View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17241_high_45 (Length: 260)

Name: NF17241_high_45
Description: NF17241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17241_high_45
NF17241_high_45
[»] chr6 (15 HSPs)
chr6 (16-171)||(10935736-10935891)
chr6 (47-107)||(16734826-16734886)
chr6 (45-108)||(23264514-23264577)
chr6 (59-109)||(11655052-11655102)
chr6 (57-107)||(29667934-29667984)
chr6 (47-107)||(15361736-15361796)
chr6 (38-103)||(9631178-9631243)
chr6 (47-107)||(11936786-11936846)
chr6 (47-107)||(11948766-11948826)
chr6 (204-243)||(10935674-10935713)
chr6 (45-95)||(30481259-30481309)
chr6 (49-95)||(34374848-34374894)
chr6 (46-107)||(23904371-23904432)
chr6 (47-107)||(4485584-4485644)
chr6 (47-107)||(12591854-12591914)
[»] chr1 (11 HSPs)
chr1 (47-108)||(3399643-3399704)
chr1 (37-107)||(12189963-12190033)
chr1 (47-107)||(5911683-5911743)
chr1 (47-107)||(28636924-28636984)
chr1 (45-106)||(897474-897535)
chr1 (47-108)||(15204615-15204676)
chr1 (47-107)||(15214348-15214408)
chr1 (47-107)||(16222799-16222859)
chr1 (57-107)||(1843983-1844033)
chr1 (38-103)||(39368663-39368728)
chr1 (57-109)||(13208643-13208695)
[»] chr3 (15 HSPs)
chr3 (45-107)||(26707878-26707940)
chr3 (37-109)||(5498489-5498561)
chr3 (47-107)||(16457350-16457410)
chr3 (47-107)||(2550187-2550247)
chr3 (47-107)||(13846013-13846073)
chr3 (49-104)||(2943236-2943291)
chr3 (38-97)||(27259474-27259533)
chr3 (38-107)||(9633461-9633530)
chr3 (47-107)||(1627966-1628026)
chr3 (47-107)||(1654597-1654657)
chr3 (47-107)||(7407773-7407833)
chr3 (38-107)||(1613232-1613301)
chr3 (46-107)||(36035309-36035370)
chr3 (80-108)||(26735688-26735716)
chr3 (45-109)||(35082995-35083059)
[»] chr5 (15 HSPs)
chr5 (47-107)||(17037564-17037624)
chr5 (46-105)||(10869457-10869516)
chr5 (50-107)||(9333580-9333637)
chr5 (39-88)||(16411603-16411652)
chr5 (47-107)||(5079083-5079143)
chr5 (47-107)||(12042196-12042256)
chr5 (47-107)||(19985016-19985076)
chr5 (47-107)||(31068982-31069041)
chr5 (47-107)||(7410845-7410905)
chr5 (51-107)||(9354408-9354464)
chr5 (47-107)||(40402028-40402088)
chr5 (56-107)||(42076077-42076128)
chr5 (47-88)||(11833279-11833320)
chr5 (51-107)||(30786292-30786348)
chr5 (57-105)||(37233063-37233111)
[»] chr8 (12 HSPs)
chr8 (38-109)||(5650962-5651033)
chr8 (38-107)||(6801849-6801918)
chr8 (47-115)||(25638828-25638896)
chr8 (47-107)||(6403614-6403674)
chr8 (47-107)||(28249094-28249154)
chr8 (47-107)||(29345452-29345512)
chr8 (47-107)||(45356131-45356191)
chr8 (47-107)||(17634490-17634550)
chr8 (38-115)||(14997633-14997710)
chr8 (50-107)||(29553653-29553710)
chr8 (50-107)||(31347373-31347430)
chr8 (45-109)||(5000698-5000762)
[»] chr7 (12 HSPs)
chr7 (45-103)||(30089754-30089812)
chr7 (50-139)||(26608525-26608615)
chr7 (38-107)||(26205434-26205503)
chr7 (38-107)||(29932368-29932436)
chr7 (47-107)||(4685422-4685482)
chr7 (49-115)||(16086510-16086576)
chr7 (45-99)||(26619130-26619184)
chr7 (57-107)||(27135960-27136010)
chr7 (38-99)||(3374313-3374374)
chr7 (47-107)||(9242503-9242563)
chr7 (47-107)||(10022145-10022205)
chr7 (47-107)||(20277379-20277439)
[»] chr4 (8 HSPs)
chr4 (45-107)||(4904159-4904221)
chr4 (37-106)||(24559015-24559084)
chr4 (51-107)||(18941677-18941733)
chr4 (52-98)||(45641677-45641723)
chr4 (45-104)||(48464059-48464118)
chr4 (47-107)||(43600288-43600348)
chr4 (47-107)||(47066053-47066113)
chr4 (45-107)||(4881088-4881150)
[»] chr2 (10 HSPs)
chr2 (37-107)||(41573404-41573474)
chr2 (38-107)||(24479164-24479233)
chr2 (45-107)||(11017476-11017538)
chr2 (38-107)||(15540318-15540387)
chr2 (38-107)||(40016603-40016672)
chr2 (47-107)||(30267024-30267084)
chr2 (47-107)||(31342735-31342795)
chr2 (49-107)||(15513690-15513748)
chr2 (38-107)||(7702441-7702510)
chr2 (47-107)||(7718206-7718266)
[»] scaffold0576 (1 HSPs)
scaffold0576 (47-107)||(6720-6780)


Alignment Details
Target: chr6 (Bit Score: 152; Significance: 1e-80; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 16 - 171
Target Start/End: Complemental strand, 10935891 - 10935736
Alignment:
Q  16 attgagatctaataacgtttgaaaaaatattactaaatcatgaaaaatgttactaattatatccagtaacatttgaacaattgttaggtaaaactcatgt 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10935891 attgagatctaataacgtttgaaaaaatattactaaatcatgaaaaatgttactaattatatccagtaacatttgaacaattgttaggtaaaactcatgt 10935792  T
Q  116 aataaggagttttagtagcatttttaaaatgcttattatttttcccgccctattgc 171  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  10935791 aataaggagttttagtagcatttttaaaatgtttattatttttcccgccctattgc 10935736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 47 - 107
Target Start/End: Original strand, 16734826 - 16734886
Alignment:
Q  47 actaaatcatgaaaaatgttactaattatatccagtaacatttgaacaattgttaggtaaa 107  Q
    ||||||||| |||||||||||||||||| ||  || |||||||||||||||||||||||||    
T  16734826 actaaatcaagaaaaatgttactaattaaatttagcaacatttgaacaattgttaggtaaa 16734886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 45 - 108
Target Start/End: Complemental strand, 23264577 - 23264514
