View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17241_high_9 (Length: 478)

Name: NF17241_high_9
Description: NF17241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17241_high_9
NF17241_high_9
[»] scaffold0440 (1 HSPs)
scaffold0440 (1-467)||(8304-8773)
[»] chr1 (14 HSPs)
chr1 (68-189)||(1954398-1954519)
chr1 (182-314)||(1954643-1954776)
chr1 (336-416)||(1955107-1955187)
chr1 (17-109)||(28631754-28631846)
chr1 (17-109)||(28565436-28565528)
chr1 (33-109)||(15317589-15317665)
chr1 (303-354)||(29693118-29693169)
chr1 (65-109)||(12714915-12714959)
chr1 (65-118)||(23909771-23909824)
chr1 (17-109)||(13662125-13662218)
chr1 (235-271)||(40831315-40831351)
chr1 (414-462)||(1955208-1955258)
chr1 (27-118)||(34265892-34265983)
chr1 (76-112)||(9112131-9112167)
[»] chr5 (12 HSPs)
chr5 (8-109)||(9702652-9702753)
chr5 (302-354)||(13596631-13596683)
chr5 (74-132)||(18037294-18037352)
chr5 (301-354)||(22917105-22917158)
chr5 (65-109)||(290873-290917)
chr5 (30-117)||(2366859-2366946)
chr5 (27-118)||(32977118-32977209)
chr5 (76-132)||(37464499-37464555)
chr5 (65-118)||(38041546-38041599)
chr5 (65-118)||(39169401-39169454)
chr5 (184-220)||(10000833-10000869)
chr5 (17-118)||(19365879-19365980)
[»] scaffold0088 (1 HSPs)
scaffold0088 (17-109)||(52699-52791)
[»] chr8 (10 HSPs)
chr8 (17-109)||(12249918-12250010)
chr8 (17-109)||(23626062-23626154)
chr8 (17-109)||(39445197-39445289)
chr8 (17-118)||(27272620-27272721)
chr8 (78-132)||(12661025-12661079)
chr8 (66-110)||(4634842-4634886)
chr8 (76-132)||(20662984-20663040)
chr8 (76-132)||(44213101-44213157)
chr8 (17-108)||(41907954-41908045)
chr8 (76-132)||(30548347-30548403)
[»] chr7 (15 HSPs)
chr7 (17-109)||(9226027-9226119)
chr7 (17-109)||(38434284-38434376)
chr7 (17-109)||(42996884-42996976)
chr7 (76-132)||(33230018-33230074)
chr7 (76-132)||(20765530-20765586)
chr7 (76-132)||(29491108-29491164)
chr7 (76-132)||(34282160-34282216)
chr7 (65-131)||(8998425-8998491)
chr7 (65-118)||(23476642-23476695)
chr7 (65-118)||(45121964-45122017)
chr7 (76-132)||(19033712-19033768)
chr7 (76-132)||(20720868-20720924)
chr7 (301-344)||(25730852-25730895)
chr7 (9-92)||(1484767-1484850)
chr7 (65-109)||(42244635-42244679)
[»] chr6 (11 HSPs)
chr6 (301-354)||(22720893-22720946)
chr6 (27-132)||(22975734-22975839)
chr6 (27-132)||(23812562-23812667)
chr6 (17-109)||(1932283-1932375)
chr6 (71-132)||(33979104-33979165)
chr6 (76-132)||(250043-250099)
chr6 (76-132)||(12579843-12579899)
chr6 (8-132)||(2624719-2624843)
chr6 (77-132)||(3052072-3052127)
chr6 (17-109)||(4425851-4425943)
chr6 (7-118)||(33300602-33300713)
[»] chr4 (16 HSPs)
chr4 (17-118)||(1975328-1975429)
chr4 (17-109)||(26870035-26870127)
chr4 (65-125)||(28120239-28120299)
chr4 (65-131)||(49711678-49711744)
chr4 (76-132)||(10259390-10259446)
chr4 (76-132)||(24077459-24077515)
chr4 (76-132)||(26924329-26924385)
chr4 (76-132)||(43332530-43332586)
chr4 (76-132)||(51452597-51452653)
chr4 (71-118)||(19591014-19591061)
chr4 (65-112)||(23992374-23992421)
chr4 (76-132)||(21565009-21565065)
chr4 (132-170)||(45913753-45913791)
chr4 (27-118)||(56541700-56541791)
chr4 (17-109)||(3839101-3839193)
chr4 (17-57)||(16895945-16895985)
[»] chr3 (10 HSPs)
chr3 (27-132)||(30766426-30766531)
chr3 (7-118)||(22759053-22759163)
chr3 (17-118)||(44186865-44186966)
chr3 (77-132)||(44072774-44072829)
chr3 (65-108)||(54792746-54792789)
chr3 (77-118)||(6093210-6093251)
chr3 (84-132)||(918817-918865)
chr3 (65-109)||(12157763-12157807)
chr3 (17-109)||(16496319-16496412)
chr3 (65-109)||(35437198-35437242)
[»] scaffold0051 (1 HSPs)
scaffold0051 (17-109)||(61656-61748)
[»] chr2 (10 HSPs)
chr2 (65-132)||(24278973-24279040)
chr2 (33-109)||(17026060-17026136)
chr2 (31-109)||(17092245-17092323)
chr2 (76-132)||(3711077-3711133)
chr2 (76-132)||(11866283-11866339)
chr2 (17-108)||(25124050-25124141)
chr2 (71-118)||(1691488-1691535)
chr2 (71-118)||(7984046-7984093)
chr2 (77-132)||(35357677-35357732)
chr2 (78-118)||(32726057-32726097)
[»] scaffold0103 (1 HSPs)
scaffold0103 (17-132)||(12943-13058)
[»] scaffold0499 (1 HSPs)
scaffold0499 (65-118)||(10700-10753)
[»] scaffold0073 (1 HSPs)
scaffold0073 (65-131)||(33442-33508)
[»] scaffold0006 (1 HSPs)
scaffold0006 (17-109)||(151887-151980)
[»] scaffold0004 (1 HSPs)
scaffold0004 (65-118)||(81020-81073)


Alignment Details
Target: scaffold0440 (Bit Score: 414; Significance: 0; HSPs: 1)
Name: scaffold0440
Description:

Target: scaffold0440; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 1 - 467
Target Start/End: Original strand, 8304 - 8773
Alignment:
Q  1 tcaaataataactggctacagacccatgcttcgcacgtgttgaataacatatcttgtnnnnnnnttgttccaaaggaaaaataagcaaattaatgaatat 100  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||       |||||||||||||||||| |||||||||||||||||    
T  8304 tcaaataataactggctacagacccgtgcttcgcacgtgttgaataacatatcttgtaaaaaaattgttccaaaggaaaaatgagcaaattaatgaatat 8403  T
Q  101 tgcacaaacattagaaatctatatccaaatatgaatccttcaaagtcgacagcaaaaattcttaggtctacctttatagttttgtcaaattcttgttatt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8404 tgcacaaacattagaaatctatatccaaatatgaatccttcaaagtcgacagcaaaaattcttaggtctacctttatagttttgtcaaattcttgttatt 8503  T
Q  201 tctttaggactaaaatcaatctataggttgtttcaatggaaaatataaatgagggccaaaaaatagatttattc-tatgagcaatgaaaagcacacagtg 299  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  8504 tctttaggactaaaatcaatctataggttgtttcaatggaaaatataaatgagggccaaaaaatagatttattcatatgagcaatgaaaagcacacagtg 8603  T
Q  300 agtttcgacaaatcacatatgttttaactgctcacactcatatatcaaatatttatatatcacacggtagagctataatctctcaaatgcatgacaaact 399  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8604 agtttcgacaaatcacatatgttttaactgctcacactcatatatcaaatatttatatatcacacggtagagctataatctctcaaatgcatgacaaact 8703  T
Q  400 attcttgcaaactgtcactatatt--tatatgtaccatgtcccaaaccttaatttggatccaactctata 467  Q
    ||||||||||||||||||||||||  ||||||||| ||||||||||| ||||||||||||||||||||||    
T  8704 attcttgcaaactgtcactatatttatatatgtactatgtcccaaacattaatttggatccaactctata 8773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 102; Significance: 2e-50; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 68 - 189
