View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17241_high_31 (Length: 326)

Name: NF17241_high_31
Description: NF17241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17241_high_31
NF17241_high_31
[»] chr1 (23 HSPs)
chr1 (11-311)||(48049383-48049681)
chr1 (11-309)||(48041300-48041610)
chr1 (21-158)||(48040159-48040297)
chr1 (11-137)||(29812793-29812920)
chr1 (21-174)||(48055929-48056083)
chr1 (22-138)||(48053114-48053231)
chr1 (19-158)||(48042819-48042959)
chr1 (21-211)||(29813541-29813734)
chr1 (21-211)||(48050595-48050791)
chr1 (19-110)||(48035742-48035833)
chr1 (45-169)||(48054322-48054447)
chr1 (176-299)||(48054794-48054917)
chr1 (34-110)||(5126503-5126579)
chr1 (34-110)||(48033102-48033178)
chr1 (22-106)||(48034698-48034782)
chr1 (35-110)||(39972782-39972857)
chr1 (21-161)||(48048628-48048769)
chr1 (33-110)||(22908322-22908399)
chr1 (35-106)||(48042225-48042296)
chr1 (34-107)||(48054678-48054751)
chr1 (38-106)||(48050016-48050084)
chr1 (39-110)||(48036725-48036796)
chr1 (109-161)||(48056271-48056323)
[»] chr3 (7 HSPs)
chr3 (32-111)||(31125750-31125829)
chr3 (35-111)||(53107639-53107715)
chr3 (35-110)||(34974803-34974878)
chr3 (34-106)||(47565677-47565749)
chr3 (35-106)||(38930471-38930542)
chr3 (35-106)||(53682982-53683053)
chr3 (44-95)||(32170503-32170554)
[»] chr2 (7 HSPs)
chr2 (33-110)||(6796495-6796572)
chr2 (34-110)||(35926121-35926197)
chr2 (35-111)||(39990580-39990656)
chr2 (35-110)||(6801050-6801125)
chr2 (33-106)||(7181562-7181635)
chr2 (35-106)||(13326996-13327067)
chr2 (33-107)||(35920133-35920207)
[»] chr7 (4 HSPs)
chr7 (35-110)||(43920607-43920682)
chr7 (35-106)||(23780469-23780540)
chr7 (35-106)||(40706106-40706177)
chr7 (40-97)||(46064797-46064854)
[»] chr4 (3 HSPs)
chr4 (35-110)||(38393559-38393634)
chr4 (34-106)||(49152535-49152607)
chr4 (40-97)||(26929298-26929355)
[»] chr6 (6 HSPs)
chr6 (33-107)||(10754596-10754670)
chr6 (35-107)||(992441-992513)
chr6 (25-162)||(32678569-32678699)
chr6 (33-106)||(10750280-10750353)
chr6 (35-106)||(18613088-18613159)
chr6 (33-106)||(10748684-10748757)


Alignment Details
Target: chr1 (Bit Score: 274; Significance: 1e-153; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 11 - 311
Target Start/End: Original strand, 48049383 - 48049681
Alignment:
Q  11 cacagacaataacttttcatataagggcatttggtctagtggtatgattctcgctttgggtgcgagaggtcccgagttcgattctcggaatgcccctttt 110  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48049383 cacaaacaataacttttcatataagggcatttggtctagtggtatgattctcgctttgggtgcgagaggtcccgagttcgattctcggaatgcccctttt 48049482  T
Q  111 gaaggttaggaggttaactttccaatatattagttaaataccaataagctctgttttttgttttggttgaagatttggaatctgataaggttgacttatt 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48049483 gaaggttaggaggttaactttccaatatattagttaaataccaataagctctgttttttgttttggttgaagatttggaatctgataaggttgacttatt 48049582  T
Q  211 agttttttaagatccagaagctttcaagtttatatgcttttcatttcttaagatctggaagctgtcaagttttatctacatactagtgtatagtagtatc 310  Q
    ||  |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| |||    
T  48049583 ag--ttttaagatccagaagctttcaagtttatatgcttttcattttttaagatctggaagctgtcaagttttatctacatactagtgtctagtagcatc 48049680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 11 - 309
Target Start/End: Original strand, 48041300 - 48041610
Alignment:
Q  11 cacagacaataacttttcatataagggcatttggtctagtggtatgattctcgctttgggtgcgagaggtcccgagttcgattctcggaatgcccctttt 110  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||    
T  48041300 cacaaacaataacttttcatataagggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccctttt 48041399  T
Q  111 gaaggttaggaggttaactttccaatatatta-gttaaataccaataagctctgttttttgttttg---------------gttgaagatttggaatctg 194  Q
    || |||||     ||||||||||||||| ||| ||||||||| ||||||||||||||||| ||||                ||||||||| |||||||||    
T  48041400 gatggttat----ttaactttccaatattttaagttaaatacaaataagctctgtttttttttttttttttttttttttttgttgaagatctggaatctg 48041495  T
Q  195 ataaggttgacttattagttttttaagatccagaagctttcaagtttatatgcttttcatttcttaagatctggaagctgtcaagttttatctacatact 294  Q
    ||||||||||||| |||| |||||||||||| |||||| |||||||| |||||||||||||| ||||||||||||||||||||||||| |||||||||||    
T  48041496 ataaggttgacttgttagatttttaagatccggaagctgtcaagtttttatgcttttcattttttaagatctggaagctgtcaagtttgatctacatact 48041595  T
Q  295 agtgtatagtagtat 309  Q
    ||||| |||||||||    
T  48041596 agtgtctagtagtat 48041610  T

