View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17241_high_11 (Length: 470)
Name: NF17241_high_11
Description: NF17241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17241_high_11 |
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Alignment Details
Target: chr7 (Bit Score: 415; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 14 - 440
Target Start/End: Complemental strand, 41702792 - 41702366
Alignment:
| Q |
14 |
agacatccgaaaccaacataaaccaaccaaaaacacctgctgctatcagagagccgaacagcagcaccagcagctgctgaaacctgcataaaacaacagc |
113 |
Q |
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| T |
41702792 |
agacatccgaaaccaacataaaccaaccaaaaacacctgctgctatcagagagccgaacagcagcaccagcagctgctgaaacctgcataaaacaacagc |
41702693 |
T |
|
| Q |
114 |
ttcggctgcaaagcagcgcccaaacctccctgcactgtcaagaaccagcagcagctgccactatgacagcaacacagcagaccaagcacacggcaacaca |
213 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
41702692 |
ttcggctgcaaagcagcgcccaaacctccctgcgctgtcaagaaccagcagcagctgccactatgacagcaacacagcagaccaagcacgcggcaacaca |
41702593 |
T |
|
| Q |
214 |
actgccaaagacagacaccgcaccaaaccagacctcgcaacagcaccaaccccctgaacctccgagcctcaccgctgcacagccagcaaggccaacaaaa |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
41702592 |
actgccaaagacagacaccgcaccaaaccagacctcgcaacagcaccaaccccctgaacctccgagcctcaccgctgtacagccagcaaggccaacaaaa |
41702493 |
T |
|
| Q |
314 |
gctggaaccgataactgacagctattatctcaataaacagtcccggggactccattcccattcataaaacaaacatcccggaacctaaaaatcatgtata |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41702492 |
gctggaaccgataactgacagctattatctcaataaacagtcccggggactccattcccattcataaaacaaacatcccggaacctaaaaatcatgtata |
41702393 |
T |
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| Q |
414 |
tttaaacatattttggatggttataat |
440 |
Q |
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||||||||||||||||||||||||||| |
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| T |
41702392 |
tttaaacatattttggatggttataat |
41702366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 348 - 388
Target Start/End: Original strand, 6316512 - 6316552
Alignment:
| Q |
348 |
aaacagtcccggggactccattcccattcataaaacaaaca |
388 |
Q |
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|||||||||||||| |||| |||||||||||||||||||| |
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| T |
6316512 |
aaacagtcccgggggttccactcccattcataaaacaaaca |
6316552 |
T |
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