View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17241_low_2 (Length: 720)
Name: NF17241_low_2
Description: NF17241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17241_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 390; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 296 - 710
Target Start/End: Complemental strand, 26564700 - 26564280
Alignment:
| Q |
296 |
tgaactaatttcatctaagctaaactaaattcaaaagaaactaaagaacataacaatgtaaatcacgtaaatcgcagaaacatcacacacaccgttccca |
395 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26564700 |
tgaactaatttcatctaagctaaactaaattcaaaagaaactaaagaacagaacaatgtaaatcacgtaaatcgcagaaacatcacacacaccgttccca |
26564601 |
T |
|
| Q |
396 |
cgaagaagcaagggtgaaatcatcgaaatgctcgagctgcataatcaacaatgaaaatatcagcacatgtaaaatcagttataaaaagtgaaatcggaat |
495 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26564600 |
cgaagaagcaagggtgaaatcatcgaaatgctcgagctgcataatcaacaatgaaaatatcagcacatgtaaaatcagttataaaaagtgaaatcggaat |
26564501 |
T |
|
| Q |
496 |
caaaatgagaattcgattagataattgaaaaacctacgtcttcatcttcatcctcttccatatcttcaacttcggtgtgttcatcgtcatcagtagaatc |
595 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
26564500 |
caaaatgagaattcgattagataattgaaaaacctacgtcttcatcttcatcctcttccatatcttcgacttcggtgtgttcatcgtcatcagtagaatc |
26564401 |
T |
|
| Q |
596 |
aggtaggatcttcgtcttgccggtgtt------ggtggaggatgacgccatcgaatctcagatatgatcgcaacgttcactcaatgcgcatcatcgtgta |
689 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26564400 |
aggtaggatcttcgtcttgccggtgttggtgttggtggaggatgacgccatcgaatctcagatatgatcgcaacgttcactcaatgcgcatcatcgtgta |
26564301 |
T |
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| Q |
690 |
tgtatatgtatgtactctgtg |
710 |
Q |
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| T |
26564300 |
tgtatatgtatgtactctgtg |
26564280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 18 - 196
Target Start/End: Complemental strand, 26564980 - 26564801
Alignment:
| Q |
18 |
gaagaacacaacaatatgaatcggaaaaattactttagatcaaattaatttcatcaaaaataaattcaaactataagccaaatccatctaaactaaactt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26564980 |
gaagaacacaacaatatgaatcggaaaaattactttagatcaaattaatttcatcaaaaataaattcaaactataagccaaatccatctaaactaaactt |
26564881 |
T |
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| Q |
118 |
atttaat-nnnnnnnnnnnntcagaataaagtaaagaacataaaactgcgaattgagaaaattacagacatccagaacct |
196 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26564880 |
atttaatcaaaaaaaaaacatcagaataaagtaaagaacataaaactgcgaattgagaaaattacagacatccagaacct |
26564801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 54 - 124
Target Start/End: Complemental strand, 26565073 - 26565003
Alignment:
| Q |
54 |
agatcaaattaatttcatcaaaaataaattcaaactataagccaaatccatctaaactaaacttatttaat |
124 |
Q |
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|||| ||||||||||||||||||||||||||||| ||||||| || ||||||||||||||| | ||||||| |
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| T |
26565073 |
agattaaattaatttcatcaaaaataaattcaaaatataagctaattccatctaaactaaagtaatttaat |
26565003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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