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Target: chr1; HSP #3
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 21 - 158
Target Start/End: Original strand, 48040159 - 48040297
Alignment:
Q  21 aacttttcatataagggcatttggtctagtggtatgattctcgctttgggtgcgagaggtcccgagttcgattctcggaatgcccc-ttttgaaggttag 119  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||    
T  48040159 aacttttcatatcagggcatttggtctagtggtatgattctcgctttgggtgcgagaggtcccgagttcgattctcggaatgcccctttttgaaggtcag 48040258  T
Q  120 gaggttaactttccaatatattagttaaataccaataag 158  Q
    ||  ||||||||  ||||| |||||||||||| ||||||    
T  48040259 gaatttaactttttaatattttagttaaatacaaataag 48040297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 11 - 137
Target Start/End: Complemental strand, 29812920 - 29812793
Alignment:
Q  11 cacagacaataacttttcatataagggcatttggtctagtggtatgattctcgctttgggtgcgagaggtcccgagttcgattctcggaatgcccc-ttt 109  Q
    |||| ||||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  29812920 cacaaacaataactttgcatgtcagggcatttggtctagtggtatgattctcgctttgggtgcgagaggtcccgagttcgattctcggaatgcccctttt 29812821  T
Q  110 tgaaggttaggaggttaactttccaata 137  Q
    ||||||||||||| |||||||| |||||    
T  29812820 tgaaggttaggagtttaacttttcaata 29812793  T

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Target: chr1; HSP #5
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 21 - 174
Target Start/End: Original strand, 48055929 - 48056083
Alignment:
Q  21 aacttttcatataagggcatttggtctagtggtatgattctcgctttgggtgcgagaggtcccgagttcgattctcggaatgcccc-ttttgaaggttag 119  Q
    |||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |||||||||||||    
T  48055929 aacttttcatagcagggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccctttttgaaggttag 48056028  T
Q  120 gaggttaactttccaatatattagttaaataccaataagctctgttttttgtttt 174  Q
    ||| || | ||| ||| || ||||||| |||| ||||||||| || |||| ||||    
T  48056029 gagttttatttttcaacattttagttatatacaaataagctcagtattttctttt 48056083  T

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Target: chr1; HSP #6
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 22 - 138
Target Start/End: Original strand, 48053114 - 48053231
Alignment:
Q  22 acttttcatataagggcatttggtctagtggtatgattctcgctttgggtgcgagaggtcccgagttcgattctcggaatgcccc-ttttgaaggttagg 120  Q
    ||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||     
T  48053114 acttttcatatcagggcatttggtctagtggtataattctcgctttgggtgcgagaggtcccgagttcaattctcggaatgcccctttttgaaggttaga 48053213  T
Q  121 aggttaactttccaatat 138  Q
    || |||||||| ||||||    
T  48053214 agtttaacttttcaatat 48053231  T

