View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17241_high_15 (Length: 452)
Name: NF17241_high_15
Description: NF17241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17241_high_15 |
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Alignment Details
Target: chr7 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 20 - 442
Target Start/End: Complemental strand, 19583608 - 19583187
Alignment:
| Q |
20 |
gactggacgtaatatgaggtgaaccgggataaataatttgtgtcatctcgcttcccttattttttacatttggtgtttatctttat-agttaaaagagaa |
118 |
Q |
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| T |
19583608 |
gactggacgtaatatggggtgaaccgggataaataatttgtgtcatctcgcttcccttattttttacatttggtgtttatctttatcagttaaaagagaa |
19583509 |
T |
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| Q |
119 |
ccaaacgctaaaagagaccaaaacaattaacaaccccctgcgcccccttttcnnnnnnnnnnnnngcgtttatgaccttcaaattctaagtttacttttt |
218 |
Q |
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| T |
19583508 |
ccaaacgctaaaagagaccaaaacaattaacaaccccctgcgccccctttt--ttttttttttttgcgtttatgaccttcaaattctaagtttacttttt |
19583411 |
T |
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| Q |
219 |
ccaacaatatcaacagtatttctttaacataaaattatactactttttattttgaatttattaattatcgatgaaaagataaattatgaaaattgaagtt |
318 |
Q |
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| T |
19583410 |
ccaacaatctcaacagtatttctttgacataaaattatactactttttattttgaatttattaattatcgatgaaaagataaattatgaaaattgaagtt |
19583311 |
T |
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| Q |
319 |
gatggatattgttagaaagaaaatatgaggctgatcggtatttaaatagaaattagaacttagaagtaggaaacaatctcgatatagttttaaaatggtc |
418 |
Q |
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| T |
19583310 |
gattgatattgttagaaagaaaatatgaggctgatcggtatttaaatagaaattagaacttagaagtaggaaacaatctcgatatagttttaaaatggtc |
19583211 |
T |
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| Q |
419 |
ttcattataaaggtacacattcat |
442 |
Q |
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| T |
19583210 |
ttcattataaaggtacacattcat |
19583187 |
T |
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