View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17241_high_14 (Length: 455)
Name: NF17241_high_14
Description: NF17241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17241_high_14 |
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Alignment Details
Target: chr1 (Bit Score: 430; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 4 - 445
Target Start/End: Complemental strand, 48049285 - 48048844
Alignment:
| Q |
4 |
tttttcatagtttttctctacatctatcgactgatccaccacatatgtgatctattcttcttactatagaatctatagatttccttcacacatgtccaaa |
103 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48049285 |
tttttcatagtttttctctacatctatcgactgatccaccacatatgtgatctattcttcttactatagaatctatagatttccttcacacatgtccaaa |
48049186 |
T |
|
| Q |
104 |
ccagctaagtcgagatttaaccatcttattacaattggtgctagcttgctagcccaactccctctctttaatgttattgttcctattcctatctcgtgtt |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48049185 |
ccagctaagtcgagatttaaccatcttattacaattggtgctagcttgctagcccaactccctctctttaatgttattgttcctattcctatctcgtgtt |
48049086 |
T |
|
| Q |
204 |
tttctttgttatggatcctttctcgtctagtattgccactcatcaagtacagcatcctcatggacctcaatcctttttgtgttggctttttactacccaa |
303 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
48049085 |
tttctttgttatggatcctttctcgtctagtattgccactcatcaagtacagcatcctcatggacctcaatcctttttgtgctggctttttactacccaa |
48048986 |
T |
|
| Q |
304 |
cactctatctcatacaacaacacagctttttcatatgattataacagaaattagtcatcaattgaaattgaaaagggagagttcatgatattaggacata |
403 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48048985 |
cactctatctcatacaacaacacagctttttcatatgattataacagaaattagtcatcaattgaaattgaaaagggagagttcatgatattaggacata |
48048886 |
T |
|
| Q |
404 |
actttggttactggtacattcttcatgtatcacagcattcat |
445 |
Q |
| |
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||||||| |||| ||||||||||||||||||||||||||||| |
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| T |
48048885 |
actttggctactagtacattcttcatgtatcacagcattcat |
48048844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 2 - 406
Target Start/End: Complemental strand, 48040989 - 48040592
Alignment:
| Q |
2 |
attttttcatagtttttctctacatctatcgactgatccaccacatatgtgatctattcttcttactatagaatctatagatttccttcacacatgtcca |
101 |
Q |
| |
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|||||||||| ||||||||||||||| ||||||||| |||||| |||||||||||||| ||||||||| ||||||||||| |||||||||||| |
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| T |
48040989 |
attttttcatggtttttctctacatcaatcgactgaaccaccatccatgtgatctattctccttactata------atagatttcctccacacatgtcca |
48040896 |
T |
|
| Q |
102 |
aaccagctaagtcgagatttaaccatcttatt-acaattggtgctagcttgctagcccaactccctctctttaatgttattgttcctattcctatctcgt |
200 |
Q |
| |
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|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| |
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| T |
48040895 |
aaccagctaagtcgggatttaaccatcttatttacaattggtgctagcttgctagcccaacgtcctctctttaatgtgattgttcctattcctatcttta |
48040796 |
T |
|
| Q |
201 |
gtttttctttgtt----atggatcctttctcgtctagtattgccactcatcaagtacagcatcctcatggacctcaatcctttttgtgttggctttttac |
296 |
Q |
| |
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|||||| |||||| ||| ||||| |||||||||| ||||||||| | |||||||||||||||||||||| |||||| |||| ||||||||| |
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| T |
48040795 |
gtttttttttgtttgttatgaatcct-----gtctagtatttccactcatccaatacagcatcctcatggacctcagtcctttctgtgctggctttttgt |
48040701 |
T |
|
| Q |
297 |
tacccaacactctatctcatacaacaacacagctttttcatatgattataacagaaattagtcatcaattgaaattgaaaagggagagttcatgatatta |
396 |
Q |
| |
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||||||||||| |||||||| |||| || |||| ||||||||||||||||| |||||||||| | |||||| |||||||||| |||||||| |||| ||| |
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| T |
48040700 |
tacccaacactttatctcatgcaactacgcagc-ttttcatatgattataaaagaaattagttaccaattgtaattgaaaagtgagagttcgtgatgtta |