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Target: chr1; HSP #7
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 19 - 158
Target Start/End: Original strand, 48042819 - 48042959
Alignment:
Q  19 ataacttttcatataagggcatttggtctagtggtatgattctcgctttgggtgcgagaggtcccgagttcgattctcggaatgcccc-ttttgaaggtt 117  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| ||||||||| |||||||||||    
T  48042819 ataacttttcatatcagggcatttggtctagtggtatgattctcgctttgggtgcgagaggcccggagttcgattctctgaatgcccctttttgaaggtt 48042918  T
Q  118 aggaggttaactttccaatatattagttaaataccaataag 158  Q
    ||| | || | ||| ||| || |||||||||||| ||||||    
T  48042919 aggggttttatttttcaacattttagttaaatacaaataag 48042959  T

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Target: chr1; HSP #8
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 21 - 211
Target Start/End: Complemental strand, 29813734 - 29813541
Alignment:
Q  21 aacttttcatataagggcatttggtctagtggtatgattctcgctttgggtgcgagaggtcccgagttcgattctcggaatgccccttttgaaggttagg 120  Q
    |||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||  | || |||||||||||||||||| |    
T  29813734 aacttttcatatcagggcatttggtctagtggtttgattctcgctttgggtgcgagaggtcctgagttcgatttgctgagtgccccttttgaaggttaag 29813635  T
Q  121 aggttaactttc-caatatattagttaaataccaataagctc--tgttttttgttt-tggttgaagatttggaatctgataaggttgacttatta 211  Q
    || ||||||||  |||||| |||||| ||||| |  ||||||  |||||||| ||| | ||||||||| ||||| |||| |||||||||||||||    
T  29813634 agtttaactttttcaatattttagtttaatac-aggaagctcggtgttttttatttattgttgaagatctggaagctgacaaggttgacttatta 29813541  T

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Target: chr1; HSP #9
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 21 - 211
Target Start/End: Original strand, 48050595 - 48050791
Alignment:
Q  21 aacttttcatataagggcatttggtctagtggtatgattctcgctttgggtgcgagaggtcccgagttcgattctcggaatgcccc---ttttgaaggtt 117  Q
    |||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||   || ||||||||    
T  48050595 aacttttcatagtagggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccccttttgtgaaggtt 48050694  T
Q  118 aggaggttaactttccaatatattagttaaataccaataagctctg---ttttttgttttggttgaagatttggaatctgataaggttgacttatta 211  Q
    ||||| || | ||| ||| || ||||||||| || ||||| ||| |   |||||| || | ||||||||| | ||| |||| |||| ||||||||||    
T  48050695 aggagttttatttttcaacattttagttaaagacaaataaactcagtattttttttttattgttgaagatcttgaagctgacaaggatgacttatta 48050791  T

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Target: chr1; HSP #10
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 19 - 110
Target Start/End: Original strand, 48035742 - 48035833
Alignment:
Q  19 ataacttttcatataagggcatttggtctagtggtatgattctcgctttgggtgcgagaggtcccgagttcgattctcggaatgcccctttt 110  Q
    |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||    
T  48035742 ataatttttcatatcagggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccctttt 48035833  T

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Target: chr1; HSP #11
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 45 - 169
Target Start/End: Original strand, 48054322 - 48054447
Alignment:
Q  45 tctagtggtatgattctcgctttgggtgcgagaggtcccgagttcgattctcggaatgcccctttt-gaaggttaggaggttaactttccaatatattag 143  Q
    |||||||  ||||||||||||||||||||||||||||| ||||||||||||| ||||||| ||||| |||||| ||||| |||||||| |||||| ||||    
T  48054322 tctagtgaaatgattctcgctttgggtgcgagaggtcctgagttcgattctcagaatgccgcttttcgaaggtcaggagtttaacttttcaatattttag 48054421  T
Q  144 ttaaataccaataagctctgtttttt 169  Q
    |||||||| |||||||| ||||||||    
T  48054422 ttaaatacaaataagctgtgtttttt 48054447  T

