View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17241_high_33 (Length: 316)
Name: NF17241_high_33
Description: NF17241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17241_high_33 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 10 - 316
Target Start/End: Original strand, 7554091 - 7554397
Alignment:
| Q |
10 |
tccaaaaatataaaagaaacactacagagaatacaaagttataacattcttatcataactgacattaaaaaagtaaattctaacagaagtaaatctgtnn |
109 |
Q |
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||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7554091 |
tccaacaacataaaagaaacactacagagaatacaaagttataacattcttatcataactgacattaaaaaagtaaattctaacagaagtaaatctgtaa |
7554190 |
T |
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| Q |
110 |
nnnnngaaacatttgacattttagagtttgaacttcggcagagcatttcagaatactagtgaacaacacatccatggcgcgagtagagttccttcttttc |
209 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7554191 |
aaaaagaaaaatttgacattttagagtttgaacttcggcagagcatttcagaatactagtgaacaacacatccatggcgcgagtagagttccttcttttc |
7554290 |
T |
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| Q |
210 |
gtaactccaatcccatgcaggcggagcttctatccttctcaatgatgtccttgaaactaccatctcgtcaacaatattgccaatcactttaccacaattc |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
7554291 |
gtaactccaatcccatgcaggcggagcttctatccttctcaatgatggccttgaaactaccatctcgtcaacaatattgccattcactttaccacaattc |
7554390 |
T |
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| Q |
310 |
tgcaaat |
316 |
Q |
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||||||| |
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| T |
7554391 |
tgcaaat |
7554397 |
T |
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