48040602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 51 - 445
Target Start/End: Original strand, 29813096 - 29813493
Alignment:
| Q |
51 |
tgatctattcttcttactatagaatctatagatttccttcacacatgtccaaaccagctaagtcgagatttaaccatcttat-tacaattggtgctagct |
149 |
Q |
| |
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|||| |||||| |||| || ||||| |||||||||||| ||||||||||||||||| |||| || |||||||| |||| ||| |||||| ||||||| | |
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| T |
29813096 |
tgatttattctccttattacagaatttatagatttcctccacacatgtccaaaccacctaaatctagatttaagcatcgtatatacaataggtgctaatt |
29813195 |
T |
|
| Q |
150 |
tgctagcccaactccctctctttaatg---ttattgttcctattcctatc-tcgt-gtttttctttgttatggatcctttctcgtctagtattgccactc |
244 |
Q |
| |
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|||| ||||| || |||||||||||| ||||| |||||||||| ||| || | ||||| ||||||| |||||||| ||||||||||||| || ||| |
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| T |
29813196 |
cgctaccccaattctctctctttaatggtattattattcctattcccatcttcatcttttttttttgttagggatccttcctcgtctagtatttcccctc |
29813295 |
T |
|
| Q |
245 |
atcaagtacagcatcctcatggacctcaatcctttttgtgttggctttttactacccaacactctatctcatacaacaacacagctttttcatatgatta |
344 |
Q |
| |
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||| | | ||||||||||||||||| ||||| ||||||||||||||||||||| ||||||| |||||| ||||||| || |||||||| ||||||| |
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| T |
29813296 |
atccattgcagcatcctcatggaccacaatcttttttgtgttggctttttact---caacacttcatctcagacaacaatgcaactttttcacatgatta |
29813392 |
T |
|
| Q |
345 |
taacagaaattagtcatcaattgaaattgaaaagggagagttcatgatattaggacataactttggttactggtacattcttcatgtatcacagcattca |
444 |
Q |
| |
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||| ||||| || | ||||||| |||| ||| ||||| || || | ||||||||| || | ||| |||| |||||| | |||||||||||||||||| |
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|
| T |
29813393 |
taaaagaaactatttgtcaattgtaattttaaatggagactttatcacattaggacaaaaatctggatactaatacattatacatgtatcacagcattca |
29813492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 145 - 356
Target Start/End: Complemental strand, 48053589 - 48053382
Alignment:
| Q |
145 |
tagcttgctagcccaactccctctctttaatgttattgttcctattcctatctc-gtgtttttctttgttatggatcctttctcgtctagtattgccact |
243 |
Q |
| |
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||||||||||||||||||| |||||||||||| ||| ||| ||||||||| | ||||| ||||||| || ||||||||||| | ||||| | || |
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| T |
48053589 |
tagcttgctagcccaactctctctctttaatgatat-----ctaatcctatctcggcttttttttttgttaggggtcctttctcgtttggtatttctgct |
48053495 |
T |
|
| Q |
244 |
catcaagtacagcatcctcatggacctcaatcctttttgtgttggctttttactacccaacactctatctcatacaacaacacagctttttcatatgatt |
343 |
Q |
| |
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||| ||| ||||||||||||| | |||||||||||| | ||||||||||||||||||||| | |||||||||||||| || |||||||| | |||| |
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| T |
48053494 |
catacagtgcagcatcctcatgaatctcaatccttttcatcttggctttttactacccaacagttcatctcatacaacaaagcaactttttcacaagatt |
48053395 |
T |
|
| Q |
344 |
ataacagaaatta |
356 |
Q |
| |
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| || |||||||| |
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| T |
48053394 |
aaaaaagaaatta |
48053382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 77 - 122
Target Start/End: Complemental strand, 48035348 - 48035303
Alignment:
| Q |
77 |
tatagatttccttcacacatgtccaaaccagctaagtcgagattta |
122 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| ||| |||||||| |
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|
| T |
48035348 |
tatagatttcctccacacatgtccaaaccagcaaagctgagattta |
48035303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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