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Target: chr1; HSP #12
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 176 - 299
Target Start/End: Original strand, 48054794 - 48054917
Alignment:
Q  176 gttgaagatttggaatctgataaggttgacttattagttttttaagatccagaagctttcaagtttatatgctttt-catttcttaagatctggaagctg 274  Q
    ||||||||| |||||||||| |||||||||||||| |||||| |||||||||||||| |||||||| ||||||||| | ||| |||||||||||||||||    
T  48054794 gttgaagatctggaatctgacaaggttgacttatttgttttt-aagatccagaagctgtcaagtttttatgctttttcgttttttaagatctggaagctg 48054892  T
Q  275 tcaagttttatctacatactagtgt 299  Q
    |||||||| ||||| ||||||||||    
T  48054893 tcaagtttgatctatatactagtgt 48054917  T

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Target: chr1; HSP #13
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 34 - 110
Target Start/End: Original strand, 5126503 - 5126579
Alignment:
Q  34 agggcatttggtctagtggtatgattctcgctttgggtgcgagaggtcccgagttcgattctcggaatgcccctttt 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||    
T  5126503 agggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccctttt 5126579  T

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Target: chr1; HSP #14
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 34 - 110
Target Start/End: Original strand, 48033102 - 48033178
Alignment:
Q  34 agggcatttggtctagtggtatgattctcgctttgggtgcgagaggtcccgagttcgattctcggaatgcccctttt 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||    
T  48033102 agggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccctttt 48033178  T

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Target: chr1; HSP #15
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 22 - 106
Target Start/End: Original strand, 48034698 - 48034782
Alignment:
Q  22 acttttcatataagggcatttggtctagtggtatgattctcgctttgggtgcgagaggtcccgagttcgattctcggaatgcccc 106  Q
    ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||    
T  48034698 acttttcatagcagggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccc 48034782  T

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Target: chr1; HSP #16
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 35 - 110
Target Start/End: Complemental strand, 39972857 - 39972782
Alignment:
Q  35 gggcatttggtctagtggtatgattctcgctttgggtgcgagaggtcccgagttcgattctcggaatgcccctttt 110  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||    
T  39972857 gggcatttggtctagtggtatgattctcgcttagggtgcgagaggtcccgagttcaattctcggaatgcccctttt 39972782  T

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Target: chr1; HSP #17
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 21 - 161
Target Start/End: Original strand, 48048628 - 48048769
Alignment:
Q  21 aacttttcatataagggcatttggtc-tagtggtatgattctcgctttgggtgcgagaggtcccgagttcgattctcggaatg-ccccttttgaaggtta 118  Q
    |||||||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||||| |||| ||||||||||||| |||||||||||||       
T  48048628 aacttttcatatcagggcatttggtcctagtggtatcattctcgctttgggtgcgagaggtcccaagtttgattctcggaatgcccccttttgaagg-cc 48048726  T
Q  119 ggaggttaactttccaatatattagttaaataccaataagctc 161  Q
     ||| ||||||||  ||||| |||||||||||| |||| ||||    
T  48048727 tgagtttaactttttaatattttagttaaatacaaataggctc 48048769  T

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Target: chr1; HSP #18
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 33 - 110
Target Start/End: Original strand, 22908322 - 22908399
Alignment:
Q  33 aagggcatttggtctagtggtatgattctcgctttgggtgcgagaggtcccgagttcgattctcggaatgcccctttt 110  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| ||||||||||||||||||||    
T  22908322 aagggcatttggtctagtggtatgattctcgcttagggtgcgagaggtctcgagttcaattctcggaatgcccctttt 22908399  T

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Target: chr1; HSP #19
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 35 - 106
Target Start/End: Original strand, 48042225 - 48042296
Alignment:
Q  35 gggcatttggtctagtggtatgattctcgctttgggtgcgagaggtcccgagttcgattctcggaatgcccc 106  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||    
T  48042225 gggcatttggtctagtggtatgattctcgcttcgggtgcgagaggttccgagttcgattctcggaatgcccc 48042296  T

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Target: chr1; HSP #20
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 34 - 107
Target Start/End: Original strand, 48054678 - 48054751
Alignment:
Q  34 agggcatttggtctagtggtatgattctcgctttgggtgcgagaggtcccgagttcgattctcggaatgcccct 107  Q
    |||||||||||||||| |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||    
T  48054678 agggcatttggtctagaggtatgattctcgctttgggtgcgagaggttccgagttcaattctcggaatgcccct 48054751  T

