View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17241_high_52 (Length: 236)
Name: NF17241_high_52
Description: NF17241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17241_high_52 |
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Alignment Details
Target: chr4 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 11 - 222
Target Start/End: Original strand, 43378412 - 43378620
Alignment:
| Q |
11 |
ttttaatacgtagaagttatcttaaacgtagaagaaacattttccatttttaatttaagtctattgtacattgtattaatatacaagtaagagtaacact |
110 |
Q |
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| T |
43378412 |
ttttaatacgtagaagttatcttaaacgtagaagaaacattttccatttttaatttaagtctattgtacattgtatta---tacaagtaagagtaacact |
43378508 |
T |
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| Q |
111 |
tttttaatagtgttcattacaccgaataaaatgaggtgccgggccctaacctataagtccatgctcccactcatactgaccatatatattgaattatttt |
210 |
Q |
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| T |
43378509 |
tttttaatagtgttcattacacctaataaaatgaggtgccgggccctaacctataagtccatgctcccactcatactacccatatatattgaattatttt |
43378608 |
T |
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| Q |
211 |
atcattcaatat |
222 |
Q |
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|||||||||||| |
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| T |
43378609 |
atcattcaatat |
43378620 |
T |
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