View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17241_low_1 (Length: 955)

Name: NF17241_low_1
Description: NF17241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17241_low_1
NF17241_low_1
[»] chr3 (9 HSPs)
chr3 (493-939)||(36235775-36236221)
chr3 (13-429)||(36236285-36236700)
chr3 (27-157)||(11047444-11047574)
chr3 (83-157)||(30135501-30135576)
chr3 (83-157)||(30141630-30141705)
chr3 (83-157)||(30145052-30145127)
chr3 (83-157)||(30130781-30130856)
chr3 (83-157)||(50196901-50196976)
chr3 (109-157)||(30134105-30134153)
[»] chr8 (3 HSPs)
chr8 (84-155)||(30525435-30525507)
chr8 (117-160)||(42160477-42160520)
chr8 (89-157)||(30525228-30525297)
[»] chr6 (1 HSPs)
chr6 (83-157)||(10742252-10742327)
[»] chr4 (4 HSPs)
chr4 (32-154)||(36165455-36165577)
chr4 (83-155)||(36165883-36165956)
chr4 (109-157)||(23564548-23564596)
chr4 (88-154)||(44019602-44019669)
[»] chr7 (1 HSPs)
chr7 (83-157)||(8745861-8745936)
[»] chr1 (1 HSPs)
chr1 (83-157)||(10645793-10645868)
[»] chr5 (1 HSPs)
chr5 (89-146)||(8402133-8402191)


Alignment Details
Target: chr3 (Bit Score: 439; Significance: 0; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 493 - 939
Target Start/End: Complemental strand, 36236221 - 36235775
Alignment:
Q  493 ctttttcttttggtgtatgtttgatatttaccaacacttgaatgttttaaaaagcttttgtgaattttgaggccttaagaaagcaactcaaatgatttaa 592  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36236221 ctttttcttttggtgtatgtttgatatttaccaacacttgaatgttttaaaaagcttttgtgaattttgaggccttaagaaagcaactcaaatgatttaa 36236122  T
Q  593 tatgatttcaagatggttaatgatcatggagtacatgattagatagagaagaatctctaggtttctcaagacagaaaacaagataattaaccttcaaagc 692  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36236121 tatgatttcaagatggttaatgatcatggagtacatgattagatagagaagaatctctaggtttctcaagacagaaaacaagataattaaccttcaaagc 36236022  T
Q  693 acaaataaagcaaacctatgcactaaaagtgtctttaccacatccccgtaacactacatgaaaacaacttcacatgagataagatgaaagttcaagtcct 792  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36236021 acaaataaagcaagcctatgcactaaaagtgtctttaccacatccccgtaacactacatgaaaacaacttcacatgagataagatgaaagttcaagtcct 36235922  T
Q  793 tcttaattgcaccctaagtgtggtcccattcttcttcctatccaaggaaattaatcacaaacacgaccacattagtagtagaaaattgcaatgtgctttc 892  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  36235921 tcttaattgcaccctaagtgtggtcccattcttcttcctatccaaggaaattaatcacaaacacgaccacattagtagtagaaaattgcaacgtgctttc 36235822  T
Q  893 tttcacattctggtggggttaatgacgttcagatcaagattccatat 939  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  36235821 tttcacattctggtggggttaatgacgttcagatcaagattccatat 36235775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 13 - 429
Target Start/End: Complemental strand, 36236700 - 36236285
Alignment:
Q  13 catagggtgatatctgttaaagttgtctgtagtttgtttccagtccaacattgctatggtttatgggctcgttgaatgtataaatatgtttgagcacctc 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| || ||||||||||||||||||||||||||||||    
T  36236700 catagggtgatatctgttaaagttgtctgtagtttgtttccagtccaacattgctatgatttttggact-gttgaatgtataaatatgtttgagcacctc 36236602  T
Q  113 atcatttgagctatcttttgggatgacatccaaacccatttaacaatatccatcgacgcaaatctttcgacgatctcaacaagtttttgactcttctctc 212  Q
    |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||     
T  36236601 atcatttgagttatcttttgggatgacatccaaacccatttcacaatatccatcgacgcaaatctttcgacgacctcaacaagtttttgactcttctctt 36236502  T
Q  213 ataaaacccttactataaaacaagcatcagatgaaagatacacattctattataaaacttgaatcactaacattaaccaattattgttttaagcgtttga 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36236501 ataaaacccttactataaaacaagcatcagatgaaagatacacattctattataaaacttgaatcactaacattaaccaattattgttttaagcgtttga 36236402  T
Q  313 gtgtttccaggtaattcccaactataaaagatttgtcgtcgttctccaatgcgcttccattaactctcttcgtcgttcaagatcaacctcagattaaaac 412  Q
    |||||| || |||||| ||||||||||| |||   ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  36236401 gtgtttgcaagtaatttccaactataaaggatccatcgtcgttctccaatgcgcttccattaactctcttcgtcattcaagatcaacctcagattaaaac 36236302  T
Q  413 tcataatcaaagccctt 429  Q
    |||||||||||||||||    
T  36236301 tcataatcaaagccctt 36236285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 27 - 157
Target Start/End: Original strand, 11047444 - 11047574
Alignment:
Q  27 tgttaaagttgtctgtagtttgtttccagtccaacattgctatggtttatgggctcgttgaatgtataaatatgtttgagcacc-tcatcatttgagcta 125  Q
    |||| ||||||| ||||||||||||| ||||| ||||||||  ||||| || ||| ||||| |||||||||| | ||||| ||| ||||| |||||||||    
T  11047444 tgttgaagttgtttgtagtttgtttctagtcccacattgctcaggtttgtgcgct-gttgagtgtataaatacgcttgagtaccctcatcctttgagcta 11047542  T
Q  126 tcttttgggatgacatccaaacccatttaaca 157  Q
     |||||  ||||| ||||||||||||||||||    
T  11047543 acttttatgatgagatccaaacccatttaaca 11047574  T

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Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 83 - 157
Target Start/End: Complemental strand, 30135576 - 30135501
Alignment:
Q  83 gttgaatgtataaatatgtttgagcacc-tcatcatttgagctatcttttgggatgacatccaaacccatttaaca 157  Q
    |||| ||||||||||||| ||||| ||| ||||||||||||||| |||||||||||| |||||| || ||||||||    
T  30135576 gttggatgtataaatatgcttgagtaccctcatcatttgagctaacttttgggatgagatccaagcctatttaaca 30135501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 83 - 157
Target Start/End: Complemental strand, 30141705 - 30141630
Alignment:
Q  83 gttgaatgtataaatatgtttgagcacc-tcatcatttgagctatcttttgggatgacatccaaacccatttaaca 157  Q
    |||| ||||||||||||| ||||| ||| ||||||||||||||| |||||||||||| |||||| || ||||||||    
T  30141705 gttggatgtataaatatgcttgagtaccctcatcatttgagctaacttttgggatgagatccaagcctatttaaca 30141630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 83 - 157
Target Start/End: Complemental strand, 30145127 - 30145052
Alignment:
Q  83 gttgaatgtataaatatgtttgagcacc-tcatcatttgagctatcttttgggatgacatccaaacccatttaaca 157  Q
    |||| ||||||||||||| ||||| ||| ||||||||||||||| |||||||||||| |||||| || ||||||||    
T  30145127 gttggatgtataaatatgcttgagtaccctcatcatttgagctaacttttgggatgagatccaagcctatttaaca 30145052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 83 - 157
Target Start/End: Complemental strand, 30130856 - 30130781
Alignment:
Q  83 gttgaatgtataaatatgtttgagcacct-catcatttgagctatcttttgggatgacatccaaacccatttaaca 157  Q
    ||||| |||||||||||| ||||| | || ||||||||||||||  ||||||||||| ||||||||| ||||||||    
T  30130856 gttgagtgtataaatatgcttgagtatcttcatcatttgagctagtttttgggatgagatccaaacctatttaaca 30130781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 83 - 157
Target Start/End: Original strand, 50196901 - 50196976
Alignment:
Q  83 gttgaatgtataaatatgtttgagcacc-tcatcatttgagctatcttttgggatgacatccaaacccatttaaca 157  Q
    ||||| ||||||||||||||| |  ||| ||||| ||||||||| |||||||||||| ||||||||| ||||||||    
T  50196901 gttgagtgtataaatatgtttaaataccctcatcctttgagctaacttttgggatgagatccaaacctatttaaca 50196976  T

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Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 109 - 157
Target Start/End: Complemental strand, 30134153 - 30134105
Alignment:
Q  109 cctcatcatttgagctatcttttgggatgacatccaaacccatttaaca 157  Q
    ||||||||||||||||| |||||||||||| |||||| || ||||||||    
T  30134153 cctcatcatttgagctaacttttgggatgagatccaagcctatttaaca 30134105  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 84 - 155
Target Start/End: Original strand, 30525435 - 30525507
Alignment:
Q  84 ttgaatgtataaatatgtttgagcacct-catcatttgagctatcttttgggatgacatccaaacccatttaa 155  Q
    |||| |||||||||||||||||| |||| |||| ||||||||| ||||| |||||| ||||||||||||||||    
T  30525435 ttgagtgtataaatatgtttgagtaccttcatcttttgagctacctttttggatgagatccaaacccatttaa 30525507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 160
Target Start/End: Original strand, 42160477 - 42160520
Alignment:
Q  117 tttgagctatcttttgggatgacatccaaacccatttaacaata 160  Q
    ||||||||| |||||||||||| |||||||| ||||||||||||    
T  42160477 tttgagctaacttttgggatgagatccaaactcatttaacaata 42160520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 157
Target Start/End: Original strand, 30525228 - 30525297
Alignment:
Q  89 tgtataaatatgtttgagcac-ctcatcatttgagctatcttttgggatgacatccaaacccatttaaca 157  Q
    |||||||||||||||||| || |||||  ||||||||| |||||||||||| || ||| | |||||||||    
T  30525228 tgtataaatatgtttgagtactctcattctttgagctagcttttgggatgagatacaagcacatttaaca 30525297  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 83 - 157
Target Start/End: Original strand, 10742252 - 10742327
Alignment:
Q  83 gttgaatgtataaatatgtttgagcacc-tcatcatttgagctatcttttgggatgacatccaaacccatttaaca 157  Q
    |||||||||||||||||||||| | ||| | |||||||||  || |||||||||||| |||||||| |||||||||    
T  10742252 gttgaatgtataaatatgtttgggtaccctaatcatttgatttagcttttgggatgagatccaaacacatttaaca 10742327  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000009; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 32 - 154
Target Start/End: Complemental strand, 36165577 - 36165455
Alignment:
Q  32 aagttgtctgtagtttgtttccagtccaacattgctatggtttatgggctcgttgaatgtataaatatgtttgagcacc-tcatcatttgagctatcttt 130  Q
    ||||||| |||| |||||||| ||||| ||||||||| ||||   ||| | ||||| |||||||| ||||||||| ||| ||||| |||| ||||  |||    
T  36165577 aagttgtttgtaatttgtttctagtcccacattgctaaggttcccgggtt-gttgagtgtataaagatgtttgagtaccctcatcttttgtgctagattt 36165479  T
Q  131 tgggatgacatccaaacccattta 154  Q
    |||||||| |||||| ||||||||    
T  36165478 tgggatgagatccaagcccattta 36165455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 155
Target Start/End: Complemental strand, 36165956 - 36165883
Alignment:
Q  83 gttgaatgtataaatatgtttgagca-cctcatcatttgagctatcttttgggatgacatccaaacccatttaa 155  Q
    ||||| |||||||| ||||||||||| ||||||| ||| ||||| |||||| ||||| |||||||| |||||||    
T  36165956 gttgagtgtataaacatgtttgagcaccctcatcctttaagctaacttttgcgatgagatccaaactcatttaa 36165883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 109 - 157
Target Start/End: Complemental strand, 23564596 - 23564548
Alignment:
Q  109 cctcatcatttgagctatcttttgggatgacatccaaacccatttaaca 157  Q
    ||||||| ||||||||| |||||||||||| ||||||||| ||||||||    
T  23564596 cctcatcctttgagctaacttttgggatgagatccaaacctatttaaca 23564548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 154
Target Start/End: Complemental strand, 44019669 - 44019602
Alignment:
Q  88 atgtataaatatgtttgagcacc-tcatcatttgagctatcttttgggatgacatccaaacccattta 154  Q
    |||||||||| |||||| ||||| ||||| ||||||||| |||||||||||| ||| || ||||||||    
T  44019669 atgtataaatgtgtttgggcaccctcatcctttgagctaacttttgggatgagatctaagcccattta 44019602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 157
Target Start/End: Complemental strand, 8745936 - 8745861
Alignment:
Q  83 gttgaatgtataaatatgtttgagca-cctcatcatttgagctatcttttgggatgacatccaaacccatttaaca 157  Q
    ||||| |||||||||||||| ||| | ||||||| ||| ||||| |||||||||||| |||||| | |||||||||    
T  8745936 gttgagtgtataaatatgttcgagtatcctcatcctttaagctaacttttgggatgagatccaagctcatttaaca 8745861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 157
Target Start/End: Original strand, 10645793 - 10645868
Alignment:
Q  83 gttgaatgtataaatatgtttgagcacc-tcatcatttgagctatcttttgggatgacatccaaacccatttaaca 157  Q
    ||||| |||||||||||||||||| ||| ||||| || ||||||||||||  ||||| ||| ||||| ||||||||    
T  10645793 gttgagtgtataaatatgtttgagtaccctcatccttagagctatcttttaagatgagatcaaaacctatttaaca 10645868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 89 - 146
Target Start/End: Complemental strand, 8402191 - 8402133
Alignment:
Q  89 tgtataaatatgtttgagcacc-tcatcatttgagctatcttttgggatgacatccaaa 146  Q
    |||||||||||||||||| ||| || || ||||||||| |||||||||||| |||||||    
T  8402191 tgtataaatatgtttgagtaccctcctcctttgagctaacttttgggatgaaatccaaa 8402133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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