Target Start/End: Original strand, 1954398 - 1954519
Alignment:
Q  68 ttccaaaggaaaaataagcaaattaatgaatattgcacaaacattagaaatctatatccaaatatgaatccttcaaagtcgacagcaaaaattcttaggt 167  Q
    |||||||| |||||| |||||||||||||||||| |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  1954398 ttccaaagaaaaaatgagcaaattaatgaatattacacaaatattagaaatctttatccaaatatgaatccttcaaagtcgacagcaaaaattcttaggt 1954497  T
Q  168 ctacctttatagttttgtcaaa 189  Q
    ||||||||||||||||||||||    
T  1954498 ctacctttatagttttgtcaaa 1954519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 182 - 314
Target Start/End: Original strand, 1954643 - 1954776
Alignment:
Q  182 ttgtcaaattcttgttatttctttaggactaaaatcaatctataggttgtttcaatggaaaatataaatga-gggccaaaaaatagatttattc-tatga 279  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||  ||||||||||||||||| |||||    
T  1954643 ttgtcaaat-cttgttatttctttaggactaaaatcaatctataggttgtttcaatggaaaatataaatgaggggagaaaaaatagatttattcatatga 1954741  T
Q  280 gcaatgaaaagcacacagtgagtttcgacaaatca 314  Q
    |||| ||||||||||||  ||||||||||||||||    
T  1954742 gcaaagaaaagcacacatcgagtttcgacaaatca 1954776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 336 - 416
Target Start/End: Original strand, 1955107 - 1955187
Alignment:
Q  336 ctcatatatcaaatatttatatatcacacggtagagctataatctctcaaatgcatgacaaactattcttgcaaactgtca 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||    
T  1955107 ctcatatatcaaatatttatatatcacacggtagagctataatctctcaaatgcatgacgaactattcttgcaaattgtca 1955187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 17 - 109
Target Start/End: Complemental strand, 28631846 - 28631754
Alignment:
Q  17 tacagacccatgcttcgcacgtgttgaataacatatcttgtnnnnnnnttgttccaaaggaaaaataagcaaattaatgaatattgcacaaac 109  Q
    |||| |||| ||||||||||| |||||||||||||||||||       |||||||||||||||||| ||||||||||||||||||||||||||    
T  28631846 tacaaacccgtgcttcgcacgggttgaataacatatcttgtaaaaaatttgttccaaaggaaaaatgagcaaattaatgaatattgcacaaac 28631754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 17 - 109
Target Start/End: Original strand, 28565436 - 28565528
Alignment:
Q  17 tacagacccatgcttcgcacgtgttgaataacatatcttgtnnnnnnnttgttccaaaggaaaaataagcaaattaatgaatattgcacaaac 109  Q
    |||| |||| ||||||||||| |||||||||| ||||||||       |||||||||||||||||| ||||||||||||||||||||||||||    
T  28565436 tacaaacccgtgcttcgcacgggttgaataacgtatcttgtaaaaaaattgttccaaaggaaaaatgagcaaattaatgaatattgcacaaac 28565528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 33 - 109
Target Start/End: Complemental strand, 15317665 - 15317589
Alignment:
Q  33 gcacgtgttgaataacatatcttgtnnnnnnnttgttccaaaggaaaaataagcaaattaatgaatattgcacaaac 109  Q
    ||||| |||||||||| ||||||||       |||||||||||||||||| ||||||||||||||||||||||||||    
T  15317665 gcacgggttgaataacgtatcttgtaaaaaaattgttccaaaggaaaaatgagcaaattaatgaatattgcacaaac 15317589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 303 - 354
Target Start/End: Complemental strand, 29693169 - 29693118
Alignment:
Q  303 ttcgacaaatcacatatgttttaactgctcacactcatatatcaaatattta 354  Q
    ||||||||||||||||||||||||||||| | ||||||||||||||||||||    
T  29693169 ttcgacaaatcacatatgttttaactgctgatactcatatatcaaatattta 29693118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 65 - 109
Target Start/End: Complemental strand, 12714959 - 12714915
Alignment:
Q  65 ttgttccaaaggaaaaataagcaaattaatgaatattgcacaaac 109  Q
    |||||||||||||||||| ||||||||||||||||||||||||||    
T  12714959 ttgttccaaaggaaaaatgagcaaattaatgaatattgcacaaac 12714915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 65 - 118
Target Start/End: Original strand, 23909771 - 23909824
Alignment:
Q  65 ttgttccaaaggaaaaataagcaaattaatgaatattgcacaaacattagaaat 118  Q
    ||||| ||||| |||||| |||||||||| ||||||||||||||||||||||||    
T  23909771 ttgtttcaaagaaaaaatgagcaaattaaggaatattgcacaaacattagaaat 23909824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 17 - 109
Target Start/End: Original strand, 13662125 - 13662218
Alignment:
Q  17 tacagacccatgcttcgcacgtgttgaataacatatcttgtnnnnnnn-ttgttccaaaggaaaaataagcaaattaatgaatattgcacaaac 109  Q
    |||| |||| ||||||||||| |||||||||||||||||||        || ||||||||||||||| | ||||||||||||||||| ||||||    
T  13662125 tacaaacccgtgcttcgcacgggttgaataacatatcttgtaaaaaaaattattccaaaggaaaaatgatcaaattaatgaatattgtacaaac 13662218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 235 - 271
Target Start/End: Complemental strand, 40831351 - 40831315
Alignment:
Q  235 aatggaaaatataaatgagggccaaaaaatagattta 271  Q
    |||||||||||||||||||||||||||||||||||||    
T  40831351 aatggaaaatataaatgagggccaaaaaatagattta 40831315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 414 - 462
Target Start/End: Original strand, 1955208 - 1955258
Alignment:
Q  414 tcactatatttatat--gtaccatgtcccaaaccttaatttggatccaact 462  Q
    |||||||||||||||  |||| |||||||||||||||||||||||||||||    
T  1955208 tcactatatttatatatgtactatgtcccaaaccttaatttggatccaact 1955258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 27 - 118
Target Start/End: Original strand, 34265892 - 34265983
Alignment:
Q  27 tgcttcgcacgtgttgaataacatatcttgtnnnnnnnttgttccaaaggaaaaataagcaaattaatgaatattgcacaaacattagaaat 118  Q
    ||||||||||| |||||||| | ||| ||||       ||||| ||||| |||||| |||||||||| ||||||| ||||||||||||||||    
T  34265892 tgcttcgcacgggttgaatatcgtatattgtaaaaaaattgtttcaaagaaaaaatgagcaaattaaggaatatttcacaaacattagaaat 34265983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 76 - 112
Target Start/End: Complemental strand, 9112167 - 9112131
Alignment:
Q  76 gaaaaataagcaaattaatgaatattgcacaaacatt 112  Q
    ||||||| ||||||||||| |||||||||||||||||    
T  9112167 gaaaaatgagcaaattaataaatattgcacaaacatt 9112131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 1e-23; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 8 - 109
Target Start/End: Complemental strand, 9702753 - 9702652
Alignment:
Q  8 ataactggctacagacccatgcttcgcacgtgttgaataacatatcttgtnnnnnnnttgttccaaaggaaaaataagcaaattaatgaatattgcacaa 107  Q