Alignment:
Q  45 ttactaaatcatgaaaaatgttactaattatatccagtaacatttgaacaattgttaggtaaaa 108  Q
    ||||||||||| ||||| |||||||||||| ||  ||||||||| |||||||||||||||||||    
T  23264577 ttactaaatcaagaaaattgttactaattaaatttagtaacattcgaacaattgttaggtaaaa 23264514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 59 - 109
Target Start/End: Complemental strand, 11655102 - 11655052
Alignment:
Q  59 aaaatgttactaattatatccagtaacatttgaacaattgttaggtaaaac 109  Q
    |||||||||||||||||||| |||||||||| ||||||| |||||||||||    
T  11655102 aaaatgttactaattatatcgagtaacatttaaacaattattaggtaaaac 11655052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 57 - 107
Target Start/End: Complemental strand, 29667984 - 29667934
Alignment:
Q  57 gaaaaatgttactaattatatccagtaacatttgaacaattgttaggtaaa 107  Q
    |||||||||||||||||| ||  ||||||||||||||||||||||||||||    
T  29667984 gaaaaatgttactaattaaatttagtaacatttgaacaattgttaggtaaa 29667934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 47 - 107
Target Start/End: Original strand, 15361736 - 15361796
Alignment:
Q  47 actaaatcatgaaaaatgttactaattatatccagtaacatttgaacaattgttaggtaaa 107  Q
    ||||||||| |||||||||||||||||| ||  || |||| ||||||||||||||||||||    
T  15361736 actaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttaggtaaa 15361796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 38 - 103
Target Start/End: Complemental strand, 9631243 - 9631178
Alignment:
Q  38 aaaaatattactaaatcatgaaaaatgttactaattatatccagtaacatttgaacaattgttagg 103  Q
    |||| ||||||||||||| ||| || |||||||| || ||  ||||||||||||||||||||||||    
T  9631243 aaaactattactaaatcaagaagaacgttactaagtaaatttagtaacatttgaacaattgttagg 9631178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 107
Target Start/End: Complemental strand, 11936846 - 11936786
Alignment:
Q  47 actaaatcatgaaaaatgttactaattatatccagtaacatttgaacaattgttaggtaaa 107  Q
    ||||||||| |||||||||||||||||| ||  || |||| ||||||||||||||| ||||    
T  11936846 actaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttagataaa 11936786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 107
Target Start/End: Complemental strand, 11948826 - 11948766
Alignment:
Q  47 actaaatcatgaaaaatgttactaattatatccagtaacatttgaacaattgttaggtaaa 107  Q
    ||||||||| |||||||||||||||||| ||  || |||| ||||||||||||||| ||||    
T  11948826 actaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttagataaa 11948766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 204 - 243
Target Start/End: Complemental strand, 10935713 - 10935674
Alignment:
Q  204 ctttgaattctaaaatccgagacacttcgtatattgttgg 243  Q
    ||||| ||||||||||| ||||||||||||||||||||||    
T  10935713 ctttggattctaaaatctgagacacttcgtatattgttgg 10935674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 95
Target Start/End: Complemental strand, 30481309 - 30481259
Alignment:
Q  45 ttactaaatcatgaaaaatgttactaattatatccagtaacatttgaacaa 95  Q
    ||||||||||| |||||||||| ||||||| ||| ||||||| ||||||||    
T  30481309 ttactaaatcaagaaaaatgttgctaattaaatctagtaacaattgaacaa 30481259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 95
Target Start/End: Original strand, 34374848 - 34374894
Alignment:
Q  49 taaatcatgaaaaatgttactaattatatccagtaacatttgaacaa 95  Q
    ||||||| |||||||||||||||||||||   |||||||||||||||    
T  34374848 taaatcaagaaaaatgttactaattatattttgtaacatttgaacaa 34374894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 46 - 107
Target Start/End: Complemental strand, 23904432 - 23904371
Alignment:
Q  46 tactaaatcatgaaaaatgttactaattatatccagtaacatttgaacaattgttaggtaaa 107  Q
    |||||||| | |||||| |||||||| |  ||  ||||||||||||||||||||||||||||    
T  23904432 tactaaatgaagaaaaaagttactaaatcaatttagtaacatttgaacaattgttaggtaaa 23904371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 107
Target Start/End: Complemental strand, 4485644 - 4485584
Alignment:
Q  47 actaaatcatgaaaaatgttactaattatatccagtaacatttgaacaattgttaggtaaa 107  Q
    ||||||||| | |||||| ||||||||| ||  ||||| ||||||| ||||||||||||||    
T  4485644 actaaatcaaggaaaatggtactaattaaatttagtaatatttgaataattgttaggtaaa 4485584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 107
Target Start/End: Original strand, 12591854 - 12591914
Alignment:
Q  47 actaaatcatgaaaaatgttactaattatatccagtaacatttgaacaattgttaggtaaa 107  Q
    ||||||||| ||||||||||| |||||| ||  ||||||  | ||||||||||||||||||    
T  12591854 actaaatcaagaaaaatgttagtaattaaatttagtaacgctcgaacaattgttaggtaaa 12591914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 47 - 108
Target Start/End: Original strand, 3399643 - 3399704
Alignment:
Q  47 actaaatcatgaaaaatgttactaattatatccagtaacatttgaacaattgttaggtaaaa 108  Q
    |||||||||||||||||||||||||||| ||  |||||||||||||||||||||||||||||    
T  3399643 actaaatcatgaaaaatgttactaattaaatttagtaacatttgaacaattgttaggtaaaa 3399704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 37 - 107
Target Start/End: Original strand, 12189963 - 12190033
Alignment:
Q  37 aaaaaatattactaaatcatgaaaaatgttactaattatatccagtaacatttgaacaattgttaggtaaa 107  Q
