View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17241_high_19 (Length: 394)
Name: NF17241_high_19
Description: NF17241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17241_high_19 |
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Alignment Details
Target: chr5 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 16 - 324
Target Start/End: Complemental strand, 2325192 - 2324885
Alignment:
| Q |
16 |
atagaattaatcaaaactagtactaacattctcatcgagttcttcttgnnnnnnnncaaagtattctcatcgagttcaaattaaatctcctacattgtag |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
2325192 |
atagaattaatcaaaactagtactaacattctcatcgagttcttcttgaaaaaaa-caaagcattctcatcgagttcaaattaaatctcctacattgtag |
2325094 |
T |
|
| Q |
116 |
gttataatgtgttctagctataaaatatgagagcatcaatctagtgttaccgtacattcgcaaattgaagtgaacattttaacactaccaagcttagtga |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
2325093 |
gttataatgtgttctagctataaaatatgagagcatcaatctagtattaccgtacattcgcaaattgaagtgaacattttaacactaccgagcttagtga |
2324994 |
T |
|
| Q |
216 |
cacagacgtgataaaaaatatatccaaagaaataaactagtttacaccaatgaaaagatggtgatctcatgcactcactgcaagaattcttttcaaaagt |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2324993 |
cacagacgtgataaaaaatatatccaaagaaataaactagtttacaccaatgaaaagatggtgatctcatgcactcactgcaagaattcttttcaaaagt |
2324894 |
T |
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| Q |
316 |
tatcaattt |
324 |
Q |
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||||||||| |
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| T |
2324893 |
tatcaattt |
2324885 |
T |
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