    |||||| | |||| |||| ||||||||||| |||||||||||||||||||       |||||||||||||||||| ||||||||||||||||||||||||    
T  9702753 ataactagttacaaacccgtgcttcgcacgggttgaataacatatcttgtaaaaaatttgttccaaaggaaaaatgagcaaattaatgaatattgcacaa 9702654  T
Q  108 ac 109  Q
    ||    
T  9702653 ac 9702652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 302 - 354
Target Start/End: Complemental strand, 13596683 - 13596631
Alignment:
Q  302 tttcgacaaatcacatatgttttaactgctcacactcatatatcaaatattta 354  Q
    |||||||||||||||||||||||||||||| | ||||||||||||||||||||    
T  13596683 tttcgacaaatcacatatgttttaactgctgatactcatatatcaaatattta 13596631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 74 - 132
Target Start/End: Original strand, 18037294 - 18037352
Alignment:
Q  74 aggaaaaataagcaaattaatgaatattgcacaaacattagaaatctatatccaaatat 132  Q
    ||||||||| |||||||||||||||||||||||||||||| |||||| |||| ||||||    
T  18037294 aggaaaaatgagcaaattaatgaatattgcacaaacattataaatctttatcaaaatat 18037352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 301 - 354
Target Start/End: Complemental strand, 22917158 - 22917105
Alignment:
Q  301 gtttcgacaaatcacatatgttttaactgctcacactcatatatcaaatattta 354  Q
    ||||||| ||||||||||||||||||||||||| | ||||||||||||||||||    
T  22917158 gtttcgagaaatcacatatgttttaactgctcatattcatatatcaaatattta 22917105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 65 - 109
Target Start/End: Complemental strand, 290917 - 290873
Alignment:
Q  65 ttgttccaaaggaaaaataagcaaattaatgaatattgcacaaac 109  Q
    |||||||||||||||||| ||||||||||||||||||||||||||    
T  290917 ttgttccaaaggaaaaatgagcaaattaatgaatattgcacaaac 290873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 30 - 117
Target Start/End: Original strand, 2366859 - 2366946
Alignment:
Q  30 ttcgcacgtgttgaataacatatcttgtnnnnnnnttgttccaaaggaaaaataagcaaattaatgaatattgcacaaacattagaaa 117  Q
    |||||||| |||||||||| ||||||||       || ||| ||||||||||| |||||||||| |||||||||||||| ||||||||    
T  2366859 ttcgcacgggttgaataacgtatcttgtaaaaaaattattctaaaggaaaaatgagcaaattaaggaatattgcacaaatattagaaa 2366946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 27 - 118
Target Start/End: Original strand, 32977118 - 32977209
Alignment:
Q  27 tgcttcgcacgtgttgaataacatatcttgtnnnnnnnttgttccaaaggaaaaataagcaaattaatgaatattgcacaaacattagaaat 118  Q
    ||||||||||| |||||||||| ||||||||       ||||| ||||| |||||| || |||||||  |||||||||||||||||||||||    
T  32977118 tgcttcgcacgggttgaataacgtatcttgtaaaaaaattgtttcaaagaaaaaatgagtaaattaagaaatattgcacaaacattagaaat 32977209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 76 - 132
Target Start/End: Complemental strand, 37464555 - 37464499
Alignment:
Q  76 gaaaaataagcaaattaatgaatattgcacaaacattagaaatctatatccaaatat 132  Q
    ||||||| ||||||||||||||||||||||||| |||| |||||| |||| ||||||    
T  37464555 gaaaaatgagcaaattaatgaatattgcacaaaaattataaatctttatcaaaatat 37464499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 65 - 118
Target Start/End: Original strand, 38041546 - 38041599
Alignment:
Q  65 ttgttccaaaggaaaaataagcaaattaatgaatattgcacaaacattagaaat 118  Q
    ||||| ||||| |||||| |||||||||| |||||||||||||| |||||||||    
T  38041546 ttgtttcaaagaaaaaatgagcaaattaaggaatattgcacaaatattagaaat 38041599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 65 - 118
Target Start/End: Original strand, 39169401 - 39169454
Alignment:
Q  65 ttgttccaaaggaaaaataagcaaattaatgaatattgcacaaacattagaaat 118  Q
    ||||||| |||||||||| || |||||| |||||||||||||||||||| ||||    
T  39169401 ttgttccgaaggaaaaatgagaaaattactgaatattgcacaaacattataaat 39169454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 184 - 220
Target Start/End: Complemental strand, 10000869 - 10000833
Alignment:
Q  184 gtcaaattcttgttatttctttaggactaaaatcaat 220  Q
    ||||||||||||||||| |||||||||||||||||||    
T  10000869 gtcaaattcttgttattcctttaggactaaaatcaat 10000833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 118
Target Start/End: Complemental strand, 19365980 - 19365879
Alignment:
Q  17 tacagacccatgcttcgcacgtgttgaataacatatcttgtnnnnnnnttgttccaaaggaaaaataagcaaattaatgaatattgcacaaacattagaa 116  Q
    |||| |||| ||||||||| | |||||||||| ||||||||        ||||  |||| |||||| |||||||||| ||||||||||||||||||| ||    
T  19365980 tacaaacccgtgcttcgcatgggttgaataacgtatcttgtaaaaaaaatgttttaaagaaaaaatgagcaaattaaggaatattgcacaaacattataa 19365881  T
Q  117 at 118  Q
    ||    
T  19365880 at 19365879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0088 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 17 - 109
Target Start/End: Original strand, 52699 - 52791
Alignment:
Q  17 tacagacccatgcttcgcacgtgttgaataacatatcttgtnnnnnnnttgttccaaaggaaaaataagcaaattaatgaatattgcacaaac 109  Q
    |||| |||| ||||||||||| |||||||||||||||||||       |||||||||||||||||| ||||||||||||||||||||||||||    
T  52699 tacaaacccgtgcttcgcacgggttgaataacatatcttgtaaaaaatttgttccaaaggaaaaatgagcaaattaatgaatattgcacaaac 52791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 5e-23; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 17 - 109
Target Start/End: Original strand, 12249918 - 12250010
Alignment:
Q  17 tacagacccatgcttcgcacgtgttgaataacatatcttgtnnnnnnnttgttccaaaggaaaaataagcaaattaatgaatattgcacaaac 109  Q
    |||| |||| ||||||||||| |||||||||||||||||||       |||||||||||||||||| ||||||||||||||||||||||||||    
T  12249918 tacaaacccgtgcttcgcacgggttgaataacatatcttgtaaaaaatttgttccaaaggaaaaatgagcaaattaatgaatattgcacaaac 12250010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 17 - 109
Target Start/End: Original strand, 23626062 - 23626154
Alignment:
Q  17 tacagacccatgcttcgcacgtgttgaataacatatcttgtnnnnnnnttgttccaaaggaaaaataagcaaattaatgaatattgcacaaac 109  Q
    |||| |||| ||||||||||| |||||||||||||||||||       |||||||||||||||||| ||||||||||||||||||||||||||    
T  23626062 tacaaacccgtgcttcgcacgggttgaataacatatcttgtaaaaaatttgttccaaaggaaaaatgagcaaattaatgaatattgcacaaac 23626154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 17 - 109
Target Start/End: Complemental strand, 39445289 - 39445197
Alignment:
Q  17 tacagacccatgcttcgcacgtgttgaataacatatcttgtnnnnnnnttgttccaaaggaaaaataagcaaattaatgaatattgcacaaac 109  Q
    |||| |||| ||||||||||| |||||||||||||||||||       |||||||||||||||||| ||||||||||||||||||||||||||    
T  39445289 tacaaacccgtgcttcgcacgggttgaataacatatcttgtaaaaaatttgttccaaaggaaaaatgagcaaattaatgaatattgcacaaac 39445197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 17 - 118
Target Start/End: Complemental strand, 27272721 - 27272620
Alignment:
Q  17 tacagacccatgcttcgcacgtgttgaataacatatcttgtnnnnnnnttgttccaaaggaaaaataagcaaattaatgaatattgcacaaacattagaa 116  Q
    |||| |||| ||||||||||| |||||||||| ||||||||       |||||| ||| ||||||| |||||||||| ||||||||||||||||||||||    
T  27272721 tacaaacccgtgcttcgcacgggttgaataacgtatcttgtaataaatttgttctaaacgaaaaatgagcaaattaaagaatattgcacaaacattagaa 27272622  T
Q  117 at 118  Q
    ||    
T  27272621 at 27272620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 78 - 132
Target Start/End: Original strand, 12661025 - 12661079
Alignment:
Q  78 aaaataagcaaattaatgaatattgcacaaacattagaaatctatatccaaatat 132  Q
    ||||||||||||||||||||||||||||||||||||||||| | |||||||||||    
T  12661025 aaaataagcaaattaatgaatattgcacaaacattagaaatatttatccaaatat 12661079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 66 - 110
Target Start/End: Original strand, 4634842 - 4634886
Alignment:
Q  66 tgttccaaaggaaaaataagcaaattaatgaatattgcacaaaca 110  Q
    ||||||||||||||||| |||||||||||||||||||||||||||    
T  4634842 tgttccaaaggaaaaatgagcaaattaatgaatattgcacaaaca 4634886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 76 - 132
Target Start/End: Original strand, 20662984 - 20663040
Alignment:
Q  76 gaaaaataagcaaattaatgaatattgcacaaacattagaaatctatatccaaatat 132  Q
    ||||||| |||||||||||||||||||||||||||||| |||||| |||| ||||||    
T  20662984 gaaaaatgagcaaattaatgaatattgcacaaacattataaatctttatcaaaatat 20663040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 76 - 132
Target Start/End: Original strand, 44213101 - 44213157
Alignment:
Q  76 gaaaaataagcaaattaatgaatattgcacaaacattagaaatctatatccaaatat 132  Q
    ||||||| |||||||||||||||||||||||||||||| |||||| |||| ||||||    
T  44213101 gaaaaatgagcaaattaatgaatattgcacaaacattataaatctttatcaaaatat 44213157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 17 - 108
Target Start/End: Complemental strand, 41908045 - 41907954
Alignment:
Q  17 tacagacccatgcttcgcacgtgttgaataacatatcttgtnnnnnnnttgttccaaaggaaaaataagcaaattaatgaatattgcacaaa 108  Q
    |||| |||| ||||||||||| ||||||||| ||||||| |       |||||| |||| |||||| |||||||||||||||||||||||||    
T  41908045 tacaaacccgtgcttcgcacgggttgaataatatatcttataaaaaatttgttctaaagaaaaaatgagcaaattaatgaatattgcacaaa 41907954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 76 - 132
Target Start/End: Original strand, 30548347 - 30548403
Alignment:
Q  76 gaaaaataagcaaattaatgaatattgcacaaacattagaaatctatatccaaatat 132  Q
    ||||||| | |||||||||||||||||||||||||||| |||||| |||| ||||||    
T  30548347 gaaaaatgatcaaattaatgaatattgcacaaacattataaatctttatcaaaatat 30548403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 5e-23; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 17 - 109
Target Start/End: Original strand, 9226027 - 9226119
Alignment:
Q  17 tacagacccatgcttcgcacgtgttgaataacatatcttgtnnnnnnnttgttccaaaggaaaaataagcaaattaatgaatattgcacaaac 109  Q
    |||| |||| ||||||||||| |||||||||||||||||||       |||||||||||||||||| ||||||||||||||||||||||||||    
T  9226027 tacaaacccgtgcttcgcacgggttgaataacatatcttgtaaaaaaattgttccaaaggaaaaatgagcaaattaatgaatattgcacaaac 9226119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 17 - 109
Target Start/End: Original strand, 38434284 - 38434376
Alignment:
Q  17 tacagacccatgcttcgcacgtgttgaataacatatcttgtnnnnnnnttgttccaaaggaaaaataagcaaattaatgaatattgcacaaac 109  Q
    |||| |||| ||||||||||| |||||||||||||||||||       |||||||||||||||||| ||||||||||||||||||||||||||    
T  38434284 tacaaacccgtgcttcgcacgggttgaataacatatcttgtaaaaaaattgttccaaaggaaaaatgagcaaattaatgaatattgcacaaac 38434376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 17 - 109
Target Start/End: Complemental strand, 42996976 - 42996884
Alignment:
Q  17 tacagacccatgcttcgcacgtgttgaataacatatcttgtnnnnnnnttgttccaaaggaaaaataagcaaattaatgaatattgcacaaac 109  Q
    |||| |||| ||||||||||  |||||||||||||||||||       |||||||||||||||||| ||||||||||||||||||||||||||    
T  42996976 tacaaacccgtgcttcgcacaggttgaataacatatcttgtaaaaaatttgttccaaaggaaaaatgagcaaattaatgaatattgcacaaac 42996884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 76 - 132
Target Start/End: Original strand, 33230018 - 33230074
Alignment:
Q  76 gaaaaataagcaaattaatgaatattgcacaaacattagaaatctatatccaaatat 132  Q
    |||||||||||||||||||||||||||||||||||||| |||||| |||| ||||||    
T  33230018 gaaaaataagcaaattaatgaatattgcacaaacattataaatctttatcaaaatat 33230074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 76 - 132
Target Start/End: Complemental strand, 20765586 - 20765530
Alignment:
Q  76 gaaaaataagcaaattaatgaatattgcacaaacattagaaatctatatccaaatat 132  Q
    ||||||| |||||||||||||||||||||||||||||| |||||| |||| ||||||    
T  20765586 gaaaaatgagcaaattaatgaatattgcacaaacattataaatctttatcaaaatat 20765530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 76 - 132
Target Start/End: Complemental strand, 29491164 - 29491108
Alignment:
Q  76 gaaaaataagcaaattaatgaatattgcacaaacattagaaatctatatccaaatat 132  Q
    ||||||| |||||||||||||||||||||||||||||| |||||| |||| ||||||    
T  29491164 gaaaaatgagcaaattaatgaatattgcacaaacattataaatctttatcaaaatat 29491108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 76 - 132
Target Start/End: Original strand, 34282160 - 34282216
Alignment:
Q  76 gaaaaataagcaaattaatgaatattgcacaaacattagaaatctatatccaaatat 132  Q
    ||||||| |||||||||||||||||||||||||||||| |||||| |||| ||||||    
T  34282160 gaaaaatgagcaaattaatgaatattgcacaaacattataaatctttatcaaaatat 34282216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 65 - 131
Target Start/End: Complemental strand, 8998491 - 8998425
Alignment:
Q  65 ttgttccaaaggaaaaataagcaaattaatgaatattgcacaaacattagaaatctatatccaaata 131  Q