    ||||||| | ||||||||| ||||||| |||||||||| ||  ||||||||||||||||||||||||||||    
T  12189963 aaaaaatgtaactaaatcaagaaaaatattactaattaaatttagtaacatttgaacaattgttaggtaaa 12190033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 47 - 107
Target Start/End: Complemental strand, 5911743 - 5911683
Alignment:
Q  47 actaaatcatgaaaaatgttactaattatatccagtaacatttgaacaattgttaggtaaa 107  Q
    ||||||||| ||||||||||||| |||| ||  ||||||| ||||||||||||||||||||    
T  5911743 actaaatcaagaaaaatgttactgattaaatttagtaacacttgaacaattgttaggtaaa 5911683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 47 - 107
Target Start/End: Original strand, 28636924 - 28636984
Alignment:
Q  47 actaaatcatgaaaaatgttactaattatatccagtaacatttgaacaattgttaggtaaa 107  Q
    ||||||||| |||||||||||||||||  ||  ||||||||||||| ||||||||||||||    
T  28636924 actaaatcaagaaaaatgttactaattcaatttagtaacatttgaataattgttaggtaaa 28636984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 45 - 106
Target Start/End: Original strand, 897474 - 897535
Alignment:
Q  45 ttactaaatcatgaaaaatgttactaattatatccagtaacatttgaacaattgttaggtaa 106  Q
    ||||||||| | |||||||||| ||||||| ||  ||||||| |||||||||||||||||||    
T  897474 ttactaaatgaagaaaaatgttcctaattaaatttagtaacaattgaacaattgttaggtaa 897535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 47 - 108
Target Start/End: Original strand, 15204615 - 15204676
Alignment:
Q  47 actaaatcatgaaaaatgttactaattatatccagtaacatttgaacaattgttaggtaaaa 108  Q
    ||||||||| |||||||||| |||| || ||  ||||||| |||||||||||||||||||||    
T  15204615 actaaatcaagaaaaatgttgctaactaaatttagtaacacttgaacaattgttaggtaaaa 15204676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 107
Target Start/End: Original strand, 15214348 - 15214408
Alignment:
Q  47 actaaatcatgaaaaatgttactaattatatccagtaacatttgaacaattgttaggtaaa 107  Q
    ||||||||| ||||||| |||||||||| ||  ||||| ||||||||||||||| ||||||    
T  15214348 actaaatcaagaaaaattttactaattaaatttagtaatatttgaacaattgttgggtaaa 15214408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 107
Target Start/End: Original strand, 16222799 - 16222859
Alignment:
Q  47 actaaatcatgaaaaatgttactaattatatccagtaacatttgaacaattgttaggtaaa 107  Q
    ||||||||| |||||||||||||||| | ||  ||||||| ||||| ||||||||||||||    
T  16222799 actaaatcaagaaaaatgttactaataaaatttagtaacacttgaataattgttaggtaaa 16222859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 107
Target Start/End: Original strand, 1843983 - 1844033
Alignment:
Q  57 gaaaaatgttactaattatatccagtaacatttgaacaattgttaggtaaa 107  Q
    ||||||||||||| |||  ||  ||||||||||||||||||||||||||||    
T  1843983 gaaaaatgttactgattgaatttagtaacatttgaacaattgttaggtaaa 1844033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 38 - 103
Target Start/End: Complemental strand, 39368728 - 39368663
Alignment:
Q  38 aaaaatattactaaatcatgaaaaatgttactaattatatccagtaacatttgaacaattgttagg 103  Q
    |||||| ||||||||||| |||||||||||||||||| |   ||| ||||||  ||||||||||||    
T  39368728 aaaaatgttactaaatcaagaaaaatgttactaattaaaattagtcacatttatacaattgttagg 39368663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 109
Target Start/End: Original strand, 13208643 - 13208695
Alignment:
Q  57 gaaaaatgttactaattatatccagtaacatttgaacaattgttaggtaaaac 109  Q
    |||||||||||||||||| ||  |||| || |||||| |||||||||||||||    
T  13208643 gaaaaatgttactaattaaatttagtaccacttgaaccattgttaggtaaaac 13208695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 45 - 107
Target Start/End: Original strand, 26707878 - 26707940
Alignment:
Q  45 ttactaaatcatgaaaaatgttactaattatatccagtaacatttgaacaattgttaggtaaa 107  Q
    ||||||||||| |||||||||||||||||| ||  ||||||||||||||||||||||||||||    
T  26707878 ttactaaatcaagaaaaatgttactaattaaatttagtaacatttgaacaattgttaggtaaa 26707940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 37 - 109
Target Start/End: Original strand, 5498489 - 5498561
Alignment:
Q  37 aaaaaatattactaaatcatgaaaaatgttactaattatatccagtaacatttgaacaattgttaggtaaaac 109  Q
    ||||||| | ||||||||| |||||||||||||||||| ||  |||||| | |||||||||||||||||||||    
T  5498489 aaaaaatgtaactaaatcaagaaaaatgttactaattaaatttagtaacttctgaacaattgttaggtaaaac 5498561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 47 - 107
Target Start/End: Complemental strand, 16457410 - 16457350
Alignment:
Q  47 actaaatcatgaaaaatgttactaattatatccagtaacatttgaacaattgttaggtaaa 107  Q
    ||||||||| |||||||||||||||||| ||  |||||||||||| |||||||||||||||    
T  16457410 actaaatcaagaaaaatgttactaattaaatttagtaacatttgagcaattgttaggtaaa 16457350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 47 - 107
Target Start/End: Original strand, 2550187 - 2550247
Alignment:
Q  47 actaaatcatgaaaaatgttactaattatatccagtaacatttgaacaattgttaggtaaa 107  Q
    ||||||||| |||||||||||||||||| ||  || |||| ||||||||||||||||||||    
T  2550187 actaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttaggtaaa 2550247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 47 - 107
Target Start/End: Original strand, 13846013 - 13846073
Alignment:
Q  47 actaaatcatgaaaaatgttactaattatatccagtaacatttgaacaattgttaggtaaa 107  Q
