View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17241_high_32 (Length: 319)
Name: NF17241_high_32
Description: NF17241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17241_high_32 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 26 - 307
Target Start/End: Complemental strand, 34788782 - 34788501
Alignment:
| Q |
26 |
aaaatacttagaagttcacaaaaggctgcttacttgtacacatctcttgttcgctccatatctccagcatcaagttcttcataaagtgcataattaatcc |
125 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34788782 |
aaaatacttagaagttcacaaaaggctgcttacttgtacacatctcttgtttgctccatatctccagcatcaagttcttcataaagtgcataattaatcc |
34788683 |
T |
|
| Q |
126 |
taagatacacgcagaaaataataaataccactagaaaatgcaaaatcactaaatgataaataaacaaaccgacaacaaaacagcattcaaatcaaacgta |
225 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34788682 |
taagatacacgcagaaaataataaataccactagaaaatgaaaaatcactaaatgataaataaacaaaccgacaacaaaacagcattcaaatcaaacgta |
34788583 |
T |
|
| Q |
226 |
ccacaaataaatatagcgctgccagtatcgcttctcctcagctggaggaacattagctatagctctctcataaacctcccta |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
34788582 |
ccacaaataaatatagcgctgccagtatcgcttctcctcagctagaggtacattagctatagctctctcataaacctcccta |
34788501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 36 - 307
Target Start/End: Original strand, 2292421 - 2292693
Alignment:
| Q |
36 |
gaagttcacaaaaggctgcttacttgtacacatctcttgttcgctccatatctccagcatcaagttcttcataaagtgcataattaatcctaagatacac |
135 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||| || || |
|
|
| T |
2292421 |
gaagttcacaaaaggctgcttacttgtacacgtctcttgttcgctccatgtctccagcatcgagttcttcatagagtgcataattaatcctaagttatac |
2292520 |
T |
|
| Q |
136 |
gcaga-aaataataaataccactagaaaatgcaaaatcactaaatgataaataaacaaaccgacaacaaaacagcattcaaatcaaacgtaccacaaata |
234 |
Q |
| |
|
|||| |||||||||||||||| | |||||||||||||| ||||| |||||||||||||| || |||||||||| ||||||||||||| ||||||||||| |
|
|
| T |
2292521 |
acagacaaataataaataccacaaaaaaatgcaaaatcaataaataataaataaacaaacagataacaaaacagaattcaaatcaaacataccacaaata |
2292620 |
T |
|
| Q |
235 |
aatatagcgctgccagtatcgcttctcctcagctggaggaacattagctatagctctctcataaacctcccta |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
2292621 |
aatatagcgctgccagtatcgcttctcctcagcaggaggaacattggctatagctctctcataaacctcccta |
2292693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 151; Significance: 7e-80; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 39 - 304
Target Start/End: Original strand, 2597576 - 2597842
Alignment:
| Q |
39 |
gttcacaaaaggctgcttacttgtacacatctcttgttcgctccatatctccagcatcaagttcttcataaagtgcataattaatcctaagatacacgca |
138 |
Q |
| |
|
||||| |||||||||||||| ||||||| |||||||||||||| ||||||||| ||| |||||||||||||||||||||| |||||| ||| ||||| |
|
|
| T |
2597576 |
gttcagaaaaggctgcttacctgtacacgtctcttgttcgctcaatatctccaacattaagttcttcataaagtgcataactaatccaaagttacacatg |
2597675 |
T |
|
| Q |
139 |
ga-aaataataaataccactagaaaatgcaaaatcactaaatgataaataaacaaaccgacaacaaaacagcattcaaatcaaacgtaccacaaataaat |
237 |
Q |
| |
|
|| |||||||||||||||| |||||||||||||||||||||| |||||||||||||| | | ||||||| ||||||||||||| ||||||| |||||| |
|
|
| T |
2597676 |
gacaaataataaataccacaagaaaatgcaaaatcactaaataataaataaacaaacagctaccaaaacaaaattcaaatcaaacataccacagataaat |
2597775 |
T |
|
| Q |
238 |
atagcgctgccagtatcgcttctcctcagctggaggaacattagctatagctctctcataaacctcc |
304 |
Q |
| |
|
|||| ||||||||||||| ||||| || ||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
2597776 |
atagtgctgccagtatcgattctcatcggctagaggaacattagctatagctctctcataaacctcc |
2597842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 60 - 123
Target Start/End: Original strand, 49279879 - 49279942
Alignment:
| Q |
60 |
tgtacacatctcttgttcgctccatatctccagcatcaagttcttcataaagtgcataattaat |
123 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||| |||||||| |||||||| ||||| |
|
|
| T |
49279879 |
tgtacacatctcttgctcgctccatatctccagcatcaagctcttcatagagtgcatacttaat |
49279942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 60 - 124
Target Start/End: Original strand, 49276322 - 49276386
Alignment:
| Q |
60 |
tgtacacatctcttgttcgctccatatctccagcatcaagttcttcataaagtgcataattaatc |
124 |
Q |
| |
|
||||||||||||||| ||||||||||| || || ||||| ||||||||| |||||||||||||| |
|
|
| T |
49276322 |
tgtacacatctcttgctcgctccatatttctagtatcaaactcttcataacgtgcataattaatc |
49276386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 268 - 307
Target Start/End: Original strand, 49276428 - 49276467
Alignment:
| Q |
268 |
tggaggaacattagctatagctctctcataaacctcccta |
307 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
49276428 |
tggaggaacattagatatagctctctcataaacctcccta |
49276467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 268 - 307
Target Start/End: Original strand, 49279985 - 49280024
Alignment:
| Q |
268 |
tggaggaacattagctatagctctctcataaacctcccta |
307 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
49279985 |
tggaggaacattagatatagctctctcataaacctcccta |
49280024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 263 - 304
Target Start/End: Complemental strand, 24602253 - 24602212
Alignment:
| Q |
263 |
tcagctggaggaacattagctatagctctctcataaacctcc |
304 |
Q |
| |
|
||||| |||||||||||||||| ||||||||||||||||||| |
|
|
| T |
24602253 |
tcagccggaggaacattagctacagctctctcataaacctcc |
24602212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University