View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17241_low_18 (Length: 437)
Name: NF17241_low_18
Description: NF17241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17241_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 13 - 426
Target Start/End: Original strand, 39782505 - 39782918
Alignment:
| Q |
13 |
aatatcagtggcatgtgacttgtgaatagtaatgtatcagtgcacaatgtaaaatagtggtgttaatgcgtgacatatcaaaccccaccatacttgataa |
112 |
Q |
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| T |
39782505 |
aatatcagtggcatgtgacttgtgaatagtaatgtatcagtgcacaaagtaaaatagtggtgttaatgcgtgacatatcaaaccccaccatacttgataa |
39782604 |
T |
|
| Q |
113 |
caattgacacaacatttccaaactccacacaatacaaacatcattcacaaaagttagctaacagaaaatttaaatatatcacattgaccttaacatatan |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39782605 |
caattgacacaacatttccaaactccacacaatacaaacatcattcacaaaagttagctaacagaaaatttaaatatatcacattgaccttaacatatat |
39782704 |
T |
|
| Q |
213 |
nnnnnncttcccttttttaagtcatgttcagattcatcacttgaaaaaaccaaggtgattgttttaatctctcttgtcttaattgttcttcaataccaaa |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39782705 |
ttttttcttcccttttttaagtcatgttcagattcatcacttgaaaaaaccaaggtgattgttttaatctctcttgtcttaattgttcttcaataccaaa |
39782804 |
T |
|
| Q |
313 |
actactgtttctgataattccacttggttcttctcttttcattccattgctatgatgtgtcctccatcttcttgttttgtttatatcacttgatccagtt |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39782805 |
actactgtttctgataattccacttggttcttctcttttcattccattgctatgatgtgtcctccatcttcttgttttgtttatatcacttgatccagtt |
39782904 |
T |
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| Q |
413 |
gaagatgaagacaa |
426 |
Q |
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|||||||||||||| |
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| T |
39782905 |
gaagatgaagacaa |
39782918 |
T |
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