    |||||||||||||||||| |||||||||| ||||| |||| ||||||||||||| | |||| |||||    
T  8998491 ttgttccaaaggaaaaatgagcaaattaaggaatagtgcaaaaacattagaaatatttatcaaaata 8998425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 65 - 118
Target Start/End: Original strand, 23476642 - 23476695
Alignment:
Q  65 ttgttccaaaggaaaaataagcaaattaatgaatattgcacaaacattagaaat 118  Q
    |||||| ||||||||||| ||||||||||  |||||||||||||||||||||||    
T  23476642 ttgttctaaaggaaaaatgagcaaattaagaaatattgcacaaacattagaaat 23476695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 65 - 118
Target Start/End: Complemental strand, 45122017 - 45121964
Alignment:
Q  65 ttgttccaaaggaaaaataagcaaattaatgaatattgcacaaacattagaaat 118  Q
    ||||||||||| |||||| |||||||||| ||||| ||||||||||||||||||    
T  45122017 ttgttccaaagaaaaaatgagcaaattaaggaatagtgcacaaacattagaaat 45121964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 76 - 132
Target Start/End: Original strand, 19033712 - 19033768
Alignment:
Q  76 gaaaaataagcaaattaatgaatattgcacaaacattagaaatctatatccaaatat 132  Q
    ||||||| |||||||||||||||||||||||||||||| |||| | |||| ||||||    
T  19033712 gaaaaatgagcaaattaatgaatattgcacaaacattataaatttttatcaaaatat 19033768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 76 - 132
Target Start/End: Complemental strand, 20720924 - 20720868
Alignment:
Q  76 gaaaaataagcaaattaatgaatattgcacaaacattagaaatctatatccaaatat 132  Q
    ||||||| |||||||||||||||||||||||||||||| |||| | |||| ||||||    
T  20720924 gaaaaatgagcaaattaatgaatattgcacaaacattataaatttttatcaaaatat 20720868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 301 - 344
Target Start/End: Complemental strand, 25730895 - 25730852
Alignment:
Q  301 gtttcgacaaatcacatatgttttaactgctcacactcatatat 344  Q
    |||||||||||||||||||| |||||||||||| ||||||||||    
T  25730895 gtttcgacaaatcacatatggtttaactgctcatactcatatat 25730852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 9 - 92
Target Start/End: Complemental strand, 1484850 - 1484767
Alignment:
Q  9 taactggctacagacccatgcttcgcacgtgttgaataacatatcttgtnnnnnnnttgttccaaaggaaaaataagcaaatta 92  Q
    ||||||| |||| |||| ||||||||||| ||| |||||||||| ||||       |||||| ||||||||||| |||||||||    
T  1484850 taactggttacaaacccgtgcttcgcacgggtttaataacatattttgtaaaataattgttctaaaggaaaaatgagcaaatta 1484767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 65 - 109
Target Start/End: Original strand, 42244635 - 42244679
Alignment:
Q  65 ttgttccaaaggaaaaataagcaaattaatgaatattgcacaaac 109  Q
    ||||||| ||| |||||| | ||||||||||||||||||||||||    
T  42244635 ttgttcctaagaaaaaatgaacaaattaatgaatattgcacaaac 42244679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 301 - 354
Target Start/End: Complemental strand, 22720946 - 22720893
Alignment:
Q  301 gtttcgacaaatcacatatgttttaactgctcacactcatatatcaaatattta 354  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  22720946 gtttcgacaaatcacatatgttttaactgctcatactcatatatcaaatattta 22720893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 27 - 132
Target Start/End: Original strand, 22975734 - 22975839
Alignment:
Q  27 tgcttcgcacgtgttgaataacatatcttgtnnnnnnnttgttccaaaggaaaaataagcaaattaatgaatattgcacaaacattagaaatctatatcc 126  Q
    ||||||||||| |||||||||| ||||||||       |||||||||||||||||| ||||||||||  || ||||||||||||||| |||| | ||||     
T  22975734 tgcttcgcacgggttgaataacgtatcttgtaaaaaaattgttccaaaggaaaaatgagcaaattaagaaaaattgcacaaacattaaaaatatttatca 22975833  T
Q  127 aaatat 132  Q
    ||||||    
T  22975834 aaatat 22975839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 27 - 132
Target Start/End: Complemental strand, 23812667 - 23812562
Alignment:
Q  27 tgcttcgcacgtgttgaataacatatcttgtnnnnnnnttgttccaaaggaaaaataagcaaattaatgaatattgcacaaacattagaaatctatatcc 126  Q
    ||||||||||| |||||||||| ||||||||       |||||||||||||||||| ||||||||||  || ||||||||||||||| |||| | ||||     
T  23812667 tgcttcgcacgggttgaataacgtatcttgtaaaaaaattgttccaaaggaaaaatgagcaaattaagaaaaattgcacaaacattaaaaatatttatca 23812568  T
Q  127 aaatat 132  Q
    ||||||    
T  23812567 aaatat 23812562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 17 - 109
Target Start/End: Complemental strand, 1932375 - 1932283
Alignment:
Q  17 tacagacccatgcttcgcacgtgttgaataacatatcttgtnnnnnnnttgttccaaaggaaaaataagcaaattaatgaatattgcacaaac 109  Q
    |||| |||| ||||||||||| |||||||| | ||||||||       ||||||||||| |||||| ||||||||||||||||||||||||||    
T  1932375 tacaaacccgtgcttcgcacgggttgaatatcgtatcttgtaaaaaatttgttccaaagaaaaaatgagcaaattaatgaatattgcacaaac 1932283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 71 - 132
Target Start/End: Complemental strand, 33979165 - 33979104
Alignment:
Q  71 caaaggaaaaataagcaaattaatgaatattgcacaaacattagaaatctatatccaaatat 132  Q
    |||| ||||||| |||||||||||||||||||||||||||||| |||||| |||| ||||||    
T  33979165 caaaagaaaaatgagcaaattaatgaatattgcacaaacattataaatctttatcaaaatat 33979104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 76 - 132
Target Start/End: Complemental strand, 250099 - 250043
Alignment:
Q  76 gaaaaataagcaaattaatgaatattgcacaaacattagaaatctatatccaaatat 132  Q
    ||||||| |||||||||||||||||||||||||||||| |||||| |||| ||||||    
T  250099 gaaaaatgagcaaattaatgaatattgcacaaacattataaatctttatcaaaatat 250043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 76 - 132
Target Start/End: Original strand, 12579843 - 12579899
Alignment:
Q  76 gaaaaataagcaaattaatgaatattgcacaaacattagaaatctatatccaaatat 132  Q
    ||||||| |||||||||||||||||||||||||||||| |||||| |||| ||||||    
T  12579843 gaaaaatgagcaaattaatgaatattgcacaaacattataaatctttatcaaaatat 12579899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 8 - 132
Target Start/End: Original strand, 2624719 - 2624843
Alignment:
Q  8 ataactggctacagacccatgcttcgcacgtgttgaataacatatcttgtnnnnnnnttgttccaaaggaaaaataagcaaattaatgaatattgcacaa 107  Q
    |||||| | |||| |||| ||| ||||||| |||||||||| ||||||||       ||||| |||||||||||| || |||||||  || |||||||||    
T  2624719 ataactagttacaaacccgtgcatcgcacgggttgaataacgtatcttgtaaaaaaattgtttcaaaggaaaaatgagaaaattaagaaaaattgcacaa 2624818  T
