View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17241_low_19 (Length: 428)
Name: NF17241_low_19
Description: NF17241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17241_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 189; Significance: 1e-102; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 210 - 413
Target Start/End: Original strand, 131217 - 131423
Alignment:
| Q |
210 |
aagcagaagcagcagcagcaggtattgctggattgtgataattagagtgtggttgttgctgtgggtagtaggaaggaacctgattatataacgggactgc |
309 |
Q |
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| T |
131217 |
aagcagaagcagcagcagcaggtattgctggattgtgataattagagtgtggttgttgctgtgggtagtaggaaggaacctgattatataacgggactgc |
131316 |
T |
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| Q |
310 |
cggcggtgttgccatgtaaggaatatggcttgaggagcct---ggtttctgcaatatattacaatcacaaacacacttattaatcatcaattccaatcct |
406 |
Q |
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| T |
131317 |
cggcggtgttgccatgtaaggaatatggcttgaggagcctgcaggtttctgcaatatattaccatcacaaacacacttattaatcatcaattccaatcct |
131416 |
T |
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| Q |
407 |
tatatgt |
413 |
Q |
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||||||| |
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| T |
131417 |
tatatgt |
131423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 9 - 142
Target Start/End: Original strand, 131016 - 131149
Alignment:
| Q |
9 |
gagatgaaaattgaaatggttggcagagagacaagaattacttaccagcgtttggaggataacctggaggtggagggtatgaaggcggtggataggctga |
108 |
Q |
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| T |
131016 |
gagatgaaaattgaaatggttggcagagagacaagaattacttaccagcgtttggaggataacctgtaggtggagggtatgaaggcggtggataggctga |
131115 |
T |
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| Q |
109 |
agatggaggataagagtggggaggagggtatggc |
142 |
Q |
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| T |
131116 |
agatggaggataagagtggggaggagggtatggc |
131149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 13 - 138
Target Start/End: Complemental strand, 162028 - 161903
Alignment:
| Q |
13 |
tgaaaattgaaatggttggcagagagacaagaattacttaccagcgtttggaggataacctggaggtggagggtatgaaggcggtggataggctgaagat |
112 |
Q |
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| T |
162028 |
tgaaaattgaaatggttggcagagaaacaagaattacttaccagtgtttggaggataacctgcaggtggagggtatgatggtggtggataagctgaagat |
161929 |
T |
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| Q |
113 |
ggaggataagagtggggaggagggta |
138 |
Q |
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| T |
161928 |
ggcggataagagtggggaggagggta |
161903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 225 - 403
Target Start/End: Complemental strand, 161720 - 161543
Alignment:
| Q |
225 |
cagcaggtattgctggattgtgataattagagtgtggttgttgctgtgggtagtaggaaggaacctgattatataacgggactgccggcggtg---ttgc |
321 |
Q |
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| T |
161720 |
cagcaggtgttgttggatggtgataattagagtgtggttgttg---tgggtagtaggaaggaacgtgattatatgatgggactgccggcgttggcattgc |
161624 |
T |
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| Q |
322 |
catgtaaggaatatggcttgaggagcctggtttctgcaatatattacaatcacaaacacacttattaatcatcaattccaat |
403 |
Q |
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| T |
161623 |
tgtatagggagtatggcttgaggagcctggtttctgcaatatattagcatcccaaacacactcattaa-gatcaattccaat |
161543 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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