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Target: chr1; HSP #21
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 38 - 106
Target Start/End: Original strand, 48050016 - 48050084
Alignment:
Q  38 catttggtctagtggtatgattctcgctttgggtgcgagaggtcccgagttcgattctcggaatgcccc 106  Q
    ||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||    
T  48050016 catttggtctagtggtatgattctcgctttgggtgtgagaggttccgagttcgattctcggaatgcccc 48050084  T

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Target: chr1; HSP #22
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 39 - 110
Target Start/End: Original strand, 48036725 - 48036796
Alignment:
Q  39 atttggtctagtggtatgattctcgctttgggtgcgagaggtcccgagttcgattctcggaatgcccctttt 110  Q
    ||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||| |||||||||||||    
T  48036725 atttggtctagtggtatgattctcgctttgggtgccagaggtccggagtttgattctccgaatgcccctttt 48036796  T

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Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 109 - 161
Target Start/End: Original strand, 48056271 - 48056323
Alignment:
Q  109 ttgaaggttaggaggttaactttccaatatattagttaaataccaataagctc 161  Q
    ||||||| ||||||||||| ||| |||||| |||||||||||| |||||||||    
T  48056271 ttgaaggctaggaggttaatttttcaatattttagttaaatacaaataagctc 48056323  T

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Target: chr3 (Bit Score: 72; Significance: 1e-32; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 32 - 111
Target Start/End: Original strand, 31125750 - 31125829
Alignment:
Q  32 taagggcatttggtctagtggtatgattctcgctttgggtgcgagaggtcccgagttcgattctcggaatgccccttttg 111  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||    
T  31125750 taagggcatttggtctagtggtatgattctcgcttagggtgcgagaggtcccgagttcaattctcggaatgccccttttg 31125829  T

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Target: chr3; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 35 - 111
Target Start/End: Original strand, 53107639 - 53107715
Alignment:
Q  35 gggcatttggtctagtggtatgattctcgctttgggtgcgagaggtcccgagttcgattctcggaatgccccttttg 111  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||    
T  53107639 gggcatttggtctagtggtatgattctcgcttagggtgcgagaggtcccgagttcaattctcggaatgccccttttg 53107715  T

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Target: chr3; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 35 - 110
Target Start/End: Original strand, 34974803 - 34974878
Alignment:
Q  35 gggcatttggtctagtggtatgattctcgctttgggtgcgagaggtcccgagttcgattctcggaatgcccctttt 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||    
T  34974803 gggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccctttt 34974878  T

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Target: chr3; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 34 - 106
Target Start/End: Complemental strand, 47565749 - 47565677
Alignment:
Q  34 agggcatttggtctagtggtatgattctcgctttgggtgcgagaggtcccgagttcgattctcggaatgcccc 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||    
T  47565749 agggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccc 47565677  T

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Target: chr3; HSP #5
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 35 - 106
Target Start/End: Complemental strand, 38930542 - 38930471
Alignment:
Q  35 gggcatttggtctagtggtatgattctcgctttgggtgcgagaggtcccgagttcgattctcggaatgcccc 106  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||    
T  38930542 gggcatttggtctagtggtatgattctcgcttagggtgcgagaggtcccgagttcaattctcggaatgcccc 38930471  T

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Target: chr3; HSP #6
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 35 - 106
Target Start/End: Original strand, 53682982 - 53683053
Alignment:
Q  35 gggcatttggtctagtggtatgattctcgctttgggtgcgagaggtcccgagttcgattctcggaatgcccc 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||    
T  53682982 gggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccc 53683053  T

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Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 44 - 95
Target Start/End: Original strand, 32170503 - 32170554
Alignment:
Q  44 gtctagtggtatgattctcgctttgggtgcgagaggtcccgagttcgattct 95  Q
    |||||||||||||||||| |||| |||||||||||||| | |||| ||||||    
T  32170503 gtctagtggtatgattctagcttggggtgcgagaggtcgcaagtttgattct 32170554  T

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Target: chr2 (Bit Score: 70; Significance: 2e-31; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 33 - 110
Target Start/End: Original strand, 6796495 - 6796572
Alignment:
Q  33 aagggcatttggtctagtggtatgattctcgctttgggtgcgagaggtcccgagttcgattctcggaatgcccctttt 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||    
T  6796495 aagggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccctttt 6796572  T