    ||||||||| |||||||||||||||||| ||  || |||| ||||||||||||||||||||    
T  13846013 actaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttaggtaaa 13846073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 104
Target Start/End: Complemental strand, 2943291 - 2943236
Alignment:
Q  49 taaatcatgaaaaatgttactaattatatccagtaacatttgaacaattgttaggt 104  Q
    ||||||| |||||||||||||||||| ||  ||||||||| |||||||||||||||    
T  2943291 taaatcaagaaaaatgttactaattaaatttagtaacattcgaacaattgttaggt 2943236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 38 - 97
Target Start/End: Complemental strand, 27259533 - 27259474
Alignment:
Q  38 aaaaatattactaaatcatgaaaaatgttactaattatatccagtaacatttgaacaatt 97  Q
    |||| ||||||||||||| | |||||||||||||||| ||  ||||||||||||||||||    
T  27259533 aaaactattactaaatcaagcaaaatgttactaattaaatttagtaacatttgaacaatt 27259474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 38 - 107
Target Start/End: Complemental strand, 9633530 - 9633461
Alignment:
Q  38 aaaaatattactaaatcatgaaaaatgttactaattatatccagtaacatttgaacaattgttaggtaaa 107  Q
    |||| ||||||||||||   ||||||||||||||||| ||  ||| |||||| |||||||||||||||||    
T  9633530 aaaactattactaaatcgaaaaaaatgttactaattaaatttagttacatttaaacaattgttaggtaaa 9633461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 107
Target Start/End: Complemental strand, 1628026 - 1627966
Alignment:
Q  47 actaaatcatgaaaaatgttactaattatatccagtaacatttgaacaattgttaggtaaa 107  Q
    ||||||||| ||||||| |||||||||| ||  ||||||| |||||||||||||| |||||    
T  1628026 actaaatcaagaaaaatattactaattaaatttagtaacacttgaacaattgttaagtaaa 1627966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 107
Target Start/End: Original strand, 1654597 - 1654657
Alignment:
Q  47 actaaatcatgaaaaatgttactaattatatccagtaacatttgaacaattgttaggtaaa 107  Q
    ||||||||| |||||||||||||||||| ||  || |||| |||||||||||||| |||||    
T  1654597 actaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttaagtaaa 1654657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 107
Target Start/End: Complemental strand, 7407833 - 7407773
Alignment:
Q  47 actaaatcatgaaaaatgttactaattatatccagtaacatttgaacaattgttaggtaaa 107  Q
    ||||||||| ||||||| |||||||||| ||  || |||| ||||||||||||||||||||    
T  7407833 actaaatcaagaaaaatattactaattaaatttagcaacacttgaacaattgttaggtaaa 7407773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 38 - 107
Target Start/End: Complemental strand, 1613301 - 1613232
Alignment:
Q  38 aaaaatattactaaatcatgaaaaatgttactaattatatccagtaacatttgaacaattgttaggtaaa 107  Q
    |||||| | ||||||||| ||||||||||||||| || ||  ||||||| |||| ||||| |||||||||    
T  1613301 aaaaatgtaactaaatcaagaaaaatgttactaaataaatttagtaacagttgaccaatttttaggtaaa 1613232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 46 - 107
Target Start/End: Original strand, 36035309 - 36035370
Alignment:
Q  46 tactaaatcatgaaaaatgttactaattatatccagtaacatttgaacaattgttaggtaaa 107  Q
    |||||||||| |||||||  ||||||||| ||  ||||||| ||| ||||||||||||||||    
T  36035309 tactaaatcaagaaaaataatactaattaaatttagtaacaattgtacaattgttaggtaaa 36035370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 108
Target Start/End: Original strand, 26735688 - 26735716
Alignment:
Q  80 agtaacatttgaacaattgttaggtaaaa 108  Q
    |||||||||||||||||||||||||||||    
T  26735688 agtaacatttgaacaattgttaggtaaaa 26735716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 109
Target Start/End: Original strand, 35082995 - 35083059
Alignment:
Q  45 ttactaaatcatgaaaaatgttactaattatatccagtaacatttgaacaattgttaggtaaaac 109  Q
    |||| |||||| ||||||||||| ||| || ||  ||||| ||||||||||||||||| ||||||    
T  35082995 ttacaaaatcaagaaaaatgttagtaaataaatttagtaatatttgaacaattgttagataaaac 35083059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 47 - 107
Target Start/End: Original strand, 17037564 - 17037624
Alignment:
Q  47 actaaatcatgaaaaatgttactaattatatccagtaacatttgaacaattgttaggtaaa 107  Q
    ||||||||| |||||||||||||||||| ||  ||||||||||||||||||||||||||||    
T  17037564 actaaatcaagaaaaatgttactaattaaatttagtaacatttgaacaattgttaggtaaa 17037624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 46 - 105
Target Start/End: Original strand, 10869457 - 10869516
Alignment:
Q  46 tactaaatcatgaaaaatgttactaattatatccagtaacatttgaacaattgttaggta 105  Q
    |||||||||||||||| |||||||||||| ||  ||||||||||||||||||||||||||    
T  10869457 tactaaatcatgaaaattgttactaattaaatttagtaacatttgaacaattgttaggta 10869516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 50 - 107
Target Start/End: Complemental strand, 9333637 - 9333580
Alignment:
Q  50 aaatcatgaaaaatgttactaattatatccagtaacatttgaacaattgttaggtaaa 107  Q
    |||||| |||||||||||||||||| ||  |||||||||||| |||||||||||||||    
T  9333637 aaatcaagaaaaatgttactaattaaatttagtaacatttgagcaattgttaggtaaa 9333580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 39 - 88
Target Start/End: Original strand, 16411603 - 16411652
Alignment:
Q  39 aaaatattactaaatcatgaaaaatgttactaattatatccagtaacatt 88  Q
