcggaggcttaataggggcatgagctggagagtgatgacgatgatgggttgggcgttttgcagggaaacgagaatgt 273  Q
    ||||||| |||||||  |||||| ||||||||||||||| ||||| || ||||| |||||| ||| |||||| ||| |||||||||||  ||||| ||||    
T  24540867 aggaggaagtaaaggtttgtgaaccggaggcttaataggagcatgggcaggagaatgatgatgataatgggtggggggttttgcagggtgacgaggatgt 24540966  T
Q  274 aaaggagtgtgaacatgtgaaggggtatgggatggtgaatgatgttg 320  Q
    ||||||||||||||||| ||||||| | |||||||||| ||||||||    
T  24540967 aaaggagtgtgaacatgggaaggggcaggggatggtgagtgatgttg 24541013  T

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Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 14 - 98
Target Start/End: Original strand, 24540877 - 24540961
Alignment:
Q  14 aaaggtgtgtgaaccggaggcttaataggggtttgagcaggagagtgacgatgacaatggattgggggttttgcagggtgacgag 98  Q
    |||||| |||||||||||||||||||||| |  || |||||||| ||| ||||| ||||| | ||||||||||||||||||||||    
T  24540877 aaaggtttgtgaaccggaggcttaataggagcatgggcaggagaatgatgatgataatgggtggggggttttgcagggtgacgag 24540961  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 238 - 311
Target Start/End: Original strand, 24541210 - 24541283
Alignment:
Q  238 tgatgggttgggcgttttgcagggaaacgagaatgtaaaggagtgtgaacatgtgaaggggtatgggatggtga 311  Q
    |||||||| ||| |||| ||||||  | ||| ||||||||||||||||||||| ||||| | ||||||||||||    
T  24541210 tgatgggtcgggggtttagcagggtgaggaggatgtaaaggagtgtgaacatgagaaggtgcatgggatggtga 24541283  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 60
Target Start/End: Original strand, 24541057 - 24541103
Alignment:
Q  14 aaaggtgtgtgaaccggaggcttaataggggtttgagcaggagagtg 60  Q
    ||||| ||||||||||||| |||||||||||  ||||||||||||||    
T  24541057 aaaggagtgtgaaccggagacttaataggggaatgagcaggagagtg 24541103  T

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