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Target: chr2; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 34 - 110
Target Start/End: Complemental strand, 35926197 - 35926121
Alignment:
Q  34 agggcatttggtctagtggtatgattctcgctttgggtgcgagaggtcccgagttcgattctcggaatgcccctttt 110  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||    
T  35926197 agggcatttggtctagtggtatgattctcgcttagggtgcgagaggtcccgagttcaattctcggaatgcccctttt 35926121  T

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Target: chr2; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 35 - 111
Target Start/End: Original strand, 39990580 - 39990656
Alignment:
Q  35 gggcatttggtctagtggtatgattctcgctttgggtgcgagaggtcccgagttcgattctcggaatgccccttttg 111  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||    
T  39990580 gggcatttggtctagtggtatgattctcgcttagggtgcgagaggtcccgagttcaattctcggaatgccccttttg 39990656  T

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Target: chr2; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 35 - 110
Target Start/End: Complemental strand, 6801125 - 6801050
Alignment:
Q  35 gggcatttggtctagtggtatgattctcgctttgggtgcgagaggtcccgagttcgattctcggaatgcccctttt 110  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||    
T  6801125 gggcatttggtctagtggtatgattctcgcttagggtgcgagaggtcccgagttcaattctcggaatgcccctttt 6801050  T

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Target: chr2; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 33 - 106
Target Start/End: Original strand, 7181562 - 7181635
Alignment:
Q  33 aagggcatttggtctagtggtatgattctcgctttgggtgcgagaggtcccgagttcgattctcggaatgcccc 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||    
T  7181562 aagggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccc 7181635  T

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Target: chr2; HSP #6
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 35 - 106
Target Start/End: Complemental strand, 13327067 - 13326996
Alignment:
Q  35 gggcatttggtctagtggtatgattctcgctttgggtgcgagaggtcccgagttcgattctcggaatgcccc 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||    
T  13327067 gggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccc 13326996  T

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Target: chr2; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 33 - 107
Target Start/End: Complemental strand, 35920207 - 35920133
Alignment:
Q  33 aagggcatttggtctagtggtatgattctcgctttgggtgcgagaggtcccgagttcgattctcggaatgcccct 107  Q
    |||||||| |||||||||||||||||||| |||| |||||||||||||||| ||||| |||||||||||||||||    
T  35920207 aagggcatctggtctagtggtatgattcttgcttagggtgcgagaggtcccaagttcaattctcggaatgcccct 35920133  T

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Target: chr7 (Bit Score: 68; Significance: 2e-30; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 35 - 110
Target Start/End: Original strand, 43920607 - 43920682
Alignment:
Q  35 gggcatttggtctagtggtatgattctcgctttgggtgcgagaggtcccgagttcgattctcggaatgcccctttt 110  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||    
T  43920607 gggcatttggtctagtggtatgattctcgcttagggtgcgagaggtcccgagttcaattctcggaatgcccctttt 43920682  T

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Target: chr7; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 35 - 106
Target Start/End: Original strand, 23780469 - 23780540
Alignment:
Q  35 gggcatttggtctagtggtatgattctcgctttgggtgcgagaggtcccgagttcgattctcggaatgcccc 106  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||    
T  23780469 gggcatttggtctagtggtatgattctcgcttagggtgcgagaggtcccgagttcaattctcggaatgcccc 23780540  T

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Target: chr7; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 35 - 106
Target Start/End: Original strand, 40706106 - 40706177
Alignment:
Q  35 gggcatttggtctagtggtatgattctcgctttgggtgcgagaggtcccgagttcgattctcggaatgcccc 106  Q
    |||||||||||||||| |||||||||||||||  ||||||||||||||||||||| ||||||||||||||||    
T  40706106 gggcatttggtctagttgtatgattctcgcttaaggtgcgagaggtcccgagttcaattctcggaatgcccc 40706177  T

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Target: chr7; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 40 - 97
Target Start/End: Complemental strand, 46064854 - 46064797
Alignment:
Q  40 tttggtctagtggtatgattctcgctttgggtgcgagaggtcccgagttcgattctcg 97  Q
    ||||||||||||||||||||||||||| ||||||||||||||  ||||||||||||||    
T  46064854 tttggtctagtggtatgattctcgcttcgggtgcgagaggtcgtgagttcgattctcg 46064797  T