    ||||||||||||||||| ||||||||||||| |||||||| |||||||||    
T  16411603 aaaatattactaaatcacgaaaaatgttactgattatatctagtaacatt 16411652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 47 - 107
Target Start/End: Complemental strand, 5079143 - 5079083
Alignment:
Q  47 actaaatcatgaaaaatgttactaattatatccagtaacatttgaacaattgttaggtaaa 107  Q
    ||||||||| |||||||||||||||||| ||  || |||| ||||||||||||||||||||    
T  5079143 actaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttaggtaaa 5079083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 47 - 107
Target Start/End: Complemental strand, 12042256 - 12042196
Alignment:
Q  47 actaaatcatgaaaaatgttactaattatatccagtaacatttgaacaattgttaggtaaa 107  Q
    ||||||||| ||||||||||||| |||  ||  ||||||||||||||||||||||||||||    
T  12042256 actaaatcaagaaaaatgttactgattcaatttagtaacatttgaacaattgttaggtaaa 12042196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 47 - 107
Target Start/End: Original strand, 19985016 - 19985076
Alignment:
Q  47 actaaatcatgaaaaatgttactaattatatccagtaacatttgaacaattgttaggtaaa 107  Q
    ||||||||| | |||||||||||||||| ||  ||||||||||||| ||||||||||||||    
T  19985016 actaaatcaaggaaaatgttactaattagatttagtaacatttgaataattgttaggtaaa 19985076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 47 - 107
Target Start/End: Complemental strand, 31069041 - 31068982
Alignment:
Q  47 actaaatcatgaaaaatgttactaattatatccagtaacatttgaacaattgttaggtaaa 107  Q
    ||||||||| |||||||||||||||||| ||  ||||||| ||||||||||||||||||||    
T  31069041 actaaatcaagaaaaatgttactaattaaatttagtaaca-ttgaacaattgttaggtaaa 31068982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 107
Target Start/End: Original strand, 7410845 - 7410905
Alignment:
Q  47 actaaatcatgaaaaatgttactaattatatccagtaacatttgaacaattgttaggtaaa 107  Q
    |||||||||  ||||||||||||||||| ||  || |||| ||||||||||||||||||||    
T  7410845 actaaatcaaaaaaaatgttactaattaaatttagcaacacttgaacaattgttaggtaaa 7410905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 107
Target Start/End: Complemental strand, 9354464 - 9354408
Alignment:
Q  51 aatcatgaaaaatgttactaattatatccagtaacatttgaacaattgttaggtaaa 107  Q
    ||||| |||||||||||||||||| ||  | |||||||||| |||||||||||||||    
T  9354464 aatcaagaaaaatgttactaattaaatttaataacatttgagcaattgttaggtaaa 9354408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 107
Target Start/End: Complemental strand, 40402088 - 40402028
Alignment:
Q  47 actaaatcatgaaaaatgttactaattatatccagtaacatttgaacaattgttaggtaaa 107  Q
    ||||||| | |||||||||||||||||| ||  ||| || |||||||||||||||||||||    
T  40402088 actaaataaagaaaaatgttactaattaaatttagttacgtttgaacaattgttaggtaaa 40402028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 56 - 107
Target Start/End: Original strand, 42076077 - 42076128
Alignment:
Q  56 tgaaaaatgttactaattatatccagtaacatttgaacaattgttaggtaaa 107  Q
    |||||| |||||||||||| ||  ||||||||||||||||||||||| ||||    
T  42076077 tgaaaattgttactaattaaatttagtaacatttgaacaattgttagataaa 42076128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 47 - 88
Target Start/End: Complemental strand, 11833320 - 11833279
Alignment:
Q  47 actaaatcatgaaaaatgttactaattatatccagtaacatt 88  Q
    ||||||||||||||||||||| |||||||||| || ||||||    
T  11833320 actaaatcatgaaaaatgttattaattatatctagcaacatt 11833279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 107
Target Start/End: Original strand, 30786292 - 30786348
Alignment:
Q  51 aatcatgaaaaatgttactaattatatccagtaacatttgaacaattgttaggtaaa 107  Q
    ||||| ||||||||||||| |||  ||  ||||||||||||| ||||||||||||||    
T  30786292 aatcaagaaaaatgttactgattcaatttagtaacatttgaataattgttaggtaaa 30786348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 105
Target Start/End: Original strand, 37233063 - 37233111
Alignment:
Q  57 gaaaaatgttactaattatatccagtaacatttgaacaattgttaggta 105  Q
    |||||| ||||||||||| ||  |||||||||||| |||||||||||||    
T  37233063 gaaaaaagttactaattaaatttagtaacatttgagcaattgttaggta 37233111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 38 - 109
Target Start/End: Complemental strand, 5651033 - 5650962
Alignment:
Q  38 aaaaatattactaaatcatgaaaaatgttactaattatatccagtaacatttgaacaattgttaggtaaaac 109  Q
    |||| ||||||||||||| |||||||||||||||||  ||  || |||||||||||||||||||||||||||    
T  5651033 aaaactattactaaatcaagaaaaatgttactaattcaatttagcaacatttgaacaattgttaggtaaaac 5650962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 38 - 107
Target Start/End: Complemental strand, 6801918 - 6801849
Alignment:
Q  38 aaaaatattactaaatcatgaaaaatgttactaattatatccagtaacatttgaacaattgttaggtaaa 107  Q
    |||| |||||||||||||  ||||||||||||||||| ||  ||||||| ||||||||||||||||||||    
T  6801918 aaaactattactaaatcaataaaaatgttactaattaaatttagtaacagttgaacaattgttaggtaaa 6801849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 47 - 115
Target Start/End: Original strand, 25638828 - 25638896
Alignment:
Q  47 actaaatcatgaaaaatgttactaattatatccagtaacatttgaacaattgttaggtaaaactcatgt 115  Q
    ||||||||| |||||||||||||||||| ||  || |||| |||||||||||||||||||||| |||||    
