View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17241_high_22 (Length: 358)
Name: NF17241_high_22
Description: NF17241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17241_high_22 |
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Alignment Details
Target: chr1 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 10 - 341
Target Start/End: Original strand, 49309205 - 49309537
Alignment:
| Q |
10 |
ttacaccaaatatttcattttctataactaaaagacacaccagacaccagcataacacatggaatactaacaaaatcttgttaaatatccatgtataatt |
109 |
Q |
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| T |
49309205 |
ttacaccaaatatttcattttctataactaaaagacacaccaggcactagcataacacatggaatactaacaaaatcttgttaaatatccatgtataatt |
49309304 |
T |
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| Q |
110 |
gcatttcaattacatgttatgagcgcttcaatcacaagagaaaaatattgaacaaataacaagagtatgaagaagtacacaatccacaaataccattgtg |
209 |
Q |
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| T |
49309305 |
gcatttcaattacatgttatgagcgcttcaatcacaagagaaaaatattgaacaaataacaagtgtatgaagaagtacacaatccacaaataccattgtg |
49309404 |
T |
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| Q |
210 |
taatactaaattgctaatatgcatggtaaaataatgattccaaacgataaagtgtaaacatacaaactgaaaagagtt-nnnnnnnnnntcacaaaaata |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
49309405 |
taatactaaattgctaatatgcatggtaaaataatgattccaaacgataaagtgtaaacatacaaactgaaaagagttaaaaaaaaaaatcacaaaaata |
49309504 |
T |
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| Q |
309 |
tttataatataccaattgcagtatactaagtac |
341 |
Q |
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| T |
49309505 |
tttataatataccaattgcagtatactaagtac |
49309537 |
T |
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