Q  108 acattagaaatctatatccaaatat 132  Q
    |||||| |||| | |||| ||||||    
T  2624819 acattaaaaatatttatcaaaatat 2624843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 77 - 132
Target Start/End: Original strand, 3052072 - 3052127
Alignment:
Q  77 aaaaataagcaaattaatgaatattgcacaaacattagaaatctatatccaaatat 132  Q
    |||||| ||||||||||||||||||||||||| |||| |||||| |||| ||||||    
T  3052072 aaaaatgagcaaattaatgaatattgcacaaatattataaatctttatcaaaatat 3052127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 17 - 109
Target Start/End: Complemental strand, 4425943 - 4425851
Alignment:
Q  17 tacagacccatgcttcgcacgtgttgaataacatatcttgtnnnnnnnttgttccaaaggaaaaataagcaaattaatgaatattgcacaaac 109  Q
    |||| |||| || |||||||| ||||| |||| ||||||||       || |||||||| |||||| ||||||||||||||||||||||||||    
T  4425943 tacaaacccgtgtttcgcacgggttgactaacgtatcttgtaaaaaaattattccaaagaaaaaatgagcaaattaatgaatattgcacaaac 4425851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 7 - 118
Target Start/End: Complemental strand, 33300713 - 33300602
Alignment:
Q  7 aataactggctacagacccatgcttcgcacgtgttgaataacatatcttgtnnnnnnnttgttccaaaggaaaaataagcaaattaatgaatattgcaca 106  Q
    ||||||| | |||| |||| | ||||||||| |||||||| | ||| ||||       ||||| |||||||||||| || ||||||| ||||||| ||||    
T  33300713 aataactagttacaaacccgtacttcgcacgggttgaatatcgtatattgtaaaaatattgtttcaaaggaaaaatgagtaaattaaggaatatttcaca 33300614  T
Q  107 aacattagaaat 118  Q
    ||||||||||||    
T  33300613 aacattagaaat 33300602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 8e-19; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 17 - 118
Target Start/End: Complemental strand, 1975429 - 1975328
Alignment:
Q  17 tacagacccatgcttcgcacgtgttgaataacatatcttgtnnnnnnnttgttccaaaggaaaaataagcaaattaatgaatattgcacaaacattagaa 116  Q
    |||| |||||||||||||||| ||||||| ||||||||||        ||||| |||||||||||| |||||||||| |||||||||||||| |||||||    
T  1975429 tacaaacccatgcttcgcacgggttgaattacatatcttgcaaaaaaattgtttcaaaggaaaaatgagcaaattaaggaatattgcacaaatattagaa 1975330  T
Q  117 at 118  Q
    ||    
T  1975329 at 1975328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 17 - 109
Target Start/End: Original strand, 26870035 - 26870127
Alignment:
Q  17 tacagacccatgcttcgcacgtgttgaataacatatcttgtnnnnnnnttgttccaaaggaaaaataagcaaattaatgaatattgcacaaac 109  Q
    |||| |||| ||||| ||||| |||||||||||||||||||       |||||| ||||||||||| ||||||||||||||||||||||||||    
T  26870035 tacaaacccgtgctttgcacgggttgaataacatatcttgtaaaaaatttgttcaaaaggaaaaatgagcaaattaatgaatattgcacaaac 26870127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 65 - 125
Target Start/End: Original strand, 28120239 - 28120299
Alignment:
Q  65 ttgttccaaaggaaaaataagcaaattaatgaatattgcacaaacattagaaatctatatc 125  Q
    |||||||||||||||||| || ||||||||||||||||||||||||||| |||||| ||||    
T  28120239 ttgttccaaaggaaaaatgagtaaattaatgaatattgcacaaacattataaatctttatc 28120299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 65 - 131
Target Start/End: Original strand, 49711678 - 49711744
Alignment:
Q  65 ttgttccaaaggaaaaataagcaaattaatgaatattgcacaaacattagaaatctatatccaaata 131  Q
    |||||||||||||||||| |||||||||| ||||| |||||||||||||||||| | |||| |||||    
T  49711678 ttgttccaaaggaaaaatgagcaaattaaggaatagtgcacaaacattagaaatatttatcaaaata 49711744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 76 - 132
Target Start/End: Original strand, 10259390 - 10259446
Alignment:
Q  76 gaaaaataagcaaattaatgaatattgcacaaacattagaaatctatatccaaatat 132  Q
    ||||||| |||||||||||||||||||||||||||||| |||||| |||| ||||||    
T  10259390 gaaaaatgagcaaattaatgaatattgcacaaacattataaatctttatcaaaatat 10259446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 76 - 132
Target Start/End: Original strand, 24077459 - 24077515
Alignment:
Q  76 gaaaaataagcaaattaatgaatattgcacaaacattagaaatctatatccaaatat 132  Q
    ||||||| |||||||||||||||||||||||||||||| |||||| |||| ||||||    
T  24077459 gaaaaatgagcaaattaatgaatattgcacaaacattataaatctttatcaaaatat 24077515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 76 - 132
Target Start/End: Original strand, 26924329 - 26924385
Alignment:
Q  76 gaaaaataagcaaattaatgaatattgcacaaacattagaaatctatatccaaatat 132  Q
    ||||||| |||||||||||||||||||||||||||||| |||||| |||| ||||||    
T  26924329 gaaaaatgagcaaattaatgaatattgcacaaacattataaatctttatcaaaatat 26924385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 76 - 132
Target Start/End: Complemental strand, 43332586 - 43332530
Alignment:
Q  76 gaaaaataagcaaattaatgaatattgcacaaacattagaaatctatatccaaatat 132  Q
    ||||||| |||||||||||||||||||||||||||||| |||||| |||| ||||||    
T  43332586 gaaaaatgagcaaattaatgaatattgcacaaacattataaatctttatcaaaatat 43332530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 76 - 132
Target Start/End: Complemental strand, 51452653 - 51452597
Alignment:
Q  76 gaaaaataagcaaattaatgaatattgcacaaacattagaaatctatatccaaatat 132  Q
    ||||||| |||||||||||||||||||||||||||||| |||||| |||| ||||||    
T  51452653 gaaaaatgagcaaattaatgaatattgcacaaacattataaatctttatcaaaatat 51452597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 71 - 118
Target Start/End: Complemental strand, 19591061 - 19591014
Alignment:
Q  71 caaaggaaaaataagcaaattaatgaatattgcacaaacattagaaat 118  Q
    |||||||||||| |||||||||||||||||||||||||||||| ||||    
T  19591061 caaaggaaaaatgagcaaattaatgaatattgcacaaacattataaat 19591014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 65 - 112
Target Start/End: Original strand, 23992374 - 23992421
Alignment:
Q  65 ttgttccaaaggaaaaataagcaaattaatgaatattgcacaaacatt 112  Q
    |||||||||||||||||| ||||||||| |||||||||||||||||||    
T  23992374 ttgttccaaaggaaaaatgagcaaattactgaatattgcacaaacatt 23992421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 76 - 132
Target Start/End: Complemental strand, 21565065 - 21565009
Alignment:
Q  76 gaaaaataagcaaattaatgaatattgcacaaacattagaaatctatatccaaatat 132  Q
    ||||||| ||||||||||||||||||||| |||||||| |||||| |||| ||||||    
T  21565065 gaaaaatgagcaaattaatgaatattgcataaacattataaatctttatcaaaatat 21565009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 132 - 170
Target Start/End: Original strand, 45913753 - 45913791
Alignment:
Q  132 tgaatccttcaaagtcgacagcaaaaattcttaggtcta 170  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  45913753 tgaatccttcaaagtggacagcaaaaattcttaggtcta 45913791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 27 - 118
Target Start/End: Complemental strand, 56541791 - 56541700
Alignment:
Q  27 tgcttcgcacgtgttgaataacatatcttgtnnnnnnnttgttccaaaggaaaaataagcaaattaatgaatattgcacaaacattagaaat 118  Q
    ||||||||||| |||||||||| ||||| ||       || || |||||||||||||||||||||||  ||  |||||||||||||||||||    
T  56541791 tgcttcgcacgggttgaataacgtatctcgtaaaaaaattatttcaaaggaaaaataagcaaattaagaaaagttgcacaaacattagaaat 56541700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 109
Target Start/End: Original strand, 3839101 - 3839193
Alignment:
Q  17 tacagacccatgcttcgcacgtgttgaataacatatcttgtnnnnnnnttgttccaaaggaaaaataagcaaattaatgaatattgcacaaac 109  Q
    |||| |||| ||||||||| | |||||||||| ||||||||       ||||||| ||| |||||| | ||||||||| ||||||||||||||    
T  3839101 tacaaacccgtgcttcgcaagggttgaataacgtatcttgtaaaaaaattgttcctaagaaaaaatgaacaaattaataaatattgcacaaac 3839193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 16895985 - 16895945
Alignment:
Q  17 tacagacccatgcttcgcacgtgttgaataacatatcttgt 57  Q
    |||| |||||||||||||||| |||||||||| ||||||||    
T  16895985 tacaaacccatgcttcgcacgggttgaataacgtatcttgt 16895945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 8e-19; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 27 - 132
Target Start/End: Complemental strand, 30766531 - 30766426
Alignment:
Q  27 tgcttcgcacgtgttgaataacatatcttgtnnnnnnnttgttccaaaggaaaaataagcaaattaatgaatattgcacaaacattagaaatctatatcc 126  Q
    ||||||||||| |||||||||| ||||||||       ||||||||||||||||||||| ||||||| ||||||| || ||||||||||||| | ||||     
T  30766531 tgcttcgcacgggttgaataacgtatcttgtaaaacaattgttccaaaggaaaaataagtaaattaaggaatattacataaacattagaaatatttatca 30766432  T
Q  127 aaatat 132  Q
    ||||||    
T  30766431 aaatat 30766426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 7 - 118
Target Start/End: Original strand, 22759053 - 22759163
Alignment:
Q  7 aataactggctacagacccatgcttcgcacgtgttgaataacatatcttgtnnnnnnnttgttccaaaggaaaaataagcaaattaatgaatattgcaca 106  Q
    ||||||| | |||| |||| ||||||||||| |||||| ||||||| ||||       ||||| ||||||||||||| ||||||||| ||||||||||||    
T  22759053 aataactagttacaaacccgtgcttcgcacgggttgaagaacatattttgtaaaaaaattgtttcaaaggaaaaata-gcaaattaaggaatattgcaca 22759151  T
Q  107 aacattagaaat 118  Q
    ||||||||||||    
T  22759152 aacattagaaat 22759163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 17 - 118
Target Start/End: Original strand, 44186865 - 44186966
Alignment:
Q  17 tacagacccatgcttcgcacgtgttgaataacatatcttgtnnnnnnnttgttccaaaggaaaaataagcaaattaatgaatattgcacaaacattagaa 116  Q
    |||| |||| ||||||||||| ||| |||||| || |||||       |||||||||| |||||||| ||||||||||| ||||||||||||||||||||    
T  44186865 tacaaacccgtgcttcgcacgagttcaataacgtaacttgtaaaaatattgttccaaacgaaaaataggcaaattaatggatattgcacaaacattagaa 44186964  T
Q  117 at 118  Q
    ||    
T  44186965 at 44186966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 77 - 132
Target Start/End: Original strand, 44072774 - 44072829
Alignment:
Q  77 aaaaataagcaaattaatgaatattgcacaaacattagaaatctatatccaaatat 132  Q
    |||||| |||||||||||||||||||||||||||||| |||||| |||| ||||||    
T  44072774 aaaaattagcaaattaatgaatattgcacaaacattataaatctttatcaaaatat 44072829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 65 - 108
Target Start/End: Original strand, 54792746 - 54792789
Alignment:
Q  65 ttgttccaaaggaaaaataagcaaattaatgaatattgcacaaa 108  Q
    |||||||||||||||||| |||||||||||||||||||||||||    
T  54792746 ttgttccaaaggaaaaatgagcaaattaatgaatattgcacaaa 54792789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 77 - 118
Target Start/End: Original strand, 6093210 - 6093251
Alignment:
Q  77 aaaaataagcaaattaatgaatattgcacaaacattagaaat 118  Q
    ||||||||||||||||||| ||||||||||||||||||||||    
T  6093210 aaaaataagcaaattaatggatattgcacaaacattagaaat 6093251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 84 - 132
Target Start/End: Complemental strand, 918865 - 918817
Alignment:
Q  84 agcaaattaatgaatattgcacaaacattagaaatctatatccaaatat 132  Q
    |||||||||||||||||||||||||||||| |||||| |||| ||||||    
T  918865 agcaaattaatgaatattgcacaaacattataaatctttatcaaaatat 918817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 65 - 109
Target Start/End: Original strand, 12157763 - 12157807
Alignment:
Q  65 ttgttccaaaggaaaaataagcaaattaatgaatattgcacaaac 109  Q
    |||||||||||||||||| |||||||||||||||||||| |||||    
T  12157763 ttgttccaaaggaaaaatgagcaaattaatgaatattgctcaaac 12157807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 17 - 109
Target Start/End: Complemental strand, 16496412 - 16496319
Alignment:
Q  17 tacagacccatgcttcgcacgtgttgaataacatatcttgtnnnnnnn-ttgttccaaaggaaaaataagcaaattaatgaatattgcacaaac 109  Q
    |||| |||| ||||||||||| |||||||||||||||||||        || ||||||||||||||| | ||||||||||||||||| ||||||    
T  16496412 tacaaacccgtgcttcgcacgggttgaataacatatcttgtaaaaaaaattattccaaaggaaaaatgatcaaattaatgaatattgtacaaac 16496319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 65 - 109
Target Start/End: Complemental strand, 35437242 - 35437198
Alignment:
Q  65 ttgttccaaaggaaaaataagcaaattaatgaatattgcacaaac 109  Q
    ||||||||||| |||||| ||||||||||||||||||||||||||    
T  35437242 ttgttccaaagaaaaaatgagcaaattaatgaatattgcacaaac 35437198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 17 - 109
Target Start/End: Complemental strand, 61748 - 61656
Alignment:
Q  17 tacagacccatgcttcgcacgtgttgaataacatatcttgtnnnnnnnttgttccaaaggaaaaataagcaaattaatgaatattgcacaaac 109  Q
    |||| |||| ||||||||||| |||||||| | ||||||||       |||||||||||||||||| ||||||||||||||||||||||||||    
T  61748 tacaaacccgtgcttcgcacgggttgaatatcgtatcttgtaaaaaatttgttccaaaggaaaaatgagcaaattaatgaatattgcacaaac 61656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 65 - 132
Target Start/End: Complemental strand, 24279040 - 24278973
Alignment:
Q  65 ttgttccaaaggaaaaataagcaaattaatgaatattgcacaaacattagaaatctatatccaaatat 132  Q
    ||||||| |||||||||| |||||||||||||||||||||||||||||| |||||| |||| ||||||    
T  24279040 ttgttccgaaggaaaaatgagcaaattaatgaatattgcacaaacattataaatctttatcaaaatat 24278973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 33 - 109
Target Start/End: Complemental strand, 17026136 - 17026060
Alignment:
Q  33 gcacgtgttgaataacatatcttgtnnnnnnnttgttccaaaggaaaaataagcaaattaatgaatattgcacaaac 109  Q
    ||||| |||||||||||||||||||       ||||| ||||||| |||| ||||||||||||||||||||||||||    
T  17026136 gcacgggttgaataacatatcttgtaaaaaatttgttncaaaggagaaatnagcaaattaatgaatattgcacaaac 17026060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 31 - 109
Target Start/End: Complemental strand, 17092323 - 17092245
Alignment:
Q  31 tcgcacgtgttgaataacatatcttgtnnnnnnnttgttccaaaggaaaaataagcaaattaatgaatattgcacaaac 109  Q
    ||||||| |||||||||||||||||||       ||||||||||||| |||| ||||| ||||||||||||||||||||    
T  17092323 tcgcacgggttgaataacatatcttgtaaaaaatttgttccaaaggagaaatgagcaatttaatgaatattgcacaaac 17092245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 76 - 132
Target Start/End: Complemental strand, 3711133 - 3711077
Alignment:
Q  76 gaaaaataagcaaattaatgaatattgcacaaacattagaaatctatatccaaatat 132  Q
    ||||||| |||||||||||||||||||||||||||||| |||||| |||| ||||||    
T  3711133 gaaaaatgagcaaattaatgaatattgcacaaacattataaatctttatcaaaatat 3711077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 76 - 132
Target Start/End: Original strand, 11866283 - 11866339
Alignment:
Q  76 gaaaaataagcaaattaatgaatattgcacaaacattagaaatctatatccaaatat 132  Q
    ||||||| |||||||||||||||||||||||||||||| |||||| |||| ||||||    
T  11866283 gaaaaatgagcaaattaatgaatattgcacaaacattataaatctttatcaaaatat 11866339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 17 - 108
Target Start/End: Original strand, 25124050 - 25124141
Alignment:
Q  17 tacagacccatgcttcgcacgtgttgaataacatatcttgtnnnnnnnttgttccaaaggaaaaataagcaaattaatgaatattgcacaaa 108  Q
    |||| |||| ||||||||||| ||||||| |||||||||||       ||||| |||||||||||| || ||||||| ||||||||||||||    
T  25124050 tacaaacccgtgcttcgcacgggttgaattacatatcttgtaaaaaaattgtttcaaaggaaaaatgagtaaattaaggaatattgcacaaa 25124141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 71 - 118
Target Start/End: Original strand, 1691488 - 1691535
Alignment:
Q  71 caaaggaaaaataagcaaattaatgaatattgcacaaacattagaaat 118  Q
    ||||| |||||| |||||||||| ||||||||||||||||||||||||    
T  1691488 caaagaaaaaatgagcaaattaaggaatattgcacaaacattagaaat 1691535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 71 - 118
Target Start/End: Original strand, 7984046 - 7984093
Alignment:
Q  71 caaaggaaaaataagcaaattaatgaatattgcacaaacattagaaat 118  Q
    |||||||||||| |||||||||| ||| ||||||||||||||||||||    
T  7984046 caaaggaaaaatgagcaaattaaggaacattgcacaaacattagaaat 7984093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 77 - 132
Target Start/End: Original strand, 35357677 - 35357732
Alignment:
Q  77 aaaaataagcaaattaatgaatattgcacaaacattagaaatctatatccaaatat 132  Q
    |||||| ||||||||||||||||||| |||||||||| |||||| |||| ||||||    
T  35357677 aaaaatgagcaaattaatgaatattgtacaaacattataaatctttatcaaaatat 35357732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 78 - 118
Target Start/End: Original strand, 32726057 - 32726097
Alignment:
Q  78 aaaataagcaaattaatgaatattgcacaaacattagaaat 118  Q
    |||||| ||||||||||| |||||||| |||||||||||||    
T  32726057 aaaataggcaaattaatggatattgcataaacattagaaat 32726097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 17 - 132
Target Start/End: Complemental strand, 13058 - 12943
Alignment:
Q  17 tacagacccatgcttcgcacgtgttgaataacatatcttgtnnnnnnnttgttccaaaggaaaaataagcaaattaatgaatattgcacaaacattagaa 116  Q
    |||| |||| ||||||||||| |||||||||| ||||||||       |||||||||||||||||| || |||||||  || ||||||||||||||| ||    
T  13058 tacaaacccgtgcttcgcacgggttgaataacgtatcttgtaaaaaaattgttccaaaggaaaaatgaggaaattaagaaaaattgcacaaacattaaaa 12959  T
Q  117 atctatatccaaatat 132  Q
    || | |||| ||||||    
T  12958 atatttatcaaaatat 12943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0499 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0499
Description:

Target: scaffold0499; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 65 - 118
Target Start/End: Original strand, 10700 - 10753
Alignment:
Q  65 ttgttccaaaggaaaaataagcaaattaatgaatattgcacaaacattagaaat 118  Q
    |||||||||||||||||| |||||||||| ||||| ||||||||||||||||||    
T  10700 ttgttccaaaggaaaaatgagcaaattaaggaatagtgcacaaacattagaaat 10753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0073 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0073
Description:

Target: scaffold0073; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 65 - 131
Target Start/End: Original strand, 33442 - 33508
Alignment:
Q  65 ttgttccaaaggaaaaataagcaaattaatgaatattgcacaaacattagaaatctatatccaaata 131  Q
    |||||||||||||||||| |||||||||| ||||  |||||||||||||||||| | |||| |||||    
T  33442 ttgttccaaaggaaaaatgagcaaattaaggaatcgtgcacaaacattagaaatatttatcaaaata 33508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 17 - 109
Target Start/End: Original strand, 151887 - 151980
Alignment:
Q  17 tacagacccatgcttcgcacgtgttgaataacatatcttgtnnnnnnn-ttgttccaaaggaaaaataagcaaattaatgaatattgcacaaac 109  Q
    |||| |||| ||||||||||| |||||||||||||||||||        || ||||||||||||||| | ||||||||||||||||| ||||||    
T  151887 tacaaacccgtgcttcgcacgggttgaataacatatcttgtaaaaaaaattattccaaaggaaaaatgatcaaattaatgaatattgtacaaac 151980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 65 - 118
Target Start/End: Complemental strand, 81073 - 81020
Alignment:
Q  65 ttgttccaaaggaaaaataagcaaattaatgaatattgcacaaacattagaaat 118  Q
    ||||| |||||||||||| |||||||||| ||||||||||| ||||||| ||||    
T  81073 ttgtttcaaaggaaaaatgagcaaattaaggaatattgcacgaacattataaat 81020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University