T  25638828 actaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttaggtaaaacccatgt 25638896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 47 - 107
Target Start/End: Original strand, 6403614 - 6403674
Alignment:
Q  47 actaaatcatgaaaaatgttactaattatatccagtaacatttgaacaattgttaggtaaa 107  Q
    ||||||| | |||||||||||||||||| ||  |||||||||||| |||||||||||||||    
T  6403614 actaaattaagaaaaatgttactaattaaatttagtaacatttgagcaattgttaggtaaa 6403674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 47 - 107
Target Start/End: Complemental strand, 28249154 - 28249094
Alignment:
Q  47 actaaatcatgaaaaatgttactaattatatccagtaacatttgaacaattgttaggtaaa 107  Q
    ||||||||| |||||||||||||||||| ||  || |||| ||||||||||||||||||||    
T  28249154 actaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttaggtaaa 28249094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 47 - 107
Target Start/End: Original strand, 29345452 - 29345512
Alignment:
Q  47 actaaatcatgaaaaatgttactaattatatccagtaacatttgaacaattgttaggtaaa 107  Q
    ||||||||| ||||||| |||||||||| ||  |||||| |||||||||||||||||||||    
T  29345452 actaaatcaagaaaaatattactaattaaatttagtaacctttgaacaattgttaggtaaa 29345512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 47 - 107
Target Start/End: Complemental strand, 45356191 - 45356131
Alignment:
Q  47 actaaatcatgaaaaatgttactaattatatccagtaacatttgaacaattgttaggtaaa 107  Q
    ||||||||| |||||||||||||||||| ||  || |||| ||||||||||||||||||||    
T  45356191 actaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttaggtaaa 45356131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 107
Target Start/End: Complemental strand, 17634550 - 17634490
Alignment:
Q  47 actaaatcatgaaaaatgttactaattatatccagtaacatttgaacaattgttaggtaaa 107  Q
    ||||||||| |||||||||||||||||| ||  | ||||| ||||||||||| ||||||||    
T  17634550 actaaatcaagaaaaatgttactaattaaatttaataacacttgaacaattgataggtaaa 17634490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 38 - 115
Target Start/End: Original strand, 14997633 - 14997710
Alignment:
Q  38 aaaaatattactaaatcatgaaaaatgttactaattatatccagtaacatttgaacaattgttaggtaaaactcatgt 115  Q
    |||| ||||||||| ||| |||||||||||||  ||| |   ||||||||||| | |||||||||||||||| |||||    
T  14997633 aaaattattactaattcaagaaaaatgttactggttaaaattagtaacatttgtagaattgttaggtaaaacccatgt 14997710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 50 - 107
Target Start/End: Original strand, 29553653 - 29553710
Alignment:
Q  50 aaatcatgaaaaatgttactaattatatccagtaacatttgaacaattgttaggtaaa 107  Q
    |||||| |||||||||||||||||| ||  || ||||||||| |||||||||| ||||    
T  29553653 aaatcaagaaaaatgttactaattaaatttagcaacatttgagcaattgttagttaaa 29553710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 50 - 107
Target Start/End: Original strand, 31347373 - 31347430
Alignment:
Q  50 aaatcatgaaaaatgttactaattatatccagtaacatttgaacaattgttaggtaaa 107  Q
    |||||| |||||||| ||||||||| ||  |||||||||||| |||||||||| ||||    
T  31347373 aaatcaagaaaaatgctactaattaaatttagtaacatttgatcaattgttagataaa 31347430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 109
Target Start/End: Original strand, 5000698 - 5000762
Alignment:
Q  45 ttactaaatcatgaaaaatgttactaattatatccagtaacatttgaacaattgttaggtaaaac 109  Q
    |||||| ||||| |||| |||||||||||| ||  |||||||||||| |||| ||||||| ||||    
T  5000698 ttactacatcatcaaaattgttactaattaaatttagtaacatttgagcaatagttaggtgaaac 5000762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 45 - 103
Target Start/End: Original strand, 30089754 - 30089812
Alignment:
Q  45 ttactaaatcatgaaaaatgttactaattatatccagtaacatttgaacaattgttagg 103  Q
    ||||||||||| ||||||||||||| |||||||  ||||||||||||||||||||||||    
T  30089754 ttactaaatcaagaaaaatgttactgattatatttagtaacatttgaacaattgttagg 30089812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 50 - 139
Target Start/End: Complemental strand, 26608615 - 26608525
Alignment:
Q  50 aaatcatgaaaaatgttactaattatatccagtaacatttgaacaattgttaggtaaaactcatg-taataaggagttttagtagcatttt 139  Q
    |||||| ||||||||||||| |||| ||  ||||||||||||||||||||||| |||| | |||| || ||| ||| |||||| |||||||    
T  26608615 aaatcaagaaaaatgttactgattaaatttagtaacatttgaacaattgttagataaagcccatgttactaaagagctttagttgcatttt 26608525  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 38 - 107
Target Start/End: Complemental strand, 26205503 - 26205434
Alignment:
Q  38 aaaaatattactaaatcatgaaaaatgttactaattatatccagtaacatttgaacaattgttaggtaaa 107  Q
    |||| ||| ||||||||| |||||||||||||||||| ||  ||||||| ||||| ||||| ||||||||    
T  26205503 aaaattataactaaatcaagaaaaatgttactaattaaatttagtaacacttgaaaaattggtaggtaaa 26205434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 38 - 107
Target Start/End: Complemental strand, 29932436 - 29932368
Alignment:
Q  38 aaaaatattactaaatcatgaaaaatgttactaattatatccagtaacatttgaacaattgttaggtaaa 107  Q
    |||||||||||||||||  ||||||||||| | |||||| | | ||||||||| ||||||||||||||||    
T  29932436 aaaaatattactaaatcgcgaaaaatgtta-tgattataactaataacatttggacaattgttaggtaaa 29932368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 107
