View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17241_high_38 (Length: 298)
Name: NF17241_high_38
Description: NF17241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17241_high_38 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 12 - 281
Target Start/End: Original strand, 35635324 - 35635590
Alignment:
| Q |
12 |
atgaataataacgagttataaagtttaaaacgggtaaaattaccagattctccaacgatattcctagtagatttaacaatcgcaaggagctcggtgcatg |
111 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35635324 |
atgaataatgacgagttataaagtttaaaacgggtaaaattaccggatgctccaacgatattgctagtagatttaacaatcgcaaggagctcggtgcatg |
35635423 |
T |
|
| Q |
112 |
cacagatggatcactccactgaagaaacaatcgcaaagtcttcacaatgctaatcttatttcataagtttcatttatatgcacatataagnnnnnnnnna |
211 |
Q |
| |
|
|||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
35635424 |
cacagatggatc---ccactgaagaaacaatggcaaagtcttcacaatgctaatcttatttcataagtttcatttatatgcacatataagtttttttaaa |
35635520 |
T |
|
| Q |
212 |
aatttacacgtcaaatctgcgatctcatcattatatggtacaatattgttttttacatacttaatacata |
281 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
35635521 |
attttacacgtcaaatctgcgatctcatcattatatgctacaatattgttttttacatacttaatacata |
35635590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University