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Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 35 - 110
Target Start/End: Complemental strand, 38393634 - 38393559
Alignment:
Q  35 gggcatttggtctagtggtatgattctcgctttgggtgcgagaggtcccgagttcgattctcggaatgcccctttt 110  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||    
T  38393634 gggcatttggtctagtggtatgattctcgcttagggtgcgagaggtcccgagttcaattctcggaatgcccctttt 38393559  T

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Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 34 - 106
Target Start/End: Complemental strand, 49152607 - 49152535
Alignment:
Q  34 agggcatttggtctagtggtatgattctcgctttgggtgcgagaggtcccgagttcgattctcggaatgcccc 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||    
T  49152607 agggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccc 49152535  T

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Target: chr4; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 40 - 97
Target Start/End: Complemental strand, 26929355 - 26929298
Alignment:
Q  40 tttggtctagtggtatgattctcgctttgggtgcgagaggtcccgagttcgattctcg 97  Q
    ||||||||||||||||||||||||||| ||||||||||||||  ||||||||||||||    
T  26929355 tttggtctagtggtatgattctcgcttcgggtgcgagaggtcgtgagttcgattctcg 26929298  T

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Target: chr6 (Bit Score: 67; Significance: 9e-30; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 33 - 107
Target Start/End: Complemental strand, 10754670 - 10754596
Alignment:
Q  33 aagggcatttggtctagtggtatgattctcgctttgggtgcgagaggtcccgagttcgattctcggaatgcccct 107  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||    
T  10754670 aagggcatttggtctagtggtatgattctcgcttagggtgcgagaggtcccgagttcaattctcggaatgcccct 10754596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 35 - 107
Target Start/End: Complemental strand, 992513 - 992441
Alignment:
Q  35 gggcatttggtctagtggtatgattctcgctttgggtgcgagaggtcccgagttcgattctcggaatgcccct 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||    
T  992513 gggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccct 992441  T

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Target: chr6; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 25 - 162
Target Start/End: Complemental strand, 32678699 - 32678569
Alignment:
Q  25 tttcatataagggcatttggtctagtggtatgattctcgctttgggtgcgagaggtcccgagttcgattctcggaatgccc--cttttgaaggttaggag 122  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||         |||||||   |||||| | |||||||    
T  32678699 tttcatataagggcatttggtctagtggtatgattctcgctttgggtgtgagaggtcctgagttc---------aatgcccattttttgatgattaggag 32678609  T
Q  123 gttaactttccaatatattagttaaataccaataagctct 162  Q
     |||||||| |||||| |||||||||||| ||||||||||    
T  32678608 tttaacttttcaatattttagttaaatacaaataagctct 32678569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 33 - 106
Target Start/End: Complemental strand, 10750353 - 10750280
Alignment:
Q  33 aagggcatttggtctagtggtatgattctcgctttgggtgcgagaggtcccgagttcgattctcggaatgcccc 106  Q
    ||||||||||| |||||||||||||||||||||| |||||| ||||||||||||||| ||||||||||||||||    
T  10750353 aagggcatttgatctagtggtatgattctcgcttagggtgcaagaggtcccgagttcaattctcggaatgcccc 10750280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 35 - 106
Target Start/End: Original strand, 18613088 - 18613159
Alignment:
Q  35 gggcatttggtctagtggtatgattctcgctttgggtgcgagaggtcccgagttcgattctcggaatgcccc 106  Q
    ||||||||| ||||||||||||||||| |||| |||||||||||||||||||||  ||||||||||||||||    
T  18613088 gggcatttgatctagtggtatgattcttgcttagggtgcgagaggtcccgagtttaattctcggaatgcccc 18613159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 33 - 106
Target Start/End: Complemental strand, 10748757 - 10748684
Alignment:
Q  33 aagggcatttggtctagtggtatgattctcgctttgggtgcgagaggtcccgagttcgattctcggaatgcccc 106  Q
    ||||||||||||||||||| ||||||||||| || ||||| |||||||| |||| || ||||||||||||||||    
T  10748757 aagggcatttggtctagtgatatgattctcgtttagggtgtgagaggtctcgagctcaattctcggaatgcccc 10748684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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