Target Start/End: Complemental strand, 4685482 - 4685422
Alignment:
Q  47 actaaatcatgaaaaatgttactaattatatccagtaacatttgaacaattgttaggtaaa 107  Q
    ||||||||| ||||||||||| |||||| ||  || |||| ||||||||||||||||||||    
T  4685482 actaaatcaagaaaaatgttagtaattaaatttagcaacacttgaacaattgttaggtaaa 4685422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 115
Target Start/End: Original strand, 16086510 - 16086576
Alignment:
Q  49 taaatcatgaaaaatgttactaattatatccagtaacatttgaacaattgttaggtaaaactcatgt 115  Q
    |||||||  |||| |||||||||||| ||  | ||||||||||| |||||||||||||| |||||||    
T  16086510 taaatcagaaaaactgttactaattaaatttaataacatttgaataattgttaggtaaagctcatgt 16086576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 99
Target Start/End: Complemental strand, 26619184 - 26619130
Alignment:
Q  45 ttactaaatcatgaaaaatgttactaattatatccagtaacatttgaacaattgt 99  Q
    ||||||||||| ||||||||||||| |||| ||  | ||||||||||||||||||    
T  26619184 ttactaaatcaagaaaaatgttactgattaaatttattaacatttgaacaattgt 26619130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 107
Target Start/End: Original strand, 27135960 - 27136010
Alignment:
Q  57 gaaaaatgttactaattatatccagtaacatttgaacaattgttaggtaaa 107  Q
    ||||||||||| | |||||||| | ||||||||||||||||||||| ||||    
T  27135960 gaaaaatgttattgattatatctaataacatttgaacaattgttagataaa 27136010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 38 - 99
Target Start/End: Original strand, 3374313 - 3374374
Alignment:
Q  38 aaaaatattactaaatcatgaaaaatgttactaattatatccagtaacatttgaacaattgt 99  Q
    |||| |||||| |||||| ||||||||||| | |||| ||  ||||||||||||||||||||    
T  3374313 aaaactattaccaaatcaagaaaaatgttattgattaaattaagtaacatttgaacaattgt 3374374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 107
Target Start/End: Complemental strand, 9242563 - 9242503
Alignment:
Q  47 actaaatcatgaaaaatgttactaattatatccagtaacatttgaacaattgttaggtaaa 107  Q
    ||||||||| ||||| |||||||||||| ||   |||||| ||||||||||||||| ||||    
T  9242563 actaaatcaagaaaattgttactaattaaattttgtaacacttgaacaattgttagataaa 9242503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 107
Target Start/End: Original strand, 10022145 - 10022205
Alignment:
Q  47 actaaatcatgaaaaatgttactaattatatccagtaacatttgaacaattgttaggtaaa 107  Q
    |||||||||  |||||||||||||||||  |  |||||||  |||||||||||||||||||    
T  10022145 actaaatcagaaaaaatgttactaattaagtttagtaacacatgaacaattgttaggtaaa 10022205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 107
Target Start/End: Complemental strand, 20277439 - 20277379
Alignment:
Q  47 actaaatcatgaaaaatgttactaattatatccagtaacatttgaacaattgttaggtaaa 107  Q
    |||||||||  |||||| ||| |||||| ||  |||||||||| |||||||||||||||||    
T  20277439 actaaatcaaaaaaaatattattaattaaatttagtaacatttaaacaattgttaggtaaa 20277379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 45 - 107
Target Start/End: Complemental strand, 4904221 - 4904159
Alignment:
Q  45 ttactaaatcatgaaaaatgttactaattatatccagtaacatttgaacaattgttaggtaaa 107  Q
    ||||||||||||||||||||||||| |||| ||  ||||||||||| ||||||||||||||||    
T  4904221 ttactaaatcatgaaaaatgttactgattaaatttagtaacatttgtacaattgttaggtaaa 4904159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 37 - 106
Target Start/End: Complemental strand, 24559084 - 24559015
Alignment:
Q  37 aaaaaatattactaaatcatgaaaaatgttactaattatatccagtaacatttgaacaattgttaggtaa 106  Q
    ||||||| | ||||||||| |||||||||||||||||| ||  |||||||||||||| ||||||||||||    
T  24559084 aaaaaatgtaactaaatcaagaaaaatgttactaattaaatttagtaacatttgaacgattgttaggtaa 24559015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 51 - 107
Target Start/End: Complemental strand, 18941733 - 18941677
Alignment:
Q  51 aatcatgaaaaatgttactaattatatccagtaacatttgaacaattgttaggtaaa 107  Q
    ||||| |||||||||| ||||||||||||| |||||||||||||||||||| |||||    
T  18941733 aatcacgaaaaatgttgctaattatatccaataacatttgaacaattgttaagtaaa 18941677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 52 - 98
Target Start/End: Original strand, 45641677 - 45641723
Alignment:
Q  52 atcatgaaaaatgttactaattatatccagtaacatttgaacaattg 98  Q
    ||||||||||||||||||||||||||| ||||||||||| |||||||    
T  45641677 atcatgaaaaatgttactaattatatctagtaacatttgcacaattg 45641723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 104
Target Start/End: Original strand, 48464059 - 48464118
Alignment:
Q  45 ttactaaatcatgaaaaatgttactaattatatccagtaacatttgaacaattgttaggt 104  Q
    ||||||||| |  ||||||||||||||||| ||  |||||||||||||||||||||||||    
T  48464059 ttactaaataaataaaaatgttactaattaaatttagtaacatttgaacaattgttaggt 48464118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 107
Target Start/End: Original strand, 43600288 - 43600348
Alignment:
Q  47 actaaatcatgaaaaatgttactaattatatccagtaacatttgaacaattgttaggtaaa 107  Q
    ||||||||| |||||||||||||||||| ||  || || | ||||||||||||||||||||    
T  43600288 actaaatcaagaaaaatgttactaattaaatttagcaaaacttgaacaattgttaggtaaa 43600348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 107
