View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17241_low_17 (Length: 449)
Name: NF17241_low_17
Description: NF17241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17241_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 389; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 33 - 433
Target Start/End: Original strand, 28292418 - 28292818
Alignment:
| Q |
33 |
tttatgtttaaatagcacaactctaattattctaacggtagtataaacattttgatatttgtcaggaccagcgagatgttaccggcaaattaagaacaaa |
132 |
Q |
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| T |
28292418 |
tttatgtttaaatagcacaactctaattattctaacggtagtataaacattttgatatttgtcaggaccagcgagatgttaccggcaaattaagaacaaa |
28292517 |
T |
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| Q |
133 |
ccataccctaagtcacgattctgtcgcggtgtaccagatccaaagatccgaatctatgatgtaggtgcgaagaaaaaaggcgtagatgagttcccatttt |
232 |
Q |
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| T |
28292518 |
ccataccctaagtcacgattctgtcgcggtgtaccagatccaaagatccgaatctatgatgtaggtgcgaagaaaaaaggcgtagatgagttcccatttt |
28292617 |
T |
|
| Q |
233 |
gcgtccacttagtatcgtgggagaaagagaatgtctctagtgaagcattagaggcagctagaatcgcgtgcaacaagtacatgtcaaaatttgcgggaaa |
332 |
Q |
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| T |
28292618 |
gcgtccacttagtatcgtgggagaaagagaatgtctctagcgaagcattagaggcagctagaatcgcgtgcaacaagtacatgtcaaaatttgctggaaa |
28292717 |
T |
|
| Q |
333 |
agacacgtttcatttgcgtgtgagggttcatcctttccatgtgttgaggattaataagatgctctcgtgtgctggggcagataggttgcagacggggatg |
432 |
Q |
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| T |
28292718 |
agacacgtttcatttgcgtgtgagggttcatcctttccatgtgttgaggattaataagatgctctcgtgtgctggggcggataggttgcagacggggatg |
28292817 |
T |
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| Q |
433 |
a |
433 |
Q |
| |
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| T |
28292818 |
a |
28292818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 96 - 417
Target Start/End: Original strand, 43069818 - 43070139
Alignment:
| Q |
96 |
aggaccagcgagatgttaccggcaaattaagaacaaaccataccctaagtcacgattctgtcgcggtgtaccagatccaaagatccgaatctatgatgta |
195 |
Q |
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| T |
43069818 |
aggacctgcaaggtgttaccgtcaaattaagaacaagccatatccaaagtcccgtttctgtcgtggtgttcctgatcccaagatcaggatttacgatgtt |
43069917 |
T |
|
| Q |
196 |
ggtgcgaagaaaaaaggcgtagatgagttcccattttgcgtccacttagtatcgtgggagaaagagaatgtctctagtgaagcattagaggcagctagaa |
295 |
Q |
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| T |
43069918 |
ggcatgaagaagaaaggtgttgatgagtttcctttctgtgttcatctggtcagttgggagaaggaaaatgtgtccagtgaggcacttgaagctgctagga |
43070017 |
T |
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| Q |
296 |
tcgcgtgcaacaagtacatgtcaaaatttgcgggaaaagacacgtttcatttgcgtgtgagggttcatcctttccatgtgttgaggattaataagatgct |
395 |
Q |
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| T |
43070018 |
ttgcctgcaacaaatacatgtcaaagtttgcaggaaaggatgcattccacttgagagttagggttcatccattccatgttcttaggatcaacaagatgct |
43070117 |
T |
|
| Q |
396 |
ctcgtgtgctggggcagatagg |
417 |
Q |
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| T |
43070118 |
ttcatgtgcgggagctgatagg |
43070139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 96 - 416
Target Start/End: Complemental strand, 39035578 - 39035258
Alignment:
| Q |
96 |
aggaccagcgagatgttaccggcaaattaagaacaaaccataccctaagtcacgattctgtcgcggtgtaccagatccaaagatccgaatctatgatgta |
195 |
Q |
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|||||| || || |||||||| |||||||||||||| ||||| || || |||||||||||||| || || || ||||| |||||| | || |||||||| |
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| T |
39035578 |
aggacctgctaggtgttaccgtcaaattaagaacaagccatatccaaaatcacgattctgtcgtggagttcctgatccgaagatcaggatttatgatgtt |
39035479 |
T |
|
| Q |
196 |
ggtgcgaagaaaaaaggcgtagatgagttcccattttgcgtccacttagtatcgtgggagaaagagaatgtctctagtgaagcattagaggcagctagaa |
295 |
Q |
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| T |
39035478 |
ggcatgaagaagaagggtgttgatgagtttcctttctgtgttcatctggtcagttgggagaaggaaaatgtctcaagtgaggcacttgaagcagctagga |
39035379 |
T |
|
| Q |
296 |
tcgcgtgcaacaagtacatgtcaaaatttgcgggaaaagacacgtttcatttgcgtgtgagggttcatcctttccatgtgttgaggattaataagatgct |
395 |
Q |
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| || ||||||||||||||||| || ||||| ||||| || | || || ||| | || ||||||||||| |||||||| | ||||| || |||||||| |
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| T |
39035378 |
ttgcctgcaacaagtacatgtctaagtttgcaggaaaggatgcattccacttgagagtcagggttcatccattccatgtactcaggatcaacaagatgct |
39035279 |
T |
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| Q |
396 |
ctcgtgtgctggggcagatag |
416 |
Q |
| |
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|| |||||||| || ||||| |
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| T |
39035278 |
ttcatgtgctggtgctgatag |
39035258 |
T |
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