Target Start/End: Complemental strand, 47066113 - 47066053
Alignment:
Q  47 actaaatcatgaaaaatgttactaattatatccagtaacatttgaacaattgttaggtaaa 107  Q
    ||||||||| ||||||||||| |||||| ||  |||||||  |||||||||||||||||||    
T  47066113 actaaatcaagaaaaatgttagtaattaaatttagtaacacctgaacaattgttaggtaaa 47066053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 107
Target Start/End: Complemental strand, 4881150 - 4881088
Alignment:
Q  45 ttactaaatcatgaaaaatgttactaattatatccagtaacatttgaacaattgttaggtaaa 107  Q
    ||||||||||| ||||||||||||| |||| ||  ||||| ||||| | ||||||||||||||    
T  4881150 ttactaaatcaagaaaaatgttactgattaaatttagtaatatttgtataattgttaggtaaa 4881088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 37 - 107
Target Start/End: Original strand, 41573404 - 41573474
Alignment:
Q  37 aaaaaatattactaaatcatgaaaaatgttactaattatatccagtaacatttgaacaattgttaggtaaa 107  Q
    ||||||| | ||||||||| |||||||||||||||||| ||  ||||||| || |||||||||||||||||    
T  41573404 aaaaaatgtaactaaatcaagaaaaatgttactaattaaatttagtaacagttaaacaattgttaggtaaa 41573474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 38 - 107
Target Start/End: Original strand, 24479164 - 24479233
Alignment:
Q  38 aaaaatattactaaatcatgaaaaatgttactaattatatccagtaacatttgaacaattgttaggtaaa 107  Q
    |||| ||||||||||||| || || |||||||||||| ||  |||||||||||||||||| |||||||||    
T  24479164 aaaattattactaaatcaagataactgttactaattaaatttagtaacatttgaacaattcttaggtaaa 24479233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 45 - 107
Target Start/End: Original strand, 11017476 - 11017538
Alignment:
Q  45 ttactaaatcatgaaaaatgttactaattatatccagtaacatttgaacaattgttaggtaaa 107  Q
    ||||||||| | ||||| |||||||||||| ||  |||||||||||| |||||||||||||||    
T  11017476 ttactaaataaagaaaattgttactaattaaatttagtaacatttgaccaattgttaggtaaa 11017538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 38 - 107
Target Start/End: Complemental strand, 15540387 - 15540318
Alignment:
Q  38 aaaaatattactaaatcatgaaaa-atgttactaattatatccagtaacatttgaacaattgttaggtaaa 107  Q
    |||| |||||||||||||  |||| ||||||||||||||||| |||||||||| |||||||| ||||||||    
T  15540387 aaaagtattactaaatcacaaaaatatgttactaattatatctagtaacattt-aacaattgataggtaaa 15540318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 38 - 107
Target Start/End: Original strand, 40016603 - 40016672
Alignment:
Q  38 aaaaatattactaaatcatgaaaaatgttactaattatatccagtaacatttgaacaattgttaggtaaa 107  Q
    |||| ||||| ||||||| | ||||||||||| |||| ||  ||||||||||||| ||||||||||||||    
T  40016603 aaaattattattaaatcaagtaaaatgttactgattaaatttagtaacatttgaataattgttaggtaaa 40016672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 107
Target Start/End: Original strand, 30267024 - 30267084
Alignment:
Q  47 actaaatcatgaaaaatgttactaattatatccagtaacatttgaacaattgttaggtaaa 107  Q
    ||||||||| ||||||||||| |||||| ||  |||||||  |||||||||||||||||||    
T  30267024 actaaatcaagaaaaatgttagtaattaaatttagtaacacctgaacaattgttaggtaaa 30267084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 107
Target Start/End: Complemental strand, 31342795 - 31342735
Alignment:
Q  47 actaaatcatgaaaaatgttactaattatatccagtaacatttgaacaattgttaggtaaa 107  Q
    ||||||||| |||||||||||||||||| ||  || |||| ||||||||||||||| ||||    
T  31342795 actaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttagataaa 31342735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 107
Target Start/End: Original strand, 15513690 - 15513748
Alignment:
Q  49 taaatcatgaaaaatgttactaattatatccagtaacatttgaacaattgttaggtaaa 107  Q
    ||||||| |||||||||||||| ||| ||   |||||| ||||||||||||||||||||    
T  15513690 taaatcaagaaaaatgttactagttaaattttgtaacacttgaacaattgttaggtaaa 15513748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 38 - 107
Target Start/End: Original strand, 7702441 - 7702510
Alignment:
Q  38 aaaaatattactaaatcatgaaaaatgttactaattatatccagtaacatttgaacaattgttaggtaaa 107  Q
    |||| ||||||||||| |  |||||||||| |||||| |   ||||||||||| ||||||||||||||||    
T  7702441 aaaattattactaaattaaaaaaaatgttattaattaaaattagtaacatttgtacaattgttaggtaaa 7702510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 107
Target Start/End: Original strand, 7718206 - 7718266
Alignment:
Q  47 actaaatcatgaaaaatgttactaattatatccagtaacatttgaacaattgttaggtaaa 107  Q
    ||||||||| ||||||| |||||||||| ||  |||||||  |||||||||||||| ||||    
T  7718206 actaaatcaagaaaaatattactaattaaatttagtaacacatgaacaattgttagataaa 7718266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0576 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0576
Description:

Target: scaffold0576; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 47 - 107
Target Start/End: Original strand, 6720 - 6780
Alignment:
Q  47 actaaatcatgaaaaatgttactaattatatccagtaacatttgaacaattgttaggtaaa 107  Q
    ||||||||| |||||||||||||||||| ||  || |||| ||||||||||||||||||||    
T  6720 actaